CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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gw1.2.360.1
(
Physcomitrella patens
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00847 (AP2)
IPR001471
gw1.2.360.1
T007277_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
A5JTT1_WHEAT
M09700_2.00
Triticum aestivum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ERF3_01
0.699
0.854
ERF1A
M00848_2.00
Arabidopsis thaliana
NNNNRNN
NNYNNNN
PBM
Franco-Zorrilla et al.(2014)
ATERF1
0.695
0.875
ERF1A
M00720_2.00
Arabidopsis thaliana
NMGCCRNCN
NGNYGGCKN
PBM
Chang et al.(2013)
pTH7202
0.695
0.875
ERF2_TOBAC
M09727_2.00
Nicotiana tabacum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ERF2_01
0.694
0.833
ERF115
M06657_2.00
Arabidopsis thaliana
CCGCCGYMRYHDCCR
YGGHDRYKRCGGCGG
Dap-seq
OMalley et al.(2016)
ERF115_col_a
0.693
0.771
ERF115
M06658_2.00
Arabidopsis thaliana
CKCCGCCGYMRYHDY
RHDRYKRCGGCGGMG
Dap-seq
OMalley et al.(2016)
ERF115_colamp_a
0.693
0.771
ERF113
M01629_2.00
Arabidopsis thaliana
NNGCCGHHNN
NNDDCGGCNN
PBM
Weirauch et al.(2014)
pTH8097
0.678
0.771
ERF2
M01631_2.00
Arabidopsis thaliana
NNNGCCGNCN
NGNCGGCNNN
PBM
Weirauch et al.(2014)
pTH8113
0.677
0.854
ERF2
M06672_2.00
Arabidopsis thaliana
HHNHHNYHDYCGCCGCCRYND
HNRYGGCGGCGRHDRNDDNDD
Dap-seq
OMalley et al.(2016)
ERF2_col_a
0.677
0.854
ERF2
M06673_2.00
Arabidopsis thaliana
NNNNNNNHNNHDSMGCCGCCR
YGGCGGCKSHDNNDNNNNNNN
Dap-seq
OMalley et al.(2016)
ERF2_colamp_a
0.677
0.854
For this family, TFs with SR scores >
0.677
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
gw1.2.360.1
AP2
1
52
HYRGVRQRPWGKFAAEIRDSSKNGSRIWLGTFDTAELAALAYDRAALQMRGS
Links
Other
AP2
family TFs
Other
Physcomitrella patens
TFs
218 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
gw1.38.157.1
Physcomitrella patens
gw1.38.157.1
N
0.764
gw1.2.361.1
Physcomitrella patens
gw1.2.361.1
I
0.740
ATERF2
Arabidopsis lyrata
fgenesh2_kg.8__70__AT5G47220.1
I
0.728
gw1.38.156.1
Physcomitrella patens
gw1.38.156.1
I
0.726
Bra028703
Brassica rapa
Bra028703
I
0.710
gw1.13.222.1
Physcomitrella patens
gw1.13.222.1
I
0.710
Lus10022426.g
Linum usitatissimum
Lus10022426.g
I
0.708
evm.TU.supercontig_13.175
Carica papaya
evm.TU.supercontig_13.175
I
0.707
Eucgr.G01970
Eucalyptus grandis
Eucgr.G01970
I
0.706
orange1.1g036963m.g
Citrus sinensis
orange1.1g036963m.g
I
0.706
30147.m014403
Ricinus communis
30147.m014403
I
0.706
Ciclev10032575m.g
Citrus clementina
Ciclev10032575m.g
I
0.706
mgf020878m
Mimulus guttatus
mgf020878m
I
0.704
Gorai.007G046000
Gossypium raimondii
Gorai.007G046000
I
0.704
OGLUM04G20600
Oryza glumaepatula
OGLUM04G20600
I
0.704
SELMODRAFT_68470
Selaginella moellendorffii
SELMODRAFT_68470
I
0.704
OMERI04G17100
Oryza meridionalis
OMERI04G17100
I
0.704
cassava47034.m1
Manihot esculenta
cassava47034.m1
I
0.704
ORUFI04G22230
Oryza rufipogon
ORUFI04G22230
I
0.704
SELMODRAFT_86738
Selaginella moellendorffii
SELMODRAFT_86738
I
0.704
OPUNC04G18300
Oryza punctata
OPUNC04G18300
I
0.704
PK28774.1
Cannabis sativa
PK28774.1
I
0.704
ORGLA04G0177100
Oryza glaberrima
ORGLA04G0177100
I
0.704
ONIVA04G18900
Oryza nivara
ONIVA04G18900
I
0.704
OS04G0546800
Oryza sativa
OS04G0546800
I
0.704
BGIOSGA014605
Oryza indica
BGIOSGA014605
I
0.704
GRMZM2G080516
Zea mays
GRMZM2G080516
I
0.703
GRMZM2G055180
Zea mays
GRMZM2G055180
I
0.703
MTR_6g033255
Medicago truncatula
MTR_6g033255
I
0.703
Pavir.Gb00956
Panicum virgatum
Pavir.Gb00956
I
0.703
Si030692m.g
Setaria italica
Si030692m.g
I
0.703
Sb06g024355
Sorghum bicolor
Sb06g024355
I
0.703
Cla019618
Citrullus lanatus
Cla019618
I
0.703
Cucsa.156890
Cucumis sativus
Cucsa.156890
I
0.703
Solyc12g042210.1
Solanum lycopersicum
Solyc12g042210.1
I
0.703
Pavir.Ga01099
Panicum virgatum
Pavir.Ga01099
I
0.703
Ciclev10003903m.g
Citrus clementina
Ciclev10003903m.g
I
0.701
POPTR_0003s15030
Populus trichocarpa
POPTR_0003s15030
I
0.701
orange1.1g005229m.g
Citrus sinensis
orange1.1g005229m.g
I
0.701
PRUPE_ppa010186mg
Prunus persica
PRUPE_ppa010186mg
I
0.701
Pm019546
Prunus mume
Pm019546
I
0.701
TCM_014845
Theobroma cacao
TCM_014845
I
0.701
Gorai.001G051300
Gossypium raimondii
Gorai.001G051300
I
0.701
Cla007205
Citrullus lanatus
Cla007205
I
0.700
LPERR04G16740
Leersia perrieri
LPERR04G16740
I
0.700
SapurV1A.3099s0010
Salix purpurea
SapurV1A.3099s0010
I
0.700
Cucsa.349200
Cucumis sativus
Cucsa.349200
I
0.700
Traes_2AL_158F8EE88
Triticum aestivum
Traes_2AL_158F8EE88
I
0.699
A5JTT1_WHEAT
Triticum aestivum
A5JTT1_WHEAT
D
0.699
Traes_2BL_CF47A74CC
Triticum aestivum
Traes_2BL_CF47A74CC
I
0.699
GLYMA02G07310
Glycine max
GLYMA02G07310
I
0.698
GLYMA16G05190
Glycine max
GLYMA16G05190
I
0.698
TCM_017352
Theobroma cacao
TCM_017352
I
0.698
GLYMA16G26320
Glycine max
GLYMA16G26320
I
0.698
GLYMA19G27790
Glycine max
GLYMA19G27790
I
0.698
e_gw1.357.22.1
Physcomitrella patens
e_gw1.357.22.1
I
0.698
VIT_16s0013g00890
Vitis vinifera
VIT_16s0013g00890
I
0.697
Eucgr.A02924
Eucalyptus grandis
Eucgr.A02924
I
0.697
cassava10717.m1
Manihot esculenta
cassava10717.m1
I
0.697
OS02G0654700
Oryza sativa
OS02G0654700
I
0.697
ORGLA02G0226500
Oryza glaberrima
ORGLA02G0226500
I
0.697
ORUFI02G27830
Oryza rufipogon
ORUFI02G27830
I
0.697
OMERI02G25760
Oryza meridionalis
OMERI02G25760
I
0.697
LPERR02G21460
Leersia perrieri
LPERR02G21460
I
0.697
OPUNC02G24070
Oryza punctata
OPUNC02G24070
I
0.697
OGLUM02G26840
Oryza glumaepatula
OGLUM02G26840
I
0.697
BGIOSGA005915
Oryza indica
BGIOSGA005915
I
0.697
ONIVA02G28810
Oryza nivara
ONIVA02G28810
I
0.697
evm.TU.supercontig_13.250
Carica papaya
evm.TU.supercontig_13.250
I
0.696
Aquca_043_00039
Aquilegia coerulea
Aquca_043_00039
I
0.696
Bra021048
Brassica rapa
Bra021048
I
0.695
Cagra.3675s0007
Capsella grandiflora
Cagra.3675s0007
I
0.695
Bo8g049470
Brassica oleracea
Bo8g049470
I
0.695
Thhalv10001003m.g
Eutrema salsugineum
Thhalv10001003m.g
I
0.695
Carubv10005497m.g
Capsella rubella
Carubv10005497m.g
I
0.695
Carubv10027108m.g
Capsella rubella
Carubv10027108m.g
I
0.695
ATERF-1
Arabidopsis lyrata
fgenesh2_kg.7__2559__AT4G17500.1
I
0.695
Bostr.30275s0207
Boechera stricta
Bostr.30275s0207
I
0.695
ERF1A
Arabidopsis thaliana
AT4G17500
D
0.695
Bra021047
Brassica rapa
Bra021047
I
0.695
Cagra.3356s0041
Capsella grandiflora
Cagra.3356s0041
I
0.695
Aquca_067_00004
Aquilegia coerulea
Aquca_067_00004
I
0.695
cassava45576.m1
Manihot esculenta
cassava45576.m1
I
0.694
ERF2_TOBAC
Nicotiana tabacum
ERF2_TOBAC
D
0.694
gw1.25.154.1
Physcomitrella patens
gw1.25.154.1
I
0.694
30131.m006971
Ricinus communis
30131.m006971
I
0.694
chr1.CM1880.220.nd
Lotus japonicus
chr1.CM1880.220.nd
I
0.694
Thhalv10015583m.g
Eutrema salsugineum
Thhalv10015583m.g
I
0.693
fgenesh2_kg.6__690__AT5G07310.1
Arabidopsis lyrata
fgenesh2_kg.6__690__AT5G07310.1
I
0.693
Cagra.2662s0009
Capsella grandiflora
Cagra.2662s0009
I
0.693
chr1.CM0094.670.nd
Lotus japonicus
chr1.CM0094.670.nd
I
0.693
ERF115
Arabidopsis thaliana
AT5G07310
D
0.693
Carubv10002723m.g
Capsella rubella
Carubv10002723m.g
I
0.693
Bostr.13129s0235
Boechera stricta
Bostr.13129s0235
I
0.693
Bo3g004290
Brassica oleracea
Bo3g004290
I
0.693
gene06407-v1.0-hybrid
Fragaria vesca
gene06407-v1.0-hybrid
I
0.693
SapurV1A.0517s0130
Salix purpurea
SapurV1A.0517s0130
I
0.693
SapurV1A.0059s0630
Salix purpurea
SapurV1A.0059s0630
I
0.693
GLYMA06G17180
Glycine max
GLYMA06G17180
I
0.693
cassava19959.m1
Manihot esculenta
cassava19959.m1
I
0.693
POPTR_0012s11030
Populus trichocarpa
POPTR_0012s11030
I
0.693
Bo9g175390
Brassica oleracea
Bo9g175390
I
0.693
Bra005932
Brassica rapa
Bra005932
I
0.693
TCM_014762
Theobroma cacao
TCM_014762
I
0.693
Bra009272
Brassica rapa
Bra009272
I
0.693
Pm024604
Prunus mume
Pm024604
I
0.692
PGSC0003DMG400016006
Solanum tuberosum
PGSC0003DMG400016006
I
0.692
VIT_14s0068g01040
Vitis vinifera
VIT_14s0068g01040
I
0.692
Solyc05g052050.1
Solanum lycopersicum
Solyc05g052050.1
I
0.692
Pm023376
Prunus mume
Pm023376
I
0.691
Cucsa.321160
Cucumis sativus
Cucsa.321160
I
0.691
28192.m000255
Ricinus communis
28192.m000255
I
0.691
cassava4871.m1
Manihot esculenta
cassava4871.m1
I
0.691
Lus10004368.g
Linum usitatissimum
Lus10004368.g
I
0.691
orange1.1g044938m.g
Citrus sinensis
orange1.1g044938m.g
I
0.691
GLYMA17G15480
Glycine max
GLYMA17G15480
I
0.691
GSMUA_Achr11G20930_001
Musa acuminata
GSMUA_Achr11G20930_001
I
0.691
GSMUA_Achr5G21050_001
Musa acuminata
GSMUA_Achr5G21050_001
I
0.691
MDP0000787281
Malus domestica
MDP0000787281
I
0.691
GLYMA11G03910
Glycine max
GLYMA11G03910
I
0.691
GLYMA05G05180
Glycine max
GLYMA05G05180
I
0.691
PK29475.1
Cannabis sativa
PK29475.1
I
0.691
LjSGA_146586.1
Lotus japonicus
LjSGA_146586.1
I
0.691
Bo2g008570
Brassica oleracea
Bo2g008570
I
0.691
SapurV1A.1153s0050
Salix purpurea
SapurV1A.1153s0050
I
0.691
GLYMA01G41520
Glycine max
GLYMA01G41520
I
0.691
MDP0000665685
Malus domestica
MDP0000665685
I
0.691
MDP0000517257
Malus domestica
MDP0000517257
I
0.691
gene10841-v1.0-hybrid
Fragaria vesca
gene10841-v1.0-hybrid
I
0.691
Gorai.004G195300
Gossypium raimondii
Gorai.004G195300
I
0.691
TCM_015898
Theobroma cacao
TCM_015898
I
0.691
VIT_02s0234g00130
Vitis vinifera
VIT_02s0234g00130
I
0.691
Ciclev10021652m.g
Citrus clementina
Ciclev10021652m.g
I
0.691
Gorai.006G214100
Gossypium raimondii
Gorai.006G214100
I
0.691
PRUPE_ppa009707mg
Prunus persica
PRUPE_ppa009707mg
I
0.691
MTR_4g100380
Medicago truncatula
MTR_4g100380
I
0.691
MDP0000299277
Malus domestica
MDP0000299277
I
0.691
POPTR_0001s15390
Populus trichocarpa
POPTR_0001s15390
I
0.691
POPTR_0003s07910
Populus trichocarpa
POPTR_0003s07910
I
0.691
PRUPE_ppa008772mg
Prunus persica
PRUPE_ppa008772mg
I
0.691
Cla005705
Citrullus lanatus
Cla005705
I
0.691
Cla003706
Citrullus lanatus
Cla003706
I
0.690
GSMUA_Achr2G17810_001
Musa acuminata
GSMUA_Achr2G17810_001
I
0.690
Cucsa.129630
Cucumis sativus
Cucsa.129630
I
0.690
MDP0000894895
Malus domestica
MDP0000894895
I
0.689
Ciclev10005891m.g
Citrus clementina
Ciclev10005891m.g
I
0.689
MTR_3g098580
Medicago truncatula
MTR_3g098580
I
0.689
Gorai.008G210600
Gossypium raimondii
Gorai.008G210600
I
0.689
Bra022115
Brassica rapa
Bra022115
I
0.689
Bo2g132270
Brassica oleracea
Bo2g132270
I
0.689
Ca_01387
Cicer arietinum
Ca_01387
I
0.689
orange1.1g028566m.g
Citrus sinensis
orange1.1g028566m.g
I
0.689
GRMZM2G016434
Zea mays
GRMZM2G016434
I
0.689
PDK_20s1354201g001
Phoenix dactylifera
PDK_20s1354201g001
I
0.689
Bostr.14419s0016
Boechera stricta
Bostr.14419s0016
I
0.689
SELMODRAFT_73164
Selaginella moellendorffii
SELMODRAFT_73164
I
0.688
Bo1g017590
Brassica oleracea
Bo1g017590
I
0.688
mgf026054m
Mimulus guttatus
mgf026054m
I
0.688
SELMODRAFT_73169
Selaginella moellendorffii
SELMODRAFT_73169
I
0.688
Eucgr.I00292
Eucalyptus grandis
Eucgr.I00292
I
0.687
30147.m014331
Ricinus communis
30147.m014331
I
0.687
BRADI3G50490
Brachypodium distachyon
BRADI3G50490
I
0.686
Gorai.004G195000
Gossypium raimondii
Gorai.004G195000
I
0.685
Gorai.004G195100
Gossypium raimondii
Gorai.004G195100
I
0.685
Gorai.004G195200
Gossypium raimondii
Gorai.004G195200
I
0.685
29900.m001561
Ricinus communis
29900.m001561
I
0.685
Ciclev10018158m.g
Citrus clementina
Ciclev10018158m.g
I
0.685
Thhalv10027401m.g
Eutrema salsugineum
Thhalv10027401m.g
I
0.685
Gorai.008G232500
Gossypium raimondii
Gorai.008G232500
I
0.685
Ca_12775
Cicer arietinum
Ca_12775
I
0.685
MTR_2g015050
Medicago truncatula
MTR_2g015050
I
0.685
Sb04g033105
Sorghum bicolor
Sb04g033105
I
0.684
Pavir.Aa01184
Panicum virgatum
Pavir.Aa01184
I
0.684
GRMZM2G466044
Zea mays
GRMZM2G466044
I
0.684
Pavir.Ab02556
Panicum virgatum
Pavir.Ab02556
I
0.684
TCM_015902
Theobroma cacao
TCM_015902
I
0.683
MDP0000668122
Malus domestica
MDP0000668122
I
0.682
Bra029302
Brassica rapa
Bra029302
I
0.682
Bo2g161710
Brassica oleracea
Bo2g161710
I
0.682
scaffold_802838.1
Arabidopsis lyrata
scaffold_802838.1
I
0.682
Cagra.4553s0019
Capsella grandiflora
Cagra.4553s0019
I
0.682
Bo3g109240
Brassica oleracea
Bo3g109240
I
0.682
Thhalv10005416m.g
Eutrema salsugineum
Thhalv10005416m.g
I
0.682
ERF114
Arabidopsis thaliana
AT5G61890
I
0.682
Carubv10027012m.g
Capsella rubella
Carubv10027012m.g
I
0.682
Bostr.26833s0047
Boechera stricta
Bostr.26833s0047
I
0.682
POPTR_0011s06010
Populus trichocarpa
POPTR_0011s06010
I
0.681
LPERR11G03740
Leersia perrieri
LPERR11G03740
I
0.681
mgf023779m
Mimulus guttatus
mgf023779m
I
0.681
Gorai.013G186700
Gossypium raimondii
Gorai.013G186700
I
0.681
chr4.CM0175.50.nd
Lotus japonicus
chr4.CM0175.50.nd
I
0.680
Solyc03g093610.1
Solanum lycopersicum
Solyc03g093610.1
I
0.680
Gorai.007G045100
Gossypium raimondii
Gorai.007G045100
I
0.680
Gorai.005G197100
Gossypium raimondii
Gorai.005G197100
I
0.680
PGSC0003DMG400010750
Solanum tuberosum
PGSC0003DMG400010750
I
0.680
Si017941m.g
Setaria italica
Si017941m.g
I
0.680
TCM_008334
Theobroma cacao
TCM_008334
I
0.680
Gorai.008G075600
Gossypium raimondii
Gorai.008G075600
I
0.679
Ca_19135
Cicer arietinum
Ca_19135
I
0.679
PGSC0003DMG400026260
Solanum tuberosum
PGSC0003DMG400026260
I
0.679
Solyc08g078170.1
Solanum lycopersicum
Solyc08g078170.1
I
0.679
Thhalv10014575m.g
Eutrema salsugineum
Thhalv10014575m.g
I
0.678
SapurV1A.0107s0450
Salix purpurea
SapurV1A.0107s0450
I
0.678
Cucsa.321150
Cucumis sativus
Cucsa.321150
I
0.678
Bo2g011200
Brassica oleracea
Bo2g011200
I
0.678
Rap2.6L
Arabidopsis lyrata
fgenesh2_kg.6__1285__AT5G13330.1
I
0.678
Gorai.003G176200
Gossypium raimondii
Gorai.003G176200
I
0.678
Bra023404
Brassica rapa
Bra023404
I
0.678
SapurV1A.0886s0020
Salix purpurea
SapurV1A.0886s0020
I
0.678
Bostr.2902s0068
Boechera stricta
Bostr.2902s0068
I
0.678
Carubv10001831m.g
Capsella rubella
Carubv10001831m.g
I
0.678
ERF113
Arabidopsis thaliana
AT5G13330
D
0.678
ERF2
Arabidopsis thaliana
AT5G47220
D
0.677
TCM_026233
Theobroma cacao
TCM_026233
I
0.677
MDP0000322279
Malus domestica
MDP0000322279
I
0.677
Gorai.007G281000
Gossypium raimondii
Gorai.007G281000
I
0.677
GSMUA_Achr6G27040_001
Musa acuminata
GSMUA_Achr6G27040_001
I
0.677
Ca_21773
Cicer arietinum
Ca_21773
I
0.677