Carubv10018526m.g (Capsella rubella)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Carubv10018526m.g T007894_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SMZ
M08402_2.00 		Arabidopsis thaliana
YCTCGTAC
GTACGAGR		 ChIP-chip
Mathelier et al.(2014)
MA0553.1 		0.869 1.000
TOE2
M00851_2.00 		Arabidopsis thaliana
NNNNTACGAGGWN
NWCCTCGTANNNN		 PBM
Franco-Zorrilla et al.(2014)
TOE2 		0.855 0.959
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10018526m AP2 123 173

Links

Other AP2 family TFs
Other Capsella rubella TFs

42 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Al_scaffold_0003_2798 Arabidopsis lyrata Al_scaffold_0003_2798 I 0.688
SMZ Arabidopsis lyrata fgenesh2_kg.5__1910__AT3G54990.1 I 0.869
SNZ Arabidopsis lyrata fgenesh1_pm.C_scaffold_4001673 I 0.801
TOE2 Arabidopsis thaliana AT5G60120 D 0.855
SMZ Arabidopsis thaliana AT3G54990 D 0.869
SNZ Arabidopsis thaliana AT2G39250 I 0.801
Bostr.0697s0115 Boechera stricta Bostr.0697s0115 I 0.869
Bostr.23794s0149 Boechera stricta Bostr.23794s0149 I 0.801
Bostr.26833s0222 Boechera stricta Bostr.26833s0222 I 0.855
Bo8g087280 Brassica oleracea Bo8g087280 I 0.869
Bo6g068410 Brassica oleracea Bo6g068410 I 0.846
Bo9g141100 Brassica oleracea Bo9g141100 I 0.855
Bra020262 Brassica rapa Bra020262 I 0.855
Bra007123 Brassica rapa Bra007123 I 0.869
Bra002510 Brassica rapa Bra002510 I 0.855
PK16652.1 Cannabis sativa PK16652.1 I 0.854
Cagra.0716s0040 Capsella grandiflora Cagra.0716s0040 I 0.808
Cagra.1317s0005 Capsella grandiflora Cagra.1317s0005 I 0.855
Cagra.1742s0021 Capsella grandiflora Cagra.1742s0021 I 0.869
Carubv10023614m.g Capsella rubella Carubv10023614m.g I 0.808
Carubv10026292m.g Capsella rubella Carubv10026292m.g I 0.855
Ca_26761 Cicer arietinum Ca_26761 I 0.804
Cla020387 Citrullus lanatus Cla020387 I 0.854
Cucsa.165940 Cucumis sativus Cucsa.165940 I 0.854
Eucgr.G02793 Eucalyptus grandis Eucgr.G02793 I 0.864
Thhalv10013367m.g Eutrema salsugineum Thhalv10013367m.g I 0.855
Thhalv10010513m.g Eutrema salsugineum Thhalv10010513m.g I 0.869
gene23316-v1.0-hybrid Fragaria vesca gene23316-v1.0-hybrid I 0.817
GLYMA02G09600 Glycine max GLYMA02G09600 I 0.848
GLYMA10G22390 Glycine max GLYMA10G22390 I 0.848
Gorai.003G139800 Gossypium raimondii Gorai.003G139800 I 0.854
Gorai.011G241700 Gossypium raimondii Gorai.011G241700 I 0.854
Lus10040365.g Linum usitatissimum Lus10040365.g I 0.853
MDP0000285955 Malus domestica MDP0000285955 I 0.812
MDP0000281079 Malus domestica MDP0000281079 I 0.812
MTR_1g049140 Medicago truncatula MTR_1g049140 I 0.836
Pm018608 Prunus mume Pm018608 I 0.821
PRUPE_ppa018704mg Prunus persica PRUPE_ppa018704mg I 0.821
PGSC0003DMG400011046 Solanum tuberosum PGSC0003DMG400011046 I 0.858
PGSC0003DMG400012038 Solanum tuberosum PGSC0003DMG400012038 I 0.854
Sb10g001490 Sorghum bicolor Sb10g001490 I 0.858
GRMZM2G416701 Zea mays GRMZM2G416701 I 0.854