Carubv10018526m.g (Capsella rubella)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Carubv10018526m.g T007894_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SMZ
M08402_2.00 		Arabidopsis thaliana
YCTCGTAC
GTACGAGR		 ChIP-chip
Mathelier et al.(2014)
MA0553.1 		0.869 1.000
TOE2
M00851_2.00 		Arabidopsis thaliana
NNNNTACGAGGWN
NWCCTCGTANNNN		 PBM
Franco-Zorrilla et al.(2014)
TOE2 		0.855 0.959
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10018526m AP2 123 173

Links

Other AP2 family TFs
Other Capsella rubella TFs

42 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000000176 Ailuropoda melanoleuca ENSAMEG00000000176 N 0.000
ZNF792 Callithrix jacchus ENSCJAG00000010750 N 0.000
ZNF599 Dasypus novemcinctus ENSDNOG00000004172 N 0.000
ZNF599 Equus caballus ENSECAG00000013471 N 0.000
ZNF599 Gorilla gorilla ENSGGOG00000012378 N 0.000
ZNF599 Homo sapiens ENSG00000153896 N 0.000
ENSP00000333802 Macaca fascicularis ENSP00000333802 N 0.000
ZNF599 Macaca mulatta ENSMMUG00000006440 N 0.000
ENSMPUG00000007415 Mustela putorius furo ENSMPUG00000007415 N 0.000
ENSNLEG00000010836 Nomascus leucogenys ENSNLEG00000010836 N 0.000
ENSOARG00000004631 Ovis aries ENSOARG00000004631 N 0.000
ZNF599 Pan troglodytes ENSPTRG00000010820 N 0.000
ENSPANG00000007896 Papio anubis ENSPANG00000007896 N 0.000
ENSPPYG00000009842 Pongo abelii ENSPPYG00000009842 N 0.000
ZNF599 Tupaia belangeri ENSTBEG00000005491 N 0.000
ZNF599 Tursiops truncatus ENSTTRG00000002936 N 0.000