Lus10041050.g (Linum usitatissimum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Lus10041050.g T008930_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ERF021
M06593_2.00
Arabidopsis thaliana
HNYCDYCDYCDYCRCCGHCD

HGDCGGYGRHGRHGRHGRND
Dap-seq
OMalley et al.(2016)
AT1G71450_col_a
0.747 0.820
ERF021
M06594_2.00
Arabidopsis thaliana
NHNNCRCCGHCDH

DHGDCGGYGNNDN
Dap-seq
OMalley et al.(2016)
AT1G71450_colamp_a
0.747 0.820
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10041050 AP2 11 62

Links

Other AP2 family TFs
Other Linum usitatissimum TFs

76 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
27805.m000021 Ricinus communis 27805.m000021 I 0.693
28118.m000034 Ricinus communis 28118.m000034 I 0.790
AMTR_s00099p00039760 Amborella trichopoda AMTR_s00099p00039760 I 0.698
ERF022 Arabidopsis thaliana AT1G33760 I 0.710
ERF021 Arabidopsis thaliana AT1G71450 D 0.747
Bo2g072910 Brassica oleracea Bo2g072910 I 0.747
Bo5g086680 Brassica oleracea Bo5g086680 I 0.690
Bo6g046850 Brassica oleracea Bo6g046850 I 0.712
Bo6g094210 Brassica oleracea Bo6g094210 I 0.713
Bo6g113020 Brassica oleracea Bo6g113020 I 0.745
Bo8g027240 Brassica oleracea Bo8g027240 I 0.715
Bostr.10273s0203 Boechera stricta Bostr.10273s0203 I 0.703
Bostr.3359s0006 Boechera stricta Bostr.3359s0006 I 0.712
Bra003924 Brassica rapa Bra003924 I 0.713
Bra007975 Brassica rapa Bra007975 I 0.747
Bra010210 Brassica rapa Bra010210 I 0.696
Bra016136 Brassica rapa Bra016136 I 0.744
Bra028009 Brassica rapa Bra028009 I 0.718
Cagra.2418s0001 Capsella grandiflora Cagra.2418s0001 I 0.747
Carubv10011715m.g Capsella rubella Carubv10011715m.g I 0.726
Carubv10012215m.g Capsella rubella Carubv10012215m.g I 0.721
Carubv10022349m.g Capsella rubella Carubv10022349m.g I 0.747
cassava43172.valid.m1 Manihot esculenta cassava43172.valid.m1 I 0.759
cassava8552.m1 Manihot esculenta cassava8552.m1 I 0.736
chr2.CM0018.470.nd Lotus japonicus chr2.CM0018.470.nd I 0.769
chr2.CM0018.610.nd Lotus japonicus chr2.CM0018.610.nd I 0.703
Ciclev10023857m.g Citrus clementina Ciclev10023857m.g I 0.758
Ciclev10024063m.g Citrus clementina Ciclev10024063m.g I 0.706
Cla012661 Citrullus lanatus Cla012661 I 0.690
Cla012665 Citrullus lanatus Cla012665 I 0.741
Cucsa.237150 Cucumis sativus Cucsa.237150 I 0.736
Cucsa.237170 Cucumis sativus Cucsa.237170 I 0.690
Eucgr.F02974 Eucalyptus grandis Eucgr.F02974 I 0.760
Eucgr.F02975 Eucalyptus grandis Eucgr.F02975 I 0.795
evm.TU.supercontig_21.69 Carica papaya evm.TU.supercontig_21.69 I 0.743
evm.TU.supercontig_21.70 Carica papaya evm.TU.supercontig_21.70 I 0.729
fgenesh2_kg.2__1406__AT1G71450.1 Arabidopsis lyrata fgenesh2_kg.2__1406__AT1G71450.1 I 0.747
gene27017-v1.0-hybrid Fragaria vesca gene27017-v1.0-hybrid I 0.705
gene27021-v1.0-hybrid Fragaria vesca gene27021-v1.0-hybrid I 0.751
GLYMA01G44130 Glycine max GLYMA01G44130 I 0.679
GLYMA01G44140 Glycine max GLYMA01G44140 I 0.769
GLYMA11G01640 Glycine max GLYMA11G01640 I 0.769
Gorai.005G116500 Gossypium raimondii Gorai.005G116500 I 0.741
Gorai.009G266600 Gossypium raimondii Gorai.009G266600 I 0.751
Gorai.009G266700 Gossypium raimondii Gorai.009G266700 I 0.721
Lus10002953.g Linum usitatissimum Lus10002953.g I 0.704
Lus10006173.g Linum usitatissimum Lus10006173.g I 0.832
Lus10041052.g Linum usitatissimum Lus10041052.g N 0.702
MDP0000122739 Malus domestica MDP0000122739 I 0.705
MDP0000122740 Malus domestica MDP0000122740 I 0.705
MDP0000151428 Malus domestica MDP0000151428 I 0.705
MDP0000283350 Malus domestica MDP0000283350 I 0.766
MTR_5g008590 Medicago truncatula MTR_5g008590 I 0.769
orange1.1g035756m.g Citrus sinensis orange1.1g035756m.g I 0.758
orange1.1g046901m.g Citrus sinensis orange1.1g046901m.g I 0.706
PGSC0003DMG400017813 Solanum tuberosum PGSC0003DMG400017813 I 0.718
PGSC0003DMG400018054 Solanum tuberosum PGSC0003DMG400018054 I 0.723
Pm004269 Prunus mume Pm004269 I 0.766
Pm004272 Prunus mume Pm004272 I 0.709
POPTR_0001s18180 Populus trichocarpa POPTR_0001s18180 I 0.736
POPTR_0013s10340 Populus trichocarpa POPTR_0013s10340 I 0.737
POPTR_0019s10420 Populus trichocarpa POPTR_0019s10420 I 0.741
PRUPE_ppa012354mg Prunus persica PRUPE_ppa012354mg I 0.766
PRUPE_ppa018178mg Prunus persica PRUPE_ppa018178mg I 0.709
SapurV1A.0551s0030 Salix purpurea SapurV1A.0551s0030 I 0.768
SapurV1A.1130s0100 Salix purpurea SapurV1A.1130s0100 I 0.743
SapurV1A.1331s0040 Salix purpurea SapurV1A.1331s0040 I 0.743
scaffold_103754.1 Arabidopsis lyrata scaffold_103754.1 I 0.708
Solyc11g042560.1 Solanum lycopersicum Solyc11g042560.1 I 0.694
Solyc11g042580.1 Solanum lycopersicum Solyc11g042580.1 I 0.731
TCM_036269 Theobroma cacao TCM_036269 I 0.732
TCM_036270 Theobroma cacao TCM_036270 I 0.715
Thhalv10010002m.g Eutrema salsugineum Thhalv10010002m.g I 0.709
Thhalv10019659m.g Eutrema salsugineum Thhalv10019659m.g I 0.744
VIT_18s0001g05850 Vitis vinifera VIT_18s0001g05850 I 0.710
VIT_18s0001g05890 Vitis vinifera VIT_18s0001g05890 I 0.726