CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Carubv10018526m.g
(
Capsella rubella
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00847 (AP2)
IPR001471
Carubv10018526m.g
T007894_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
SMZ
M08402_2.00
Arabidopsis thaliana
YCTCGTAC
GTACGAGR
ChIP-chip
Mathelier et al.(2014)
MA0553.1
0.869
1.000
TOE2
M00851_2.00
Arabidopsis thaliana
NNNNTACGAGGWN
NWCCTCGTANNNN
PBM
Franco-Zorrilla et al.(2014)
TOE2
0.855
0.959
For this family, TFs with SR scores >
0.677
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Carubv10018526m
AP2
123
173
SQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAYAAARAYDRAAIKFRGL
Links
Other
AP2
family TFs
Other
Capsella rubella
TFs
42 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
ENSAMEG00000000176
Ailuropoda melanoleuca
ENSAMEG00000000176
N
0.000
ZNF792
Callithrix jacchus
ENSCJAG00000010750
N
0.000
ZNF599
Dasypus novemcinctus
ENSDNOG00000004172
N
0.000
ZNF599
Equus caballus
ENSECAG00000013471
N
0.000
ZNF599
Gorilla gorilla
ENSGGOG00000012378
N
0.000
ZNF599
Homo sapiens
ENSG00000153896
N
0.000
ENSP00000333802
Macaca fascicularis
ENSP00000333802
N
0.000
ZNF599
Macaca mulatta
ENSMMUG00000006440
N
0.000
ENSMPUG00000007415
Mustela putorius furo
ENSMPUG00000007415
N
0.000
ENSNLEG00000010836
Nomascus leucogenys
ENSNLEG00000010836
N
0.000
ENSOARG00000004631
Ovis aries
ENSOARG00000004631
N
0.000
ZNF599
Pan troglodytes
ENSPTRG00000010820
N
0.000
ENSPANG00000007896
Papio anubis
ENSPANG00000007896
N
0.000
ENSPPYG00000009842
Pongo abelii
ENSPPYG00000009842
N
0.000
ZNF599
Tupaia belangeri
ENSTBEG00000005491
N
0.000
ZNF599
Tursiops truncatus
ENSTTRG00000002936
N
0.000