Pm000479 (Prunus mume)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Pm000479 T006547_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PLT1
M06622_2.00
Arabidopsis thaliana
DDCACGNWWHYCRAGRHNN

NNDYCTYGRDWWNCGTGHH
Dap-seq
OMalley et al.(2016)
PLT1_col_a
0.883 0.865
PLT1
M06623_2.00
Arabidopsis thaliana
DYDCRNWTYYCRAG

CTYGRRAWNYGHRH
Dap-seq
OMalley et al.(2016)
PLT1_colamp_a
0.883 0.865
Q6SA75_TOBAC
M09733_2.00
Nicotiana tabacum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ANTL_01
0.852 0.846
Q6SA75_TOBAC
M09734_2.00
Nicotiana tabacum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ANTL_02
0.852 0.846
ANT
M02647_2.00
Arabidopsis thaliana
DNRCACRNWTCCCVADGYNHW

WDNRCHTBGGGAWNYGTGYNH
SELEX
Mathelier et al.(2014)
MA0571.1
0.838 0.827
ANT
M09705_2.00
Arabidopsis thaliana
CACRNWTCCCRAKG

CMTYGGGAWNYGTG
Transfac
Matys et al.(2006)
P$ANT_01
0.838 0.827
AIL7
M06688_2.00
Arabidopsis thaliana
CRNWTHYCRAG

CTYGRDAWNYG
Dap-seq
OMalley et al.(2016)
AIL7_col_a
0.824 0.837
AIL7
M06689_2.00
Arabidopsis thaliana
DCRNWTHYCRAG

CTYGRDAWNYGH
Dap-seq
OMalley et al.(2016)
AIL7_colamp_a
0.824 0.837
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pm000479 AP2 169 226
Pm000479 AP2 268 320

Links

Other AP2 family TFs
Other Prunus mume TFs

526 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
nAv.1.0.1.g04717 Acanthocheilonema viteae nAv.1.0.1.g04717 N 0.000
Bm8746 Brugia malayi Bm8746 N 0.000
BTMF_0000149501 Brugia timori BTMF_0000149501 N 0.000
nDi.2.2.2.g08011 Dirofilaria immitis nDi.2.2.2.g08011 N 0.000
nLs.2.1.2.g08144 Litomosoides sigmodontis nLs.2.1.2.g08144 N 0.000
LOAG_07427 Loa loa LOAG_07427 N 0.000
OFLC_0001443101 Onchocerca flexuosa OFLC_0001443101 N 0.000
WBGene00248498 Onchocerca volvulus WBGene00248498 N 0.000