Cagra.1613s0010 (Capsella grandiflora)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Cagra.1613s0010 T007736_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERF096
M01630_2.00 		Arabidopsis thaliana
NVGCCGNCNN
NNGNCGGCBN		 PBM
Weirauch et al.(2014)
pTH7909 		0.682 0.659
ERF105
M01632_2.00 		Arabidopsis thaliana
CGCCGGCM
KGCCGGCG		 PBM
Weirauch et al.(2014)
pTH7233 		0.680 0.659
ERF105
M06676_2.00 		Arabidopsis thaliana
NHNNNNNNNNHNNHDBCGCCGCCR
YGGCGGCGVHDNNDNNNNNNNNDN		 Dap-seq
OMalley et al.(2016)
ERF105_colamp_a 		0.680 0.659
ERF105
M06677_2.00 		Arabidopsis thaliana
HDSCGCCGCCRYHDH
DHDRYGGCGGCGSHD		 Dap-seq
OMalley et al.(2016)
ERF105_col 		0.680 0.659
ERF10
M06562_2.00 		Arabidopsis thaliana
NNHNNHNHHDYCGCCGCCRYN
NRYGGCGGCGRHDDNDNNDNN		 Dap-seq
OMalley et al.(2016)
ERF10_col_a 		0.679 0.659
ERF10
M06563_2.00 		Arabidopsis thaliana
HDSCGCCGCCRHHDNNNNNN
NNNNNNHDDYGGCGGCGSHD		 Dap-seq
OMalley et al.(2016)
ERF10_colamp_a 		0.679 0.659
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.1613s0010.1.p AP2 92 138

Links

Other AP2 family TFs
Other Capsella grandiflora TFs

197 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Carubv10012513m.g Capsella rubella Carubv10012513m.g I 0.798
Thhalv10012016m.g Eutrema salsugineum Thhalv10012016m.g I 0.758
ERF117 Arabidopsis thaliana AT1G49120 I 0.727
fgenesh2_kg.1__4007__AT1G49120.1 Arabidopsis lyrata fgenesh2_kg.1__4007__AT1G49120.1 I 0.721
CHLREDRAFT_190235 Chlamydomonas reinhardtii CHLREDRAFT_190235 I 0.711
fgenesh4_pg.C_scaffold_15000094 Volvox carteri fgenesh4_pg.C_scaffold_15000094 I 0.710
Bostr.26675s0265 Boechera stricta Bostr.26675s0265 I 0.709
Bra032665 Brassica rapa Bra032665 I 0.704
Bo8g118250 Brassica oleracea Bo8g118250 I 0.704
Gorai.009G165400 Gossypium raimondii Gorai.009G165400 I 0.702
Gorai.008G286700 Gossypium raimondii Gorai.008G286700 I 0.700
PRUPE_ppa022995mg Prunus persica PRUPE_ppa022995mg I 0.693
Pm000232 Prunus mume Pm000232 I 0.693
PRUPE_ppa025495mg Prunus persica PRUPE_ppa025495mg I 0.693
MDP0000190504 Malus domestica MDP0000190504 I 0.693
Ciclev10002183m.g Citrus clementina Ciclev10002183m.g I 0.692
orange1.1g043400m.g Citrus sinensis orange1.1g043400m.g I 0.692
Bra004548 Brassica rapa Bra004548 I 0.692
Eucgr.B00720 Eucalyptus grandis Eucgr.B00720 I 0.692
OBART05G13390 Oryza barthii OBART05G13390 I 0.691
AMTR_s00129p00112550 Amborella trichopoda AMTR_s00129p00112550 I 0.691
Pavir.Fb00951 Panicum virgatum Pavir.Fb00951 I 0.689
Pavir.Fa01728 Panicum virgatum Pavir.Fa01728 I 0.689
Sb02g029550 Sorghum bicolor Sb02g029550 I 0.689
GRMZM2G131281 Zea mays GRMZM2G131281 I 0.688
ONIVA02G20420 Oryza nivara ONIVA02G20420 I 0.688
Thhalv10025693m.g Eutrema salsugineum Thhalv10025693m.g I 0.688
evm.TU.supercontig_50.29 Carica papaya evm.TU.supercontig_50.29 I 0.688
Si030810m.g Setaria italica Si030810m.g I 0.687
ONIVA05G14090 Oryza nivara ONIVA05G14090 I 0.686
OGLUM05G14230 Oryza glumaepatula OGLUM05G14230 I 0.686
OPUNC05G11600 Oryza punctata OPUNC05G11600 I 0.686
OB05G21350 Oryza brachyantha OB05G21350 I 0.686
MLOC_64636 Hordeum vulgare MLOC_64636 I 0.686
Pavir.Ca00939 Panicum virgatum Pavir.Ca00939 I 0.686
Pavir.J34156 Panicum virgatum Pavir.J34156 I 0.686
Gorai.010G156500 Gossypium raimondii Gorai.010G156500 I 0.686
Gorai.008G219300 Gossypium raimondii Gorai.008G219300 I 0.686
ORUFI05G14490 Oryza rufipogon ORUFI05G14490 I 0.686
OS05G0361700 Oryza sativa OS05G0361700 I 0.686
ORGLA05G0114900 Oryza glaberrima ORGLA05G0114900 I 0.686
Si024258m.g Setaria italica Si024258m.g I 0.686
Bo4g009400 Brassica oleracea Bo4g009400 I 0.686
BGIOSGA019701 Oryza indica BGIOSGA019701 I 0.686
Eucgr.H03090 Eucalyptus grandis Eucgr.H03090 I 0.685
cassava38545.m1 Manihot esculenta cassava38545.m1 I 0.685
PGSC0003DMG400046646 Solanum tuberosum PGSC0003DMG400046646 I 0.685
Solyc09g089920.1 Solanum lycopersicum Solyc09g089920.1 I 0.685
Carubv10012164m.g Capsella rubella Carubv10012164m.g I 0.684
MTR_4g088005 Medicago truncatula MTR_4g088005 I 0.684
Cagra.2231s0001 Capsella grandiflora Cagra.2231s0001 I 0.684
Bostr.15697s0023 Boechera stricta Bostr.15697s0023 I 0.684
POPTR_0017s04540 Populus trichocarpa POPTR_0017s04540 I 0.684
CHLREDRAFT_167010 Chlamydomonas reinhardtii CHLREDRAFT_167010 I 0.684
Solyc02g077360.1 Solanum lycopersicum Solyc02g077360.1 I 0.684
ESR2 Arabidopsis thaliana AT1G24590 I 0.684
DRNL Arabidopsis lyrata scaffold_103004.1 I 0.684
orange1.1g037347m.g Citrus sinensis orange1.1g037347m.g I 0.683
Carubv10011371m.g Capsella rubella Carubv10011371m.g I 0.683
GLYMA13G30710 Glycine max GLYMA13G30710 I 0.683
Cagra.0897s0005 Capsella grandiflora Cagra.0897s0005 I 0.683
TCM_029772 Theobroma cacao TCM_029772 I 0.683
cassava46560.m1 Manihot esculenta cassava46560.m1 I 0.683
POPTR_0011s06020 Populus trichocarpa POPTR_0011s06020 I 0.683
POPTR_0004s05110 Populus trichocarpa POPTR_0004s05110 I 0.683
Traes_6BS_4C945B9F1 Triticum aestivum Traes_6BS_4C945B9F1 I 0.683
GLYMA03G26480 Glycine max GLYMA03G26480 I 0.683
SapurV1A.0012s0900 Salix purpurea SapurV1A.0012s0900 I 0.683
VIT_07s0005g03200 Vitis vinifera VIT_07s0005g03200 I 0.683
evm.TU.supercontig_7.36 Carica papaya evm.TU.supercontig_7.36 I 0.683
Eucgr.E03167 Eucalyptus grandis Eucgr.E03167 I 0.683
cassava3045.m1 Manihot esculenta cassava3045.m1 I 0.683
GSMUA_Achr11G19880_001 Musa acuminata GSMUA_Achr11G19880_001 I 0.683
GSMUA_Achr7G21980_001 Musa acuminata GSMUA_Achr7G21980_001 I 0.683
29983.m003147 Ricinus communis 29983.m003147 I 0.683
Eucgr.E02652 Eucalyptus grandis Eucgr.E02652 I 0.683
CM1489.100.nc Lotus japonicus CM1489.100.nc I 0.683
Ciclev10018130m.g Citrus clementina Ciclev10018130m.g I 0.683
AMTR_s00021p00185480 Amborella trichopoda AMTR_s00021p00185480 I 0.683
ERF096 Arabidopsis thaliana AT5G43410 D 0.682
Thhalv10003355m.g Eutrema salsugineum Thhalv10003355m.g I 0.682
Bra040839 Brassica rapa Bra040839 I 0.682
SapurV1A.2062s0030 Salix purpurea SapurV1A.2062s0030 I 0.682
scaffold_800707.1 Arabidopsis lyrata scaffold_800707.1 I 0.682
Bra027493 Brassica rapa Bra027493 I 0.682
LPERR03G32900 Leersia perrieri LPERR03G32900 I 0.682
Si008428m.g Setaria italica Si008428m.g I 0.682
Carubv10028227m.g Capsella rubella Carubv10028227m.g I 0.682
OMERI03G03710 Oryza meridionalis OMERI03G03710 I 0.682
Bo9g059180 Brassica oleracea Bo9g059180 I 0.682
Bostr.3148s0125 Boechera stricta Bostr.3148s0125 I 0.682
Cagra.0244s0009 Capsella grandiflora Cagra.0244s0009 I 0.682
BRADI2G27920 Brachypodium distachyon BRADI2G27920 I 0.682
cassava32131.m1 Manihot esculenta cassava32131.m1 I 0.682
SapurV1A.0021s0990 Salix purpurea SapurV1A.0021s0990 I 0.681
TCM_012330 Theobroma cacao TCM_012330 I 0.681
SapurV1A.0292s0010 Salix purpurea SapurV1A.0292s0010 I 0.681
GSMUA_Achr4G12070_001 Musa acuminata GSMUA_Achr4G12070_001 I 0.681
Lus10039857.g Linum usitatissimum Lus10039857.g I 0.681
GLYMA15G08580 Glycine max GLYMA15G08580 I 0.681
PGSC0003DMG400010719 Solanum tuberosum PGSC0003DMG400010719 I 0.681
TRIUR3_07811 Triticum urartu TRIUR3_07811 I 0.681
Thhalv10014591m.g Eutrema salsugineum Thhalv10014591m.g I 0.681
POPTR_0008s16600 Populus trichocarpa POPTR_0008s16600 I 0.681
PRUPE_ppa022010mg Prunus persica PRUPE_ppa022010mg I 0.681
Pm010367 Prunus mume Pm010367 I 0.681
Bo7g111760 Brassica oleracea Bo7g111760 I 0.681
AMTR_s00009p00147970 Amborella trichopoda AMTR_s00009p00147970 I 0.681
Cucsa.046660 Cucumis sativus Cucsa.046660 I 0.680
Bostr.15774s0262 Boechera stricta Bostr.15774s0262 I 0.680
gene11440-v1.0-hybrid Fragaria vesca gene11440-v1.0-hybrid I 0.680
gene00975-v1.0-hybrid Fragaria vesca gene00975-v1.0-hybrid I 0.680
orange1.1g047241m.g Citrus sinensis orange1.1g047241m.g I 0.680
Bo5g127380 Brassica oleracea Bo5g127380 I 0.680
MDP0000324718 Malus domestica MDP0000324718 I 0.680
Ciclev10007133m.g Citrus clementina Ciclev10007133m.g I 0.680
Carubv10027246m.g Capsella rubella Carubv10027246m.g I 0.680
29584.m000237 Ricinus communis 29584.m000237 I 0.680
Bostr.15774s0261 Boechera stricta Bostr.15774s0261 I 0.680
Bra027270 Brassica rapa Bra027270 I 0.680
ERF105 Arabidopsis thaliana AT5G51190 D 0.680
Cagra.0381s0006 Capsella grandiflora Cagra.0381s0006 I 0.680
Aquca_013_00162 Aquilegia coerulea Aquca_013_00162 I 0.680
TCM_020870 Theobroma cacao TCM_020870 I 0.680
Pm011391 Prunus mume Pm011391 I 0.680
PRUPE_ppa010982mg Prunus persica PRUPE_ppa010982mg I 0.680
GLYMA02G00890 Glycine max GLYMA02G00890 I 0.680
MTR_2g078680 Medicago truncatula MTR_2g078680 I 0.680
GSMUA_Achr5G27850_001 Musa acuminata GSMUA_Achr5G27850_001 I 0.680
Si015420m.g Setaria italica Si015420m.g I 0.680
Ca_00360 Cicer arietinum Ca_00360 I 0.680
VIT_10s0003g00590 Vitis vinifera VIT_10s0003g00590 I 0.680
Cla009822 Citrullus lanatus Cla009822 I 0.680
Gorai.008G214000 Gossypium raimondii Gorai.008G214000 I 0.679
GRMZM2G060517 Zea mays GRMZM2G060517 I 0.679
Bo8g053000 Brassica oleracea Bo8g053000 I 0.679
ERF10 Arabidopsis thaliana AT1G03800 D 0.679
Bra010389 Brassica rapa Bra010389 I 0.679
Pavir.Bb01308 Panicum virgatum Pavir.Bb01308 I 0.679
PGSC0003DMG400045092 Solanum tuberosum PGSC0003DMG400045092 I 0.679
Si032391m.g Setaria italica Si032391m.g I 0.679
Solyc11g006050.1 Solanum lycopersicum Solyc11g006050.1 I 0.679
PDK_20s1325661g001 Phoenix dactylifera PDK_20s1325661g001 I 0.679
cassava41615.m1 Manihot esculenta cassava41615.m1 I 0.679
OB09G27120 Oryza brachyantha OB09G27120 I 0.678
OBART04G05450 Oryza barthii OBART04G05450 I 0.678
OGLUM04G04620 Oryza glumaepatula OGLUM04G04620 I 0.678
OBART09G20380 Oryza barthii OBART09G20380 I 0.678
LPERR09G16370 Leersia perrieri LPERR09G16370 I 0.678
BGIOSGA029230 Oryza indica BGIOSGA029230 I 0.678
GSMUA_Achr1G15350_001 Musa acuminata GSMUA_Achr1G15350_001 I 0.678
Bo1g051080 Brassica oleracea Bo1g051080 I 0.678
OGLUM09G21140 Oryza glumaepatula OGLUM09G21140 I 0.678
GRMZM2G175525 Zea mays GRMZM2G175525 I 0.678
OB04G14270 Oryza brachyantha OB04G14270 I 0.678
Bra026295 Brassica rapa Bra026295 I 0.678
OS04G0257500 Oryza sativa OS04G0257500 I 0.678
ORUFI09G22030 Oryza rufipogon ORUFI09G22030 I 0.678
OS09G0571700 Oryza sativa OS09G0571700 I 0.678
mgf018935m Mimulus guttatus mgf018935m I 0.678
cassava32306.m1 Manihot esculenta cassava32306.m1 I 0.678
Pavir.Ia00165 Panicum virgatum Pavir.Ia00165 I 0.678
OLONG_005596 Oryza longistaminata OLONG_005596 I 0.678
ORUFI04G06330 Oryza rufipogon ORUFI04G06330 I 0.678
ONIVA01G39370 Oryza nivara ONIVA01G39370 I 0.678
OLONG_027600 Oryza longistaminata OLONG_027600 I 0.678
BGIOSGA015474 Oryza indica BGIOSGA015474 I 0.678
ORGLA09G0166700 Oryza glaberrima ORGLA09G0166700 I 0.678
ONIVA04G03680 Oryza nivara ONIVA04G03680 I 0.678
ORGLA04G0041100 Oryza glaberrima ORGLA04G0041100 I 0.678
OPUNC09G18680 Oryza punctata OPUNC09G18680 I 0.678
Pavir.J16062 Panicum virgatum Pavir.J16062 I 0.677
LjSGA_028626.1 Lotus japonicus LjSGA_028626.1 I 0.677
Thhalv10005566m.g Eutrema salsugineum Thhalv10005566m.g I 0.677
Cla015064 Citrullus lanatus Cla015064 I 0.677
ERF104 Arabidopsis lyrata fgenesh2_kg.8__2143__AT5G61600.1 I 0.677
F775_23071 Aegilops tauschii F775_23071 I 0.677
Sb05g001280 Sorghum bicolor Sb05g001280 I 0.677
TCM_004062 Theobroma cacao TCM_004062 I 0.677
GLYMA10G33080 Glycine max GLYMA10G33080 I 0.677
GLYMA16G26460 Glycine max GLYMA16G26460 I 0.677
LPERR04G03550 Leersia perrieri LPERR04G03550 I 0.677
MLOC_40486 Hordeum vulgare MLOC_40486 I 0.677
GRMZM2G060465 Zea mays GRMZM2G060465 I 0.677
GLYMA20G34550 Glycine max GLYMA20G34550 I 0.677
TCM_020869 Theobroma cacao TCM_020869 I 0.677
Traes_4AS_FA4BBDBF9 Triticum aestivum Traes_4AS_FA4BBDBF9 I 0.677
Ciclev10016995m.g Citrus clementina Ciclev10016995m.g I 0.677
Gorai.001G176600 Gossypium raimondii Gorai.001G176600 I 0.677
Gorai.005G049200 Gossypium raimondii Gorai.005G049200 I 0.677
Gorai.006G249800 Gossypium raimondii Gorai.006G249800 I 0.677
Bostr.26833s0076 Boechera stricta Bostr.26833s0076 I 0.677
e_gw1.31.217.1 Physcomitrella patens e_gw1.31.217.1 I 0.677
Traes_4BS_180379032 Triticum aestivum Traes_4BS_180379032 I 0.677
Traes_4DS_AB2BEFAB3 Triticum aestivum Traes_4DS_AB2BEFAB3 I 0.677
TRIUR3_22798 Triticum urartu TRIUR3_22798 I 0.677
orange1.1g031071m.g Citrus sinensis orange1.1g031071m.g I 0.677