gene18922-v1.0-hybrid (Fragaria vesca)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 gene18922-v1.0-hybrid T008411_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
CRF2
M01622_2.00
Arabidopsis thaliana
SCGCCGCC

GGCGGCGS
PBM
Weirauch et al.(2014)
pTH8680
0.778 0.820
LOC_Os08g36920
M01634_2.00
Oryza sativa
NNNGSCGHNN

NNDCGSCNNN
PBM
Weirauch et al.(2014)
pTH8596
0.769 0.740
O65242_TOBAC
M09730_2.00
Nicotiana tabacum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$TSI1_01
0.761 0.720
CRF3
M01633_2.00
Arabidopsis thaliana
NNGCCRNNN

NNNYGGCNN
PBM
Weirauch et al.(2014)
pTH8110
0.757 0.780
CRF4
M01626_2.00
Arabidopsis thaliana
SCGCCGCC

GGCGGCGS
PBM
Weirauch et al.(2014)
pTH8261
0.754 0.760
CRF4
M06645_2.00
Arabidopsis thaliana
BMDCCGCCGCCRCHDHHDCYN

NRGHDDHDGYGGCGGCGGHKV
Dap-seq
OMalley et al.(2016)
CRF4_col_a
0.754 0.760
CRF4
M06646_2.00
Arabidopsis thaliana
YCDYCGCCGCCGYYD

HRRCGGCGGCGRHGR
Dap-seq
OMalley et al.(2016)
CRF4_colamp_a
0.754 0.760
AT2G33710
M01613_2.00
Arabidopsis thaliana
NSMGCCGHMN

NKDCGGCKSN
PBM
Weirauch et al.(2014)
pTH7543
0.745 0.720
AT2G33710
M06606_2.00
Arabidopsis thaliana
DBCGCCGCCGYHDHHDNH

DNHDDHDRCGGCGGCGVH
Dap-seq
OMalley et al.(2016)
At2g33710_colamp_a
0.745 0.720
AT2G33710
M06607_2.00
Arabidopsis thaliana
NHDYCKCCGCCGYMD

HKRCGGCGGMGRHDN
Dap-seq
OMalley et al.(2016)
At2g33710_col
0.745 0.720
A4F248_TOBAC
M09725_2.00
Nicotiana tabacum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$WRAF1_01
0.744 0.760
ERF113
M01629_2.00
Arabidopsis thaliana
NNGCCGHHNN

NNDDCGGCNN
PBM
Weirauch et al.(2014)
pTH8097
0.743 0.700
A4F249_TOBAC
M09726_2.00
Nicotiana tabacum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$WRAF2_01
0.729 0.720
Q7Y1W2_TOBAC
M09735_2.00
Nicotiana tabacum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$CEF1_01
0.717 0.700
ERF069
M01604_2.00
Arabidopsis thaliana
NNGCCGNNN

NNNCGGCNN
PBM
Weirauch et al.(2014)
pTH7550
0.713 0.760
ERF10
M06562_2.00
Arabidopsis thaliana
NNHNNHNHHDYCGCCGCCRYN

NRYGGCGGCGRHDDNDNNDNN
Dap-seq
OMalley et al.(2016)
ERF10_col_a
0.712 0.660
ERF10
M06563_2.00
Arabidopsis thaliana
HDSCGCCGCCRHHDNNNNNN

NNNNNNHDDYGGCGGCGSHD
Dap-seq
OMalley et al.(2016)
ERF10_colamp_a
0.712 0.660
ERF5
M00721_2.00
Arabidopsis thaliana
NNNGSMRNMN

NKNYKSCNNN
PBM
Chang et al.(2013)
pTH7197
0.711 0.680
ERF5
M06674_2.00
Arabidopsis thaliana
YCDYCKCCGCCGYCD

HGRCGGCGGMGRHGR
Dap-seq
OMalley et al.(2016)
ERF5_col_a
0.711 0.680
ERF5
M06675_2.00
Arabidopsis thaliana
NHDBCGCCGCCRYHDNHDNNN

NNNHDNHDRYGGCGGCGVHDN
Dap-seq
OMalley et al.(2016)
ERF5_colamp_a
0.711 0.680
ERF5_TOBAC
M09729_2.00
Nicotiana tabacum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ERF4_02
0.710 0.680
RAP2-2
M00719_2.00
Arabidopsis thaliana
NNRBYGNN

NNCRVYNN
PBM
Chang et al.(2013)
pTH7227
0.710 0.660
PK02330.1
M01095_2.00
Cannabis sativa
NNNGCCGBCN

NGVCGGCNNN
PBM
Lambert et al.(2019)
pTH10093
0.708 0.680
EREBP1
M09708_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$EREBP1_01
0.707 0.700
ERF091
M06638_2.00
Arabidopsis thaliana
NNHNYHDCCGCCGCCRY

RYGGCGGCGGHDRNDNN
Dap-seq
OMalley et al.(2016)
AT4G18450_col_a
0.704 0.640
ERF2_TOBAC
M09727_2.00
Nicotiana tabacum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ERF2_01
0.704 0.640
ERF096
M01630_2.00
Arabidopsis thaliana
NVGCCGNCNN

NNGNCGGCBN
PBM
Weirauch et al.(2014)
pTH7909
0.696 0.640
ERF4_TOBAC
M09728_2.00
Nicotiana tabacum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ERF3_02
0.692 0.660
RAP2-3
M01050_2.00
Arabidopsis thaliana
CGCCGCCR

YGGCGGCG
PBM
Sullivan et al.(2014)
pTH8811
0.690 0.660
RAP2-3
M00847_2.00
Arabidopsis thaliana
NMGCCGCCDN

NHGGCGGCKN
PBM
Franco-Zorrilla et al.(2014)
RAP2.3
0.690 0.660
Q84J59_MAIZE
M09717_2.00
Zea mays Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$BD1_01
0.687 0.600
RAP2-12
M01046_2.00
Arabidopsis thaliana
RSMGBMNNNN

NNNNKVCKSY
PBM
Sullivan et al.(2014)
pTH7359
0.687 0.640
RAP2-12
M06588_2.00
Arabidopsis thaliana
NHDCCGCCGCCRHHDHNNNHN

NDNNNDHDDYGGCGGCGGHDN
Dap-seq
OMalley et al.(2016)
RAP212_col_a
0.687 0.640
ERF105
M01632_2.00
Arabidopsis thaliana
CGCCGGCM

KGCCGGCG
PBM
Weirauch et al.(2014)
pTH7233
0.685 0.640
ERF105
M06676_2.00
Arabidopsis thaliana
NHNNNNNNNNHNNHDBCGCCGCCR

YGGCGGCGVHDNNDNNNNNNNNDN
Dap-seq
OMalley et al.(2016)
ERF105_colamp_a
0.685 0.640
ERF105
M06677_2.00
Arabidopsis thaliana
HDSCGCCGCCRYHDH

DHDRYGGCGGCGSHD
Dap-seq
OMalley et al.(2016)
ERF105_col
0.685 0.640
PK19363.1
M01100_2.00
Cannabis sativa
NMGCCGHMNN

NNKDCGGCKN
PBM
Lambert et al.(2019)
pTH10138
0.684 0.640
PK19363.1
M01643_2.00
Cannabis sativa
CGCCGYCD

HGRCGGCG
PBM
Weirauch et al.(2014)
pTH9609
0.684 0.640
ERF086
M06663_2.00
Arabidopsis thaliana
HHDYCKCCGCCGYHD

HDRCGGCGGMGRHDD
Dap-seq
OMalley et al.(2016)
PUCHI_col_a
0.683 0.620
ERF086
M06664_2.00
Arabidopsis thaliana
NNNNHDHCKCCGCCGYHDHHDHNNN

NNNDHDDHDRCGGCGGMGDHDNNNN
Dap-seq
OMalley et al.(2016)
PUCHI_colamp_a
0.683 0.620
ERF1A
M00848_2.00
Arabidopsis thaliana
NNNNRNN

NNYNNNN
PBM
Franco-Zorrilla et al.(2014)
ATERF1
0.683 0.680
ERF1A
M00720_2.00
Arabidopsis thaliana
NMGCCRNCN

NGNYGGCKN
PBM
Chang et al.(2013)
pTH7202
0.683 0.680
ERF4
M01616_2.00
Arabidopsis thaliana
VCGCCGCC

GGCGGCGB
PBM
Weirauch et al.(2014)
pTH8156
0.683 0.620
ERF4
M06616_2.00
Arabidopsis thaliana
YCDCCGCCGCCRHHD

HDDYGGCGGCGGHGR
Dap-seq
OMalley et al.(2016)
ERF4_col_a
0.683 0.620
ERF4
M06617_2.00
Arabidopsis thaliana
NHNNHNSCGCCGYCRHHDNN

NNHDDYGRCGGCGSNDNNDN
Dap-seq
OMalley et al.(2016)
ERF4_colamp_a
0.683 0.620
ERF109
M00849_2.00
Arabidopsis thaliana
NGCCGNHNN

NNDNCGGCN
PBM
Franco-Zorrilla et al.(2014)
RRTF1
0.683 0.680
ERF109
M06653_2.00
Arabidopsis thaliana
CKSCGCCGYHWHHNN

NNDDWDRCGGCGSMG
Dap-seq
OMalley et al.(2016)
RRTF1_col_a
0.683 0.680
ERF109
M06654_2.00
Arabidopsis thaliana
HNNHDSCGCCGYHWTHNNN

NNNDAWDRCGGCGSHDNND
Dap-seq
OMalley et al.(2016)
RRTF1_colamp_a
0.683 0.680
ERF104
M06682_2.00
Arabidopsis thaliana
NNHHDYMDCCGCCGCCRYH

DRYGGCGGCGGHKRHDDNN
Dap-seq
OMalley et al.(2016)
ERF104_col_a
0.682 0.600
ERF104
M06683_2.00
Arabidopsis thaliana
BHDSCGCCGCCRYHD

HDRYGGCGGCGSHDV
Dap-seq
OMalley et al.(2016)
ERF104_colamp_a
0.682 0.600
ERF9
M06670_2.00
Arabidopsis thaliana
YCDCCGCCGYCDHHDYHDYHN

NDRHDRHDDHGRCGGCGGHGR
Dap-seq
OMalley et al.(2016)
ERF9_col_a
0.681 0.660
ERF9
M06671_2.00
Arabidopsis thaliana
NNHDSCGCCGYCRHWDN

NHWDYGRCGGCGSHDNN
Dap-seq
OMalley et al.(2016)
ERF9_colamp_a
0.681 0.660
ERF095
M06624_2.00
Arabidopsis thaliana
YCDCCGCCGCCRYHD

HDRYGGCGGCGGHGR
Dap-seq
OMalley et al.(2016)
ESE1_col_a
0.680 0.660
ERF095
M06625_2.00
Arabidopsis thaliana
YHNYYDYHDCCGCCGCCDYH

DRHGGCGGCGGHDRHRRNDR
Dap-seq
OMalley et al.(2016)
ESE1_colamp_a
0.680 0.660
0100010458
M01644_2.00
Ostreococcus tauri
MGCCGSCR

YGSCGGCK
PBM
Weirauch et al.(2014)
pTH9447
0.677 0.640
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
mrna18922.1-v1.0-hybrid AP2 95 147

Links

Other AP2 family TFs
Other Fragaria vesca TFs

1596 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AGABI2DRAFT_189489 Agaricus bisporus AGABI2DRAFT_189489 N 0.000
AGABI2DRAFT_189491 Agaricus bisporus AGABI2DRAFT_189491 N 0.000
M378DRAFT_231637 Amanita muscaria M378DRAFT_231637 N 0.000
M378DRAFT_155191 Amanita muscaria M378DRAFT_155191 N 0.000
BOTBODRAFT_145891 Botryobasidium botryosum BOTBODRAFT_145891 N 0.000
CERSUDRAFT_58152 Ceriporiopsis subvermispora CERSUDRAFT_58152 N 0.000
CERSUDRAFT_118578 Ceriporiopsis subvermispora CERSUDRAFT_118578 N 0.000
CC1G_00475 Coprinopsis cinerea CC1G_00475 N 0.000
CC1G_00473 Coprinopsis cinerea CC1G_00473 N 0.000
DACRYDRAFT_23503 Dacryopinax sp DACRYDRAFT_23503 N 0.000
FIBRA_05929 Fibroporia radiculosa FIBRA_05929 N 0.000
FIBRA_05932 Fibroporia radiculosa FIBRA_05932 N 0.000
FOMPIDRAFT_1116252 Fomitopsis pinicola FOMPIDRAFT_1116252 N 0.000
FOMPIDRAFT_1116028 Fomitopsis pinicola FOMPIDRAFT_1116028 N 0.000
FOMPIDRAFT_1055174 Fomitopsis pinicola FOMPIDRAFT_1055174 N 0.000
GLOTRDRAFT_108831 Gloeophyllum trabeum GLOTRDRAFT_108831 N 0.000
GLOTRDRAFT_52076 Gloeophyllum trabeum GLOTRDRAFT_52076 N 0.000
M413DRAFT_203694 Hebeloma cylindrosporum M413DRAFT_203694 N 0.000
M413DRAFT_22216 Hebeloma cylindrosporum M413DRAFT_22216 N 0.000
e_gw1.1.2701.1 Heterobasidion annosum e_gw1.1.2701.1 N 0.000
estExt_fgenesh3_kg.C_10130 Heterobasidion annosum estExt_fgenesh3_kg.C_10130 N 0.000
HETIRDRAFT_42232 Heterobasidion irregulare HETIRDRAFT_42232 N 0.000
HETIRDRAFT_437588 Heterobasidion irregulare HETIRDRAFT_437588 N 0.000
JAAARDRAFT_119291 Jaapia argillacea JAAARDRAFT_119291 N 0.000
JAAARDRAFT_44071 Jaapia argillacea JAAARDRAFT_44071 N 0.000
K443DRAFT_87642 Laccaria amethystina K443DRAFT_87642 N 0.000
K443DRAFT_119713 Laccaria amethystina K443DRAFT_119713 N 0.000
LACBIDRAFT_301245 Laccaria bicolor LACBIDRAFT_301245 N 0.000
Moror_7184 Moniliophthora roreri Moror_7184 N 0.000
PAXRUDRAFT_128596 Paxillus rubicundulus PAXRUDRAFT_128596 N 0.000
PAXRUDRAFT_29391 Paxillus rubicundulus PAXRUDRAFT_29391 N 0.000
PHACADRAFT_248112 Phanerochaete carnosa PHACADRAFT_248112 N 0.000
PHACADRAFT_24671 Phanerochaete carnosa PHACADRAFT_24671 N 0.000
fgenesh1_pg.C_scaffold_13000199 Phanerochaete chrysosporium fgenesh1_pg.C_scaffold_13000199 N 0.000
fgenesh1_pg.C_scaffold_13000197 Phanerochaete chrysosporium fgenesh1_pg.C_scaffold_13000197 N 0.000
PHLGIDRAFT_21439 Phlebiopsis gigantea PHLGIDRAFT_21439 N 0.000
PHLGIDRAFT_63255 Phlebiopsis gigantea PHLGIDRAFT_63255 N 0.000
PILCRDRAFT_237018 Piloderma croceum PILCRDRAFT_237018 N 0.000
PIIN_02424 Piriformospora indica PIIN_02424 N 0.000
PISMIDRAFT_383922 Pisolithus microcarpus PISMIDRAFT_383922 N 0.000
PISMIDRAFT_634734 Pisolithus microcarpus PISMIDRAFT_634734 N 0.000
PISMIDRAFT_87408 Pisolithus microcarpus PISMIDRAFT_87408 N 0.000
M404DRAFT_137801 Pisolithus tinctorius M404DRAFT_137801 N 0.000
M404DRAFT_137526 Pisolithus tinctorius M404DRAFT_137526 N 0.000
PLEOSDRAFT_1063138 Pleurotus ostreatus PLEOSDRAFT_1063138 N 0.000
PLEOSDRAFT_1036936 Pleurotus ostreatus PLEOSDRAFT_1036936 N 0.000
POSPLDRAFT_105591 Postia placenta POSPLDRAFT_105591 N 0.000
V565_018480 Rhizoctonia solani V565_018480 N 0.000
SCHCODRAFT_84273 Schizophyllum commune SCHCODRAFT_84273 N 0.000
SCLCIDRAFT_1207436 Scleroderma citrinum SCLCIDRAFT_1207436 N 0.000
SCLCIDRAFT_506632 Scleroderma citrinum SCLCIDRAFT_506632 N 0.000
SERLA73DRAFT_172348 Serpula lacrymans SERLA73DRAFT_172348 N 0.000
SERLA73DRAFT_190105 Serpula lacrymans SERLA73DRAFT_190105 N 0.000
CY34DRAFT_21310 Suillus luteus CY34DRAFT_21310 N 0.000
CY34DRAFT_8831 Suillus luteus CY34DRAFT_8831 N 0.000
BN946_scf185007.g225 Trametes cinnabarina BN946_scf185007.g225 N 0.000
BN946_scf185007.g223 Trametes cinnabarina BN946_scf185007.g223 N 0.000
M407DRAFT_198423 Tulasnella calospora M407DRAFT_198423 N 0.000