Cla013270 (Citrullus lanatus)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Cla013270 T006472_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LOC_Os08g36920
M01634_2.00 		Oryza sativa
NNNGSCGHNN
NNDCGSCNNN		 PBM
Weirauch et al.(2014)
pTH8596 		0.738 0.784
A4F248_TOBAC
M09725_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$WRAF1_01 		0.735 0.843
A4F249_TOBAC
M09726_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$WRAF2_01 		0.728 0.824
AT2G33710
M01613_2.00 		Arabidopsis thaliana
NSMGCCGHMN
NKDCGGCKSN		 PBM
Weirauch et al.(2014)
pTH7543 		0.726 0.765
AT2G33710
M06606_2.00 		Arabidopsis thaliana
DBCGCCGCCGYHDHHDNH
DNHDDHDRCGGCGGCGVH		 Dap-seq
OMalley et al.(2016)
At2g33710_colamp_a 		0.726 0.765
AT2G33710
M06607_2.00 		Arabidopsis thaliana
NHDYCKCCGCCGYMD
HKRCGGCGGMGRHDN		 Dap-seq
OMalley et al.(2016)
At2g33710_col 		0.726 0.765
ERF113
M01629_2.00 		Arabidopsis thaliana
NNGCCGHHNN
NNDDCGGCNN		 PBM
Weirauch et al.(2014)
pTH8097 		0.714 0.725
CRF2
M01622_2.00 		Arabidopsis thaliana
SCGCCGCC
GGCGGCGS		 PBM
Weirauch et al.(2014)
pTH8680 		0.684 0.667
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cla013270 AP2 143 194

Links

Other AP2 family TFs
Other Citrullus lanatus TFs

270 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cucsa.244290 Cucumis sativus Cucsa.244290 I 0.829
Ciclev10028930m.g Citrus clementina Ciclev10028930m.g I 0.775
cassava38228.valid.m1 Manihot esculenta cassava38228.valid.m1 I 0.771
TCM_007061 Theobroma cacao TCM_007061 I 0.771
Gorai.008G025100 Gossypium raimondii Gorai.008G025100 I 0.771
evm.TU.supercontig_62.11 Carica papaya evm.TU.supercontig_62.11 I 0.765
Gorai.005G238000 Gossypium raimondii Gorai.005G238000 I 0.761
POPTR_0009s10470 Populus trichocarpa POPTR_0009s10470 I 0.761
SapurV1A.0643s0230 Salix purpurea SapurV1A.0643s0230 I 0.761
SapurV1A.2778s0010 Salix purpurea SapurV1A.2778s0010 I 0.761
Gorai.013G043700 Gossypium raimondii Gorai.013G043700 I 0.761
PRUPE_ppa023235mg Prunus persica PRUPE_ppa023235mg I 0.759
Pm021321 Prunus mume Pm021321 I 0.759
MTR_4g086220 Medicago truncatula MTR_4g086220 I 0.749
PGSC0003DMG400025797 Solanum tuberosum PGSC0003DMG400025797 I 0.749
Solyc01g108240.2 Solanum lycopersicum Solyc01g108240.2 I 0.749
POPTR_0270s00200 Populus trichocarpa POPTR_0270s00200 I 0.745
29801.m003186 Ricinus communis 29801.m003186 I 0.745
POPTR_0004s14840 Populus trichocarpa POPTR_0004s14840 I 0.745
MDP0000317932 Malus domestica MDP0000317932 I 0.744
OPUNC09G11150 Oryza punctata OPUNC09G11150 I 0.742
GSMUA_Achr7G18930_001 Musa acuminata GSMUA_Achr7G18930_001 I 0.742
OB09G19290 Oryza brachyantha OB09G19290 I 0.742
MLOC_67996 Hordeum vulgare MLOC_67996 I 0.742
OMERI09G10200 Oryza meridionalis OMERI09G10200 I 0.742
Bo4g182140 Brassica oleracea Bo4g182140 I 0.741
Bra021871 Brassica rapa Bra021871 I 0.741
Eucgr.I01153 Eucalyptus grandis Eucgr.I01153 I 0.741
BRADI3G38140 Brachypodium distachyon BRADI3G38140 I 0.741
Sb07g023030 Sorghum bicolor Sb07g023030 I 0.739
GRMZM2G369472 Zea mays GRMZM2G369472 I 0.739
cassava8409.m1 Manihot esculenta cassava8409.m1 I 0.739
ONIVA08G19930 Oryza nivara ONIVA08G19930 I 0.738
OS08G0474000 Oryza sativa OS08G0474000 I 0.738
OGLUM08G18720 Oryza glumaepatula OGLUM08G18720 I 0.738
LOC_Os08g36920 Oryza sativa LOC_Os08g36920 D 0.738
OPUNC08G15760 Oryza punctata OPUNC08G15760 I 0.738
OLONG_013554 Oryza longistaminata OLONG_013554 I 0.738
Si030856m.g Setaria italica Si030856m.g I 0.737
Si014237m.g Setaria italica Si014237m.g I 0.737
PK15705.1 Cannabis sativa PK15705.1 I 0.737
Pm026408 Prunus mume Pm026408 I 0.736
MTR_4g086160 Medicago truncatula MTR_4g086160 I 0.735
MTR_4g086190 Medicago truncatula MTR_4g086190 I 0.735
A4F248_TOBAC Nicotiana tabacum A4F248_TOBAC D 0.735
GSMUA_Achr3G06960_001 Musa acuminata GSMUA_Achr3G06960_001 I 0.734
gw1.259.19.1 Physcomitrella patens gw1.259.19.1 I 0.734
OB08G25030 Oryza brachyantha OB08G25030 I 0.734
Pavir.Fa00656 Panicum virgatum Pavir.Fa00656 I 0.734
MTR_4g086165 Medicago truncatula MTR_4g086165 I 0.733
LjT03L06.60.nd Lotus japonicus LjT03L06.60.nd I 0.733
LPERR09G09240 Leersia perrieri LPERR09G09240 I 0.732
gene24044-v1.0-hybrid Fragaria vesca gene24044-v1.0-hybrid I 0.732
MDP0000254227 Malus domestica MDP0000254227 I 0.731
Lus10014054.g Linum usitatissimum Lus10014054.g I 0.731
A4F249_TOBAC Nicotiana tabacum A4F249_TOBAC D 0.728
GRMZM2G138396 Zea mays GRMZM2G138396 I 0.727
Bo4g043530 Brassica oleracea Bo4g043530 I 0.727
Bra005480 Brassica rapa Bra005480 I 0.727
fgenesh2_kg.4__1380__AT2G33710.1 Arabidopsis lyrata fgenesh2_kg.4__1380__AT2G33710.1 I 0.726
MDP0000175375 Malus domestica MDP0000175375 I 0.726
AT2G33710 Arabidopsis thaliana AT2G33710 D 0.726
Bostr.23794s0729 Boechera stricta Bostr.23794s0729 I 0.726
Thhalv10017235m.g Eutrema salsugineum Thhalv10017235m.g I 0.726
GSMUA_Achr8G08000_001 Musa acuminata GSMUA_Achr8G08000_001 I 0.722
Sb02g026630 Sorghum bicolor Sb02g026630 I 0.722
PRUPE_ppa017002mg Prunus persica PRUPE_ppa017002mg I 0.721
Bo9g167820 Brassica oleracea Bo9g167820 I 0.721
Cagra.0301s0013 Capsella grandiflora Cagra.0301s0013 I 0.720
Carubv10025511m.g Capsella rubella Carubv10025511m.g I 0.720
e_gw1.31.217.1 Physcomitrella patens e_gw1.31.217.1 I 0.718
Bo2g011200 Brassica oleracea Bo2g011200 I 0.716
Bra023404 Brassica rapa Bra023404 I 0.716
ERF113 Arabidopsis thaliana AT5G13330 D 0.714
Thhalv10014575m.g Eutrema salsugineum Thhalv10014575m.g I 0.714
chr4.CM0227.40.nd Lotus japonicus chr4.CM0227.40.nd I 0.714
Bostr.2902s0068 Boechera stricta Bostr.2902s0068 I 0.714
Bra008835 Brassica rapa Bra008835 I 0.714
Carubv10001831m.g Capsella rubella Carubv10001831m.g I 0.714
Rap2.6L Arabidopsis lyrata fgenesh2_kg.6__1285__AT5G13330.1 I 0.714
GLYMA07G33511 Glycine max GLYMA07G33511 I 0.713
Traes_5BL_F5D379AFC Triticum aestivum Traes_5BL_F5D379AFC I 0.709
Solyc10g050970.1 Solanum lycopersicum Solyc10g050970.1 I 0.709
Pavir.J19559 Panicum virgatum Pavir.J19559 I 0.708
gene18922-v1.0-hybrid Fragaria vesca gene18922-v1.0-hybrid I 0.708
Ca_06446 Cicer arietinum Ca_06446 I 0.707
gw1.136.88.1 Physcomitrella patens gw1.136.88.1 I 0.707
OB08G28690 Oryza brachyantha OB08G28690 I 0.707
ORUFI09G13770 Oryza rufipogon ORUFI09G13770 I 0.706
BGIOSGA030907 Oryza indica BGIOSGA030907 I 0.706
ORGLA09G0098000 Oryza glaberrima ORGLA09G0098000 I 0.706
OBART09G12810 Oryza barthii OBART09G12810 I 0.706
OS09G0457900 Oryza sativa OS09G0457900 I 0.706
OGLUM09G13230 Oryza glumaepatula OGLUM09G13230 I 0.706
ONIVA03G20710 Oryza nivara ONIVA03G20710 I 0.706
MTR_8g099215 Medicago truncatula MTR_8g099215 I 0.705
GLYMA16G08683 Glycine max GLYMA16G08683 I 0.705
LPERR08G14810 Leersia perrieri LPERR08G14810 I 0.704
28049.m000300 Ricinus communis 28049.m000300 I 0.703
evm.TU.supercontig_2.277 Carica papaya evm.TU.supercontig_2.277 I 0.702
MDP0000890854 Malus domestica MDP0000890854 I 0.700
GLYMA03G23330 Glycine max GLYMA03G23330 I 0.699
Eucgr.H01659 Eucalyptus grandis Eucgr.H01659 I 0.699
SapurV1A.0215s0310 Salix purpurea SapurV1A.0215s0310 I 0.698
Lus10033938.g Linum usitatissimum Lus10033938.g I 0.698
Lus10032353.g Linum usitatissimum Lus10032353.g I 0.698
SapurV1A.4828s0010 Salix purpurea SapurV1A.4828s0010 I 0.698
Solyc02g090790.1 Solanum lycopersicum Solyc02g090790.1 I 0.696
Gorai.003G082200 Gossypium raimondii Gorai.003G082200 I 0.695
Solyc04g012050.2 Solanum lycopersicum Solyc04g012050.2 I 0.694
Thhalv10026857m.g Eutrema salsugineum Thhalv10026857m.g I 0.694
PGSC0003DMG400023593 Solanum tuberosum PGSC0003DMG400023593 I 0.694
AMTR_s00010p00098700 Amborella trichopoda AMTR_s00010p00098700 I 0.693
Bra019270 Brassica rapa Bra019270 I 0.693
Bra013730 Brassica rapa Bra013730 I 0.693
Bo1g037170 Brassica oleracea Bo1g037170 I 0.693
OPUNC08G19980 Oryza punctata OPUNC08G19980 I 0.693
AMTR_s00016p00092590 Amborella trichopoda AMTR_s00016p00092590 I 0.693
gw1.67.101.1 Physcomitrella patens gw1.67.101.1 I 0.693
Cucsa.118840 Cucumis sativus Cucsa.118840 I 0.693
Bo7g109100 Brassica oleracea Bo7g109100 I 0.693
SapurV1A.0340s0060 Salix purpurea SapurV1A.0340s0060 I 0.692
PGSC0003DMG400004024 Solanum tuberosum PGSC0003DMG400004024 I 0.692
mgf008137m Mimulus guttatus mgf008137m I 0.692
cassava16956.m1 Manihot esculenta cassava16956.m1 I 0.691
cassava16948.m1 Manihot esculenta cassava16948.m1 I 0.691
30128.m008556 Ricinus communis 30128.m008556 I 0.691
cassava14904.m1 Manihot esculenta cassava14904.m1 I 0.691
Gorai.012G125700 Gossypium raimondii Gorai.012G125700 I 0.691
PK12040.1 Cannabis sativa PK12040.1 I 0.691
chr1.LjT14I13.10.nd Lotus japonicus chr1.LjT14I13.10.nd I 0.691
GLYMA05G32040 Glycine max GLYMA05G32040 I 0.690
SapurV1A.0499s0150 Salix purpurea SapurV1A.0499s0150 I 0.690
XM_002304604.1 Populus trichocarpa POPTR_0003s16090 I 0.690
POPTR_0001s12990 Populus trichocarpa POPTR_0001s12990 I 0.690
MTR_7g020980 Medicago truncatula MTR_7g020980 I 0.690
orange1.1g043184m.g Citrus sinensis orange1.1g043184m.g I 0.689
Lus10008214.g Linum usitatissimum Lus10008214.g I 0.689
Lus10003601.g Linum usitatissimum Lus10003601.g I 0.689
Sb08g004260 Sorghum bicolor Sb08g004260 I 0.689
Ciclev10005787m.g Citrus clementina Ciclev10005787m.g I 0.689
Gorai.010G236100 Gossypium raimondii Gorai.010G236100 I 0.688
Cucsa.219890 Cucumis sativus Cucsa.219890 I 0.688
POPTR_0019s15190 Populus trichocarpa POPTR_0019s15190 I 0.688
Cla016262 Citrullus lanatus Cla016262 I 0.688
Thhalv10023946m.g Eutrema salsugineum Thhalv10023946m.g I 0.688
Solyc02g090770.1 Solanum lycopersicum Solyc02g090770.1 I 0.688
CRF2 Arabidopsis thaliana AT4G23750 D 0.687
GLYMA08G28835 Glycine max GLYMA08G28835 I 0.687
Ciclev10026032m.g Citrus clementina Ciclev10026032m.g I 0.687
CRF2 Arabidopsis lyrata fgenesh2_kg.7__1924__AT4G23750.1 I 0.687
Gorai.003G048800 Gossypium raimondii Gorai.003G048800 I 0.687
Carubv10005160m.g Capsella rubella Carubv10005160m.g I 0.687
Cagra.1226s0039 Capsella grandiflora Cagra.1226s0039 I 0.687
Aquca_013_00161 Aquilegia coerulea Aquca_013_00161 I 0.687
Bostr.7867s0178 Boechera stricta Bostr.7867s0178 I 0.687
orange1.1g039390m.g Citrus sinensis orange1.1g039390m.g I 0.687
GLYMA18G51680 Glycine max GLYMA18G51680 I 0.687
PGSC0003DMG400004025 Solanum tuberosum PGSC0003DMG400004025 I 0.687
ORUFI12G04720 Oryza rufipogon ORUFI12G04720 I 0.686
ONIVA12G03810 Oryza nivara ONIVA12G03810 I 0.686
MTR_8g092460 Medicago truncatula MTR_8g092460 I 0.686
BGIOSGA036561 Oryza indica BGIOSGA036561 I 0.686
Sb07g025843 Sorghum bicolor Sb07g025843 I 0.686
Si013986m.g Setaria italica Si013986m.g I 0.686
OBART12G04120 Oryza barthii OBART12G04120 I 0.686
OGLUM12G04880 Oryza glumaepatula OGLUM12G04880 I 0.686
OPUNC12G04190 Oryza punctata OPUNC12G04190 I 0.686
MLOC_10878 Hordeum vulgare MLOC_10878 I 0.686
Cucsa.107190 Cucumis sativus Cucsa.107190 I 0.685
Cla011108 Citrullus lanatus Cla011108 I 0.685
Eucgr.B00720 Eucalyptus grandis Eucgr.B00720 I 0.685
Pavir.J28880 Panicum virgatum Pavir.J28880 I 0.685
Aquca_003_00658 Aquilegia coerulea Aquca_003_00658 I 0.684
gene28067-v1.0-hybrid Fragaria vesca gene28067-v1.0-hybrid I 0.684
MTR_1g087920 Medicago truncatula MTR_1g087920 I 0.684
Gorai.005G197100 Gossypium raimondii Gorai.005G197100 I 0.684
Lus10016827.g Linum usitatissimum Lus10016827.g I 0.684
orange1.1g019887m.g Citrus sinensis orange1.1g019887m.g I 0.684
GLYMA19G40070 Glycine max GLYMA19G40070 I 0.684
Ciclev10021059m.g Citrus clementina Ciclev10021059m.g I 0.684
MDP0000413387 Malus domestica MDP0000413387 I 0.684
TCM_008334 Theobroma cacao TCM_008334 I 0.684
POPTR_0014s09020 Populus trichocarpa POPTR_0014s09020 I 0.683
SapurV1A.0013s0740 Salix purpurea SapurV1A.0013s0740 I 0.683
PGSC0003DMG400025582 Solanum tuberosum PGSC0003DMG400025582 I 0.683
POPTR_0002s16900 Populus trichocarpa POPTR_0002s16900 I 0.683
GLYMA03G41640 Glycine max GLYMA03G41640 I 0.683
Gorai.007G105600 Gossypium raimondii Gorai.007G105600 I 0.683
Solyc06g068830.1 Solanum lycopersicum Solyc06g068830.1 I 0.683
Eucgr.E00834 Eucalyptus grandis Eucgr.E00834 I 0.683
LjSGA_008718.1 Lotus japonicus LjSGA_008718.1 I 0.683
chr2.CM0060.150.nc Lotus japonicus chr2.CM0060.150.nc I 0.683
mgf022451m Mimulus guttatus mgf022451m I 0.683
Lus10039324.g Linum usitatissimum Lus10039324.g I 0.682
Eucgr.B03559 Eucalyptus grandis Eucgr.B03559 I 0.682
Cla022096 Citrullus lanatus Cla022096 I 0.682
Cucsa.252810 Cucumis sativus Cucsa.252810 I 0.682
Lus10017550.g Linum usitatissimum Lus10017550.g I 0.682
Lus10027573.g Linum usitatissimum Lus10027573.g I 0.682
Pm018418 Prunus mume Pm018418 I 0.682
Bo3g009120 Brassica oleracea Bo3g009120 I 0.681
AMTR_s00003p00135920 Amborella trichopoda AMTR_s00003p00135920 I 0.681
Bra006195 Brassica rapa Bra006195 I 0.681
AMTR_s00010p00099690 Amborella trichopoda AMTR_s00010p00099690 I 0.680
evm.TU.supercontig_38.79 Carica papaya evm.TU.supercontig_38.79 I 0.680
VIT_01s0150g00120 Vitis vinifera VIT_01s0150g00120 I 0.680
AMTR_s00129p00119770 Amborella trichopoda AMTR_s00129p00119770 I 0.680
Rap2.6L Vitis vinifera VIT_17s0000g00200 I 0.679
Gorai.007G105700 Gossypium raimondii Gorai.007G105700 I 0.679
ORUFI08G20040 Oryza rufipogon ORUFI08G20040 I 0.679
Cla023722 Citrullus lanatus Cla023722 I 0.679
F775_21583 Aegilops tauschii F775_21583 I 0.679
GSMUA_Achr10G12150_001 Musa acuminata GSMUA_Achr10G12150_001 I 0.678
GSMUA_Achr6G08140_001 Musa acuminata GSMUA_Achr6G08140_001 I 0.678
OB04G18180 Oryza brachyantha OB04G18180 I 0.678
OS04G0398000 Oryza sativa OS04G0398000 I 0.678
GRMZM2G425798 Zea mays GRMZM2G425798 I 0.678
PDK_20s1354201g001 Phoenix dactylifera PDK_20s1354201g001 I 0.678
OGLUM04G10750 Oryza glumaepatula OGLUM04G10750 I 0.678
GRMZM2G087059 Zea mays GRMZM2G087059 I 0.678
Ca_09638 Cicer arietinum Ca_09638 I 0.678
Pavir.Gb01735 Panicum virgatum Pavir.Gb01735 I 0.678
Cucsa.122930 Cucumis sativus Cucsa.122930 I 0.678
Si010289m.g Setaria italica Si010289m.g I 0.678
Pavir.J34881 Panicum virgatum Pavir.J34881 I 0.678
ORGLA08G0225800 Oryza glaberrima ORGLA08G0225800 I 0.678
ORUFI04G12250 Oryza rufipogon ORUFI04G12250 I 0.678
F775_31480 Aegilops tauschii F775_31480 I 0.678
ORGLA04G0080400 Oryza glaberrima ORGLA04G0080400 I 0.678
ORGLA02G0353700 Oryza glaberrima ORGLA02G0353700 I 0.678
Traes_2BL_E5F50498D Triticum aestivum Traes_2BL_E5F50498D I 0.678
Traes_2DL_2536A1C8C Triticum aestivum Traes_2DL_2536A1C8C I 0.678
TCM_005203 Theobroma cacao TCM_005203 I 0.678
RRTF1 Vitis vinifera VIT_03s0063g00460 I 0.678
BGIOSGA016313 Oryza indica BGIOSGA016313 I 0.678
BGIOSGA029071 Oryza indica BGIOSGA029071 I 0.678
OPUNC04G09060 Oryza punctata OPUNC04G09060 I 0.678
Traes_2AL_6B6086A7C Triticum aestivum Traes_2AL_6B6086A7C I 0.678
OMERI08G16840 Oryza meridionalis OMERI08G16840 I 0.678
LPERR04G07810 Leersia perrieri LPERR04G07810 I 0.678
ONIVA04G08960 Oryza nivara ONIVA04G08960 I 0.678
VIT_06s0004g08190 Vitis vinifera VIT_06s0004g08190 I 0.678
BRADI5G08380 Brachypodium distachyon BRADI5G08380 I 0.678
PK12109.1 Cannabis sativa PK12109.1 I 0.677
SapurV1A.0099s0060 Salix purpurea SapurV1A.0099s0060 I 0.677
SapurV1A.0052s0250 Salix purpurea SapurV1A.0052s0250 I 0.677
MTR_7g021010 Medicago truncatula MTR_7g021010 I 0.677
HRE2 Vitis vinifera VIT_07s0005g00820 I 0.677
GLYMA10G02080 Glycine max GLYMA10G02080 I 0.677
Aquca_037_00045 Aquilegia coerulea Aquca_037_00045 I 0.677
GLYMA02G01960 Glycine max GLYMA02G01960 I 0.677
estExt_fgenesh4_pg.C_290069 Volvox carteri estExt_fgenesh4_pg.C_290069 I 0.677
Ca_03481 Cicer arietinum Ca_03481 I 0.677
29986.m001656 Ricinus communis 29986.m001656 I 0.677
cassava24734.valid.m1 Manihot esculenta cassava24734.valid.m1 I 0.677
GLYMA19G44240 Glycine max GLYMA19G44240 I 0.677
Ca_03482 Cicer arietinum Ca_03482 I 0.677
TCM_004717 Theobroma cacao TCM_004717 I 0.677
TCM_004710 Theobroma cacao TCM_004710 I 0.677
Q84XB2_SOLLC Solanum lycopersicum Q84XB2_SOLLC I 0.677
PRUPE_ppa008730mg Prunus persica PRUPE_ppa008730mg I 0.677
POPTR_0014s12090 Populus trichocarpa POPTR_0014s12090 I 0.677
MDP0000288465 Malus domestica MDP0000288465 I 0.677
Gorai.004G142800 Gossypium raimondii Gorai.004G142800 I 0.677
Gorai.004G051600 Gossypium raimondii Gorai.004G051600 I 0.677
Eucgr.H01085 Eucalyptus grandis Eucgr.H01085 I 0.677
Solyc09g075420.2 Solanum lycopersicum Solyc09g075420.2 I 0.677
gene11086-v1.0-hybrid Fragaria vesca gene11086-v1.0-hybrid I 0.677
PGSC0003DMG400031795 Solanum tuberosum PGSC0003DMG400031795 I 0.677