Solyc01g067540.1 (Solanum lycopersicum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 Solyc01g067540.1 T005400_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Q84J59_MAIZE
M09717_2.00
Zea mays Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$BD1_01
0.847 0.960
ERF086
M06663_2.00
Arabidopsis thaliana
HHDYCKCCGCCGYHD

HDRCGGCGGMGRHDD
Dap-seq
OMalley et al.(2016)
PUCHI_col_a
0.843 0.940
ERF086
M06664_2.00
Arabidopsis thaliana
NNNNHDHCKCCGCCGYHDHHDHNNN

NNNDHDDHDRCGGCGGMGDHDNNNN
Dap-seq
OMalley et al.(2016)
PUCHI_colamp_a
0.843 0.940
LEP
M06661_2.00
Arabidopsis thaliana
NBCKCCGCCGYHDHHDYHNHH

DDNDRHDDHDRCGGCGGMGVN
Dap-seq
OMalley et al.(2016)
LEP_col_a
0.826 0.920
ERF087
M06573_2.00
Arabidopsis thaliana
HHDYCKCCGCCGYYD

HRRCGGCGGMGRHDD
Dap-seq
OMalley et al.(2016)
AT1G28160_col_a
0.759 0.780
ERF087
M06574_2.00
Arabidopsis thaliana
HDYCKCCGCCGYCR

YGRCGGCGGMGRHD
Dap-seq
OMalley et al.(2016)
AT1G28160_colamp_a
0.759 0.780
ERF096
M01630_2.00
Arabidopsis thaliana
NVGCCGNCNN

NNGNCGGCBN
PBM
Weirauch et al.(2014)
pTH7909
0.734 0.720
Q5Y836_TOBAC
M09732_2.00
Nicotiana tabacum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ERF5_02
0.725 0.700
ERF10
M06562_2.00
Arabidopsis thaliana
NNHNNHNHHDYCGCCGCCRYN

NRYGGCGGCGRHDDNDNNDNN
Dap-seq
OMalley et al.(2016)
ERF10_col_a
0.713 0.660
ERF10
M06563_2.00
Arabidopsis thaliana
HDSCGCCGCCRHHDNNNNNN

NNNNNNHDDYGGCGGCGSHD
Dap-seq
OMalley et al.(2016)
ERF10_colamp_a
0.713 0.660
ERF4
M01616_2.00
Arabidopsis thaliana
VCGCCGCC

GGCGGCGB
PBM
Weirauch et al.(2014)
pTH8156
0.709 0.680
ERF4
M06616_2.00
Arabidopsis thaliana
YCDCCGCCGCCRHHD

HDDYGGCGGCGGHGR
Dap-seq
OMalley et al.(2016)
ERF4_col_a
0.709 0.680
ERF4
M06617_2.00
Arabidopsis thaliana
NHNNHNSCGCCGYCRHHDNN

NNHDDYGRCGGCGSNDNNDN
Dap-seq
OMalley et al.(2016)
ERF4_colamp_a
0.709 0.680
ERF14
M01045_2.00
Arabidopsis thaliana
NVGCCGNCN

NGNCGGCBN
PBM
Sullivan et al.(2014)
pTH9793
0.709 0.720
PK19363.1
M01100_2.00
Cannabis sativa
NMGCCGHMNN

NNKDCGGCKN
PBM
Lambert et al.(2019)
pTH10138
0.696 0.680
PK19363.1
M01643_2.00
Cannabis sativa
CGCCGYCD

HGRCGGCG
PBM
Weirauch et al.(2014)
pTH9609
0.696 0.680
ERF9
M06670_2.00
Arabidopsis thaliana
YCDCCGCCGYCDHHDYHDYHN

NDRHDRHDDHGRCGGCGGHGR
Dap-seq
OMalley et al.(2016)
ERF9_col_a
0.695 0.680
ERF9
M06671_2.00
Arabidopsis thaliana
NNHDSCGCCGYCRHWDN

NHWDYGRCGGCGSHDNN
Dap-seq
OMalley et al.(2016)
ERF9_colamp_a
0.695 0.680
ERF4_TOBAC
M09728_2.00
Nicotiana tabacum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ERF3_02
0.695 0.660
ERF1B
M01619_2.00
Arabidopsis thaliana
NMGCCGCCRN

NYGGCGGCKN
PBM
Weirauch et al.(2014)
pTH8795
0.694 0.640
ERF1B
M06626_2.00
Arabidopsis thaliana
NHNNHDYMGCCGCCRYHDNHDNNNNNNN

NNNNNNNHDNHDRYGGCGGCKRHDNNDN
Dap-seq
OMalley et al.(2016)
ERF1_col_a
0.694 0.640
ERF1B
M06627_2.00
Arabidopsis thaliana
MGCCGCCD

HGGCGGCK
Dap-seq
OMalley et al.(2016)
ERF1_colamp_a
0.694 0.640
ERF1B
M09703_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ERF1_Q2_01
0.694 0.640
ERF1B
M09704_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ERF1_Q2
0.694 0.640
ERF105
M01632_2.00
Arabidopsis thaliana
CGCCGGCM

KGCCGGCG
PBM
Weirauch et al.(2014)
pTH7233
0.686 0.620
ERF105
M06676_2.00
Arabidopsis thaliana
NHNNNNNNNNHNNHDBCGCCGCCR

YGGCGGCGVHDNNDNNNNNNNNDN
Dap-seq
OMalley et al.(2016)
ERF105_colamp_a
0.686 0.620
ERF105
M06677_2.00
Arabidopsis thaliana
HDSCGCCGCCRYHDH

DHDRYGGCGGCGSHD
Dap-seq
OMalley et al.(2016)
ERF105_col
0.686 0.620
ERF11
M01606_2.00
Arabidopsis thaliana
NHGCCGNHNN

NNDNCGGCDN
PBM
Weirauch et al.(2014)
pTH8117
0.683 0.620
ERF11
M06575_2.00
Arabidopsis thaliana
NHNNHDSCGCCGYCRHHNNN

NNNDDYGRCGGCGSHDNNDN
Dap-seq
OMalley et al.(2016)
ERF11_colamp_a
0.683 0.620
ERF11
M06576_2.00
Arabidopsis thaliana
NHNYCKCCGCCGYHD

HDRCGGCGGMGRNDN
Dap-seq
OMalley et al.(2016)
ERF11_col_b
0.683 0.620
ERF113
M01629_2.00
Arabidopsis thaliana
NNGCCGHHNN

NNDDCGGCNN
PBM
Weirauch et al.(2014)
pTH8097
0.683 0.680
CRF3
M01633_2.00
Arabidopsis thaliana
NNGCCRNNN

NNNYGGCNN
PBM
Weirauch et al.(2014)
pTH8110
0.683 0.580
ERF8
M01608_2.00
Arabidopsis thaliana
MGCCGNMNNN

NNNKNCGGCK
PBM
Weirauch et al.(2014)
pTH8095
0.682 0.680
ERF8
M06586_2.00
Arabidopsis thaliana
NYHDYCKCCGCCGYH

DRCGGCGGMGRHDRN
Dap-seq
OMalley et al.(2016)
ERF8_col_a
0.682 0.680
ERF8
M06587_2.00
Arabidopsis thaliana
HNNHDSCGCCGYCRHHDN

NHDDYGRCGGCGSHDNND
Dap-seq
OMalley et al.(2016)
ERF8_colamp_a
0.682 0.680
O65242_TOBAC
M09730_2.00
Nicotiana tabacum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$TSI1_01
0.681 0.620
LOC_Os08g36920
M01634_2.00
Oryza sativa
NNNGSCGHNN

NNDCGSCNNN
PBM
Weirauch et al.(2014)
pTH8596
0.677 0.620
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Solyc01g067540.1.1 AP2 54 105

Links

Other AP2 family TFs
Other Solanum lycopersicum TFs

1235 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AMTR_s00007p00169630 Amborella trichopoda AMTR_s00007p00169630 I 0.000
BGIOSGA000003 Oryza indica BGIOSGA000003 N 0.000
BRADI3G06470 Brachypodium distachyon BRADI3G06470 I 0.000
chr2.LjT13M01.180.nd Lotus japonicus chr2.LjT13M01.180.nd I 0.000
gene20888-v1.0-hybrid Fragaria vesca gene20888-v1.0-hybrid I 0.000
GLYMA14G06870 Glycine max GLYMA14G06870 I 0.000
GRMZM2G369799 Zea mays GRMZM2G369799 I 0.000
LPERR01G40230 Leersia perrieri LPERR01G40230 I 0.000
Lus10028979.g Linum usitatissimum Lus10028979.g I 0.000
Lus10040940.g Linum usitatissimum Lus10040940.g I 0.000
MLOC_7426 Hordeum vulgare MLOC_7426 I 0.000
OB01G55080 Oryza brachyantha OB01G55080 N 0.000
OBART01G45880 Oryza barthii OBART01G45880 N 0.000
OGLUM01G50230 Oryza glumaepatula OGLUM01G50230 N 0.000
OGLUM02G06640 Oryza glumaepatula OGLUM02G06640 I 0.000
OLONG_011153 Oryza longistaminata OLONG_011153 N 0.000
OMERI02G07700 Oryza meridionalis OMERI02G07700 I 0.000
ONIVA01G52120 Oryza nivara ONIVA01G52120 N 0.000
ONIVA02G08210 Oryza nivara ONIVA02G08210 I 0.000
OPUNC01G44800 Oryza punctata OPUNC01G44800 N 0.000
OPUNC02G05820 Oryza punctata OPUNC02G05820 I 0.000
ORGLA01G0396300 Oryza glaberrima ORGLA01G0396300 N 0.000
ORGLA02G0061500 Oryza glaberrima ORGLA02G0061500 I 0.000
ORUFI01G49370 Oryza rufipogon ORUFI01G49370 N 0.000
ORUFI02G06760 Oryza rufipogon ORUFI02G06760 I 0.000
OS01G0977300 Oryza sativa OS01G0977300 N 0.000
OS02G0187700 Oryza sativa OS02G0187700 D 0.000
Pavir.Ca02945 Panicum virgatum Pavir.Ca02945 I 0.000
Pavir.Cb00156 Panicum virgatum Pavir.Cb00156 I 0.000
Sb0088s002210 Sorghum bicolor Sb0088s002210 N 0.000
Si022959m.g Setaria italica Si022959m.g I 0.000
Traes_4AS_A79A68739 Triticum aestivum Traes_4AS_A79A68739 N 0.000
Traes_4BL_545A5716E Triticum aestivum Traes_4BL_545A5716E I 0.000