orange1.1g046337m.g (Citrus sinensis)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 orange1.1g046337m.g T009308_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
RAP2-11
M06665_2.00
Arabidopsis thaliana
NNNYHDYYGCCGBCN

NGVCGGCRRHDRNNN
Dap-seq
OMalley et al.(2016)
RAP211_col_a
0.796 0.863
RAP2-11
M06666_2.00
Arabidopsis thaliana
HNNNGCCGGCSDNND

HNNHSGCCGGCNNND
Dap-seq
OMalley et al.(2016)
RAP211_colamp_a
0.796 0.863
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
orange1.1g046337m AP2 44 95

Links

Other AP2 family TFs
Other Citrus sinensis TFs

269 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
F775_02727 Aegilops tauschii F775_02727 I 0.823
F775_04303 Aegilops tauschii F775_04303 I 0.785
AMTR_s00003p00165930 Amborella trichopoda AMTR_s00003p00165930 I 0.688
AMTR_s00006p00266920 Amborella trichopoda AMTR_s00006p00266920 I 0.721
AMTR_s00058p00066390 Amborella trichopoda AMTR_s00058p00066390 I 0.785
AMTR_s00068p00102110 Amborella trichopoda AMTR_s00068p00102110 I 0.793
AMTR_s00069p00132820 Amborella trichopoda AMTR_s00069p00132820 I 0.745
Aquca_026_00181 Aquilegia coerulea Aquca_026_00181 I 0.718
Aquca_013_00424 Aquilegia coerulea Aquca_013_00424 I 0.699
Aquca_004_00669 Aquilegia coerulea Aquca_004_00669 I 0.792
Aquca_002_00706 Aquilegia coerulea Aquca_002_00706 I 0.815
RAP2.11 Arabidopsis lyrata scaffold_602074.1 I 0.796
RAP2-11 Arabidopsis thaliana AT5G19790 D 0.796
Bostr.26527s0221 Boechera stricta Bostr.26527s0221 I 0.796
BRADI1G23756 Brachypodium distachyon BRADI1G23756 I 0.693
BRADI1G54450 Brachypodium distachyon BRADI1G54450 I 0.745
Bo3g013830 Brassica oleracea Bo3g013830 I 0.796
Bo2g018360 Brassica oleracea Bo2g018360 I 0.796
Bo9g152440 Brassica oleracea Bo9g152440 I 0.796
Bra020063 Brassica rapa Bra020063 I 0.796
Bra006518 Brassica rapa Bra006518 I 0.796
Bra002262 Brassica rapa Bra002262 I 0.796
PK28640.1 Cannabis sativa PK28640.1 I 0.710
PK13330.1 Cannabis sativa PK13330.1 I 0.823
PK25269.1 Cannabis sativa PK25269.1 I 0.761
Cagra.1268s0022 Capsella grandiflora Cagra.1268s0022 I 0.796
Carubv10002733m.g Capsella rubella Carubv10002733m.g I 0.796
evm.TU.supercontig_51.136 Carica papaya evm.TU.supercontig_51.136 I 0.796
evm.TU.supercontig_14.126 Carica papaya evm.TU.supercontig_14.126 I 0.823
evm.TU.supercontig_18.194 Carica papaya evm.TU.supercontig_18.194 I 0.727
evm.TU.supercontig_62.63 Carica papaya evm.TU.supercontig_62.63 I 0.706
Ca_08232 Cicer arietinum Ca_08232 I 0.796
Ca_16397 Cicer arietinum Ca_16397 I 0.723
Ca_10494 Cicer arietinum Ca_10494 I 0.823
Ca_00417 Cicer arietinum Ca_00417 I 0.723
Ca_25424 Cicer arietinum Ca_25424 I 0.734
Cla021590 Citrullus lanatus Cla021590 I 0.750
Cla012318 Citrullus lanatus Cla012318 I 0.783
Cla005054 Citrullus lanatus Cla005054 N 0.684
Cla010474 Citrullus lanatus Cla010474 I 0.820
Ciclev10033847m.g Citrus clementina Ciclev10033847m.g I 0.822
Ciclev10024614m.g Citrus clementina Ciclev10024614m.g N 0.691
Ciclev10023764m.g Citrus clementina Ciclev10023764m.g I 0.744
Ciclev10023360m.g Citrus clementina Ciclev10023360m.g I 0.714
Ciclev10021611m.g Citrus clementina Ciclev10021611m.g I 0.783
Ciclev10013796m.g Citrus clementina Ciclev10013796m.g I 0.823
Ciclev10022187m.g Citrus clementina Ciclev10022187m.g N 0.694
orange1.1g016393m.g Citrus sinensis orange1.1g016393m.g I 0.714
orange1.1g046190m.g Citrus sinensis orange1.1g046190m.g I 0.822
orange1.1g042608m.g Citrus sinensis orange1.1g042608m.g N 0.694
orange1.1g037119m.g Citrus sinensis orange1.1g037119m.g I 0.744
orange1.1g043751m.g Citrus sinensis orange1.1g043751m.g I 0.783
orange1.1g023169m.g Citrus sinensis orange1.1g023169m.g I 0.783
Cucsa.193280 Cucumis sativus Cucsa.193280 N 0.684
Cucsa.158080 Cucumis sativus Cucsa.158080 I 0.820
Cucsa.258020 Cucumis sativus Cucsa.258020 I 0.750
Cucsa.334870 Cucumis sativus Cucsa.334870 I 0.783
Cucsa.152770 Cucumis sativus Cucsa.152770 I 0.732
Eucgr.I02007 Eucalyptus grandis Eucgr.I02007 I 0.806
Eucgr.B03605 Eucalyptus grandis Eucgr.B03605 I 0.808
Eucgr.B00666 Eucalyptus grandis Eucgr.B00666 I 0.695
Eucgr.A02109 Eucalyptus grandis Eucgr.A02109 I 0.788
Thhalv10015715m.g Eutrema salsugineum Thhalv10015715m.g I 0.796
gene16905-v1.0-hybrid Fragaria vesca gene16905-v1.0-hybrid I 0.744
gene16598-v1.0-hybrid Fragaria vesca gene16598-v1.0-hybrid I 0.793
gene04400-v1.0-hybrid Fragaria vesca gene04400-v1.0-hybrid I 0.823
gene01844-v1.0-hybrid Fragaria vesca gene01844-v1.0-hybrid N 0.682
gene24824-v1.0-hybrid Fragaria vesca gene24824-v1.0-hybrid I 0.781
GLYMA02G08020 Glycine max GLYMA02G08020 I 0.699
GLYMA19G29000 Glycine max GLYMA19G29000 I 0.796
GLYMA17G13320 Glycine max GLYMA17G13320 I 0.681
GLYMA16G27040 Glycine max GLYMA16G27040 I 0.699
GLYMA16G04410 Glycine max GLYMA16G04410 I 0.796
GLYMA15G09190 Glycine max GLYMA15G09190 N 0.677
GLYMA13G05690 Glycine max GLYMA13G05690 I 0.819
GLYMA07G08542 Glycine max GLYMA07G08542 I 0.723
GLYMA03G01931 Glycine max GLYMA03G01931 I 0.723
GLYMA05G07690 Glycine max GLYMA05G07690 I 0.681
GLYMA18G49761 Glycine max GLYMA18G49761 I 0.814
GLYMA19G03120 Glycine max GLYMA19G03120 I 0.823
GLYMA19G03165 Glycine max GLYMA19G03165 I 0.823
Gorai.013G115000 Gossypium raimondii Gorai.013G115000 I 0.749
Gorai.008G261800 Gossypium raimondii Gorai.008G261800 I 0.714
Gorai.007G260900 Gossypium raimondii Gorai.007G260900 I 0.733
Gorai.006G013600 Gossypium raimondii Gorai.006G013600 I 0.823
Gorai.004G127900 Gossypium raimondii Gorai.004G127900 N 0.681
Gorai.008G116800 Gossypium raimondii Gorai.008G116800 I 0.744
Gorai.008G178900 Gossypium raimondii Gorai.008G178900 I 0.786
Gorai.013G244500 Gossypium raimondii Gorai.013G244500 I 0.796
MLOC_18783 Hordeum vulgare MLOC_18783 I 0.745
MLOC_69002 Hordeum vulgare MLOC_69002 I 0.687
MLOC_7255 Hordeum vulgare MLOC_7255 I 0.823
LPERR07G17030 Leersia perrieri LPERR07G17030 I 0.704
LPERR12G14340 Leersia perrieri LPERR12G14340 I 0.787
LPERR07G05890 Leersia perrieri LPERR07G05890 I 0.796
LPERR09G12960 Leersia perrieri LPERR09G12960 I 0.737
Lus10001298.g Linum usitatissimum Lus10001298.g I 0.820
Lus10013764.g Linum usitatissimum Lus10013764.g I 0.734
Lus10041372.g Linum usitatissimum Lus10041372.g I 0.743
Lus10013614.g Linum usitatissimum Lus10013614.g I 0.738
Lus10039171.g Linum usitatissimum Lus10039171.g I 0.736
Lus10037137.g Linum usitatissimum Lus10037137.g I 0.818
Lus10036793.g Linum usitatissimum Lus10036793.g I 0.818
Lus10036556.g Linum usitatissimum Lus10036556.g I 0.744
Lus10010652.g Linum usitatissimum Lus10010652.g I 0.783
Lus10012703.g Linum usitatissimum Lus10012703.g I 0.820
Lus10030430.g Linum usitatissimum Lus10030430.g I 0.800
chr1.CM0371.120.nc Lotus japonicus chr1.CM0371.120.nc I 0.796
LjT06B04.30.nd Lotus japonicus LjT06B04.30.nd N 0.677
MDP0000197375 Malus domestica MDP0000197375 I 0.727
MDP0000551969 Malus domestica MDP0000551969 I 0.823
MDP0000525933 Malus domestica MDP0000525933 I 0.745
MDP0000276536 Malus domestica MDP0000276536 I 0.823
MDP0000177547 Malus domestica MDP0000177547 I 0.796
MDP0000157628 Malus domestica MDP0000157628 I 0.727
MDP0000127123 Malus domestica MDP0000127123 N 0.683
MDP0000128326 Malus domestica MDP0000128326 I 0.746
MDP0000133476 Malus domestica MDP0000133476 I 0.744
MDP0000138669 Malus domestica MDP0000138669 I 0.744
cassava4189.m1 Manihot esculenta cassava4189.m1 I 0.822
cassava9303.m1 Manihot esculenta cassava9303.m1 I 0.747
cassava4119.m1 Manihot esculenta cassava4119.m1 I 0.735
cassava9290.m1 Manihot esculenta cassava9290.m1 I 0.809
cassava23953.valid.m1 Manihot esculenta cassava23953.valid.m1 I 0.789
cassava28630.m1 Manihot esculenta cassava28630.m1 I 0.727
cassava40212.m1 Manihot esculenta cassava40212.m1 I 0.744
cassava4942.m1 Manihot esculenta cassava4942.m1 I 0.819
cassava9887.m1 Manihot esculenta cassava9887.m1 I 0.714
cassava1773.valid.m1 Manihot esculenta cassava1773.valid.m1 I 0.820
MTR_4g082345 Medicago truncatula MTR_4g082345 I 0.728
MTR_6g012970 Medicago truncatula MTR_6g012970 I 0.823
MTR_7g011630 Medicago truncatula MTR_7g011630 I 0.815
MTR_6g029180 Medicago truncatula MTR_6g029180 I 0.715
MTR_2g016730 Medicago truncatula MTR_2g016730 N 0.693
MTR_7g085810 Medicago truncatula MTR_7g085810 I 0.796
MTR_8g032610 Medicago truncatula MTR_8g032610 I 0.723
mgf023693m Mimulus guttatus mgf023693m I 0.772
mgf022665m Mimulus guttatus mgf022665m I 0.793
mgf018851m Mimulus guttatus mgf018851m I 0.744
mgf022810m Mimulus guttatus mgf022810m I 0.772
GSMUA_Achr3G12350_001 Musa acuminata GSMUA_Achr3G12350_001 I 0.728
GSMUA_Achr4G28640_001 Musa acuminata GSMUA_Achr4G28640_001 I 0.796
GSMUA_Achr4G28070_001 Musa acuminata GSMUA_Achr4G28070_001 I 0.823
OBART12G17080 Oryza barthii OBART12G17080 I 0.823
OBART07G19610 Oryza barthii OBART07G19610 I 0.687
OBART07G06690 Oryza barthii OBART07G06690 I 0.796
OB09G23520 Oryza brachyantha OB09G23520 I 0.746
OB07G15030 Oryza brachyantha OB07G15030 I 0.796
ORGLA07G0057000 Oryza glaberrima ORGLA07G0057000 I 0.796
ORGLA07G0253000 Oryza glaberrima ORGLA07G0253000 I 0.687
ORGLA12G0200400 Oryza glaberrima ORGLA12G0200400 I 0.823
OGLUM07G06400 Oryza glumaepatula OGLUM07G06400 I 0.796
OGLUM07G19400 Oryza glumaepatula OGLUM07G19400 I 0.687
OGLUM09G17450 Oryza glumaepatula OGLUM09G17450 I 0.737
OGLUM12G18720 Oryza glumaepatula OGLUM12G18720 I 0.823
BGIOSGA024035 Oryza indica BGIOSGA024035 I 0.687
BGIOSGA025360 Oryza indica BGIOSGA025360 I 0.796
BGIOSGA031114 Oryza indica BGIOSGA031114 I 0.748
BGIOSGA037681 Oryza indica BGIOSGA037681 I 0.823
OLONG_022569 Oryza longistaminata OLONG_022569 I 0.796
OMERI11G15200 Oryza meridionalis OMERI11G15200 I 0.823
OMERI09G12500 Oryza meridionalis OMERI09G12500 I 0.750
OMERI07G16350 Oryza meridionalis OMERI07G16350 I 0.687
ONIVA12G15550 Oryza nivara ONIVA12G15550 I 0.823
ONIVA09G17920 Oryza nivara ONIVA09G17920 I 0.748
ONIVA07G17970 Oryza nivara ONIVA07G17970 I 0.687
ONIVA01G29960 Oryza nivara ONIVA01G29960 I 0.796
OPUNC09G15300 Oryza punctata OPUNC09G15300 I 0.750
OPUNC12G15550 Oryza punctata OPUNC12G15550 I 0.823
OPUNC07G18550 Oryza punctata OPUNC07G18550 I 0.687
OPUNC07G06390 Oryza punctata OPUNC07G06390 I 0.791
ORUFI12G19000 Oryza rufipogon ORUFI12G19000 I 0.823
ORUFI09G18220 Oryza rufipogon ORUFI09G18220 I 0.750
ORUFI07G06610 Oryza rufipogon ORUFI07G06610 I 0.796
ORUFI07G20430 Oryza rufipogon ORUFI07G20430 I 0.687
OS07G0204000 Oryza sativa OS07G0204000 I 0.796
OS07G0575000 Oryza sativa OS07G0575000 I 0.687
OS12G0582900 Oryza sativa OS12G0582900 I 0.823
Pavir.Ia01300 Panicum virgatum Pavir.Ia01300 I 0.820
Pavir.Cb00448 Panicum virgatum Pavir.Cb00448 I 0.820
Pavir.J19478 Panicum virgatum Pavir.J19478 I 0.683
Pavir.J28151 Panicum virgatum Pavir.J28151 I 0.820
Pavir.Ba03636 Panicum virgatum Pavir.Ba03636 I 0.798
Pavir.Ba01277 Panicum virgatum Pavir.Ba01277 I 0.745
Pavir.Ba00533 Panicum virgatum Pavir.Ba00533 I 0.683
Pavir.Ib03934 Panicum virgatum Pavir.Ib03934 I 0.820
Pavir.J28133 Panicum virgatum Pavir.J28133 I 0.820
Pavir.Bb00676 Panicum virgatum Pavir.Bb00676 I 0.793
e_gw1.64.98.1 Physcomitrella patens e_gw1.64.98.1 I 0.689
e_gw1.233.44.1 Physcomitrella patens e_gw1.233.44.1 I 0.689
e_gw1.195.59.1 Physcomitrella patens e_gw1.195.59.1 N 0.682
POPTR_0001s45740 Populus trichocarpa POPTR_0001s45740 N 0.681
POPTR_0003s21090 Populus trichocarpa POPTR_0003s21090 I 0.796
POPTR_0008s09080 Populus trichocarpa POPTR_0008s09080 I 0.814
POPTR_0010s17110 Populus trichocarpa POPTR_0010s17110 I 0.768
POPTR_0013s05330 Populus trichocarpa POPTR_0013s05330 I 0.700
POPTR_0014s07280 Populus trichocarpa POPTR_0014s07280 I 0.744
POPTR_0019s05170 Populus trichocarpa POPTR_0019s05170 I 0.694
POPTR_0001s04190 Populus trichocarpa POPTR_0001s04190 I 0.796
POPTR_0017s12370 Populus trichocarpa POPTR_0017s12370 I 0.823
Pm008788 Prunus mume Pm008788 I 0.744
Pm000004 Prunus mume Pm000004 I 0.745
Pm015931 Prunus mume Pm015931 I 0.823
Pm025326 Prunus mume Pm025326 I 0.796
Pm030235 Prunus mume Pm030235 I 0.727
PRUPE_ppa019500mg Prunus persica PRUPE_ppa019500mg N 0.681
PRUPE_ppa018710mg Prunus persica PRUPE_ppa018710mg I 0.727
PRUPE_ppa025010mg Prunus persica PRUPE_ppa025010mg I 0.823
PRUPE_ppa022202mg Prunus persica PRUPE_ppa022202mg I 0.744
PRUPE_ppa025828mg Prunus persica PRUPE_ppa025828mg I 0.745
PRUPE_ppa016109mg Prunus persica PRUPE_ppa016109mg I 0.796
30084.m000185 Ricinus communis 30084.m000185 I 0.796
30174.m008961 Ricinus communis 30174.m008961 I 0.740
30174.m009031 Ricinus communis 30174.m009031 I 0.735
30068.m002623 Ricinus communis 30068.m002623 I 0.703
29813.m001543 Ricinus communis 29813.m001543 I 0.822
29635.m000461 Ricinus communis 29635.m000461 I 0.823
SapurV1A.0081s0430 Salix purpurea SapurV1A.0081s0430 I 0.770
SapurV1A.2432s0010 Salix purpurea SapurV1A.2432s0010 I 0.744
SapurV1A.0322s0110 Salix purpurea SapurV1A.0322s0110 I 0.823
SapurV1A.0598s0020 Salix purpurea SapurV1A.0598s0020 I 0.694
SapurV1A.0918s0170 Salix purpurea SapurV1A.0918s0170 I 0.796
SapurV1A.1886s0020 Salix purpurea SapurV1A.1886s0020 I 0.805
SELMODRAFT_73140 Selaginella moellendorffii SELMODRAFT_73140 I 0.760
SELMODRAFT_411255 Selaginella moellendorffii SELMODRAFT_411255 N 0.683
SELMODRAFT_409196 Selaginella moellendorffii SELMODRAFT_409196 N 0.683
SELMODRAFT_73145 Selaginella moellendorffii SELMODRAFT_73145 I 0.760
Si030686m.g Setaria italica Si030686m.g I 0.683
Si027288m.g Setaria italica Si027288m.g I 0.705
Si024417m.g Setaria italica Si024417m.g I 0.820
Si032213m.g Setaria italica Si032213m.g I 0.745
Si033237m.g Setaria italica Si033237m.g I 0.799
Si038848m.g Setaria italica Si038848m.g I 0.823
Solyc01g005630.1 Solanum lycopersicum Solyc01g005630.1 I 0.765
Solyc03g114440.1 Solanum lycopersicum Solyc03g114440.1 N 0.695
Solyc01g091760.2 Solanum lycopersicum Solyc01g091760.2 I 0.728
Solyc02g067020.1 Solanum lycopersicum Solyc02g067020.1 I 0.809
Solyc03g119800.1 Solanum lycopersicum Solyc03g119800.1 N 0.681
Solyc10g080650.1 Solanum lycopersicum Solyc10g080650.1 I 0.720
PGSC0003DMG400001343 Solanum tuberosum PGSC0003DMG400001343 I 0.823
PGSC0003DMG400023701 Solanum tuberosum PGSC0003DMG400023701 I 0.720
PGSC0003DMG400025151 Solanum tuberosum PGSC0003DMG400025151 I 0.814
PGSC0003DMG400024606 Solanum tuberosum PGSC0003DMG400024606 I 0.697
PGSC0003DMG400005621 Solanum tuberosum PGSC0003DMG400005621 N 0.681
PGSC0003DMG400017051 Solanum tuberosum PGSC0003DMG400017051 I 0.728
Sb08g019530 Sorghum bicolor Sb08g019530 I 0.823
Sb01g014810 Sorghum bicolor Sb01g014810 I 0.820
Sb02g006023 Sorghum bicolor Sb02g006023 I 0.799
Sb02g030350 Sorghum bicolor Sb02g030350 I 0.739
TCM_025913 Theobroma cacao TCM_025913 I 0.796
TCM_014471 Theobroma cacao TCM_014471 I 0.724
TCM_040015 Theobroma cacao TCM_040015 I 0.796
TCM_018659 Theobroma cacao TCM_018659 I 0.823
TCM_015579 Theobroma cacao TCM_015579 I 0.714
TCM_005425 Theobroma cacao TCM_005425 I 0.744
TCM_011632 Theobroma cacao TCM_011632 I 0.786
Traes_2BS_B1A73C7A8 Triticum aestivum Traes_2BS_B1A73C7A8 I 0.687
Traes_5DS_1BDB9837E Triticum aestivum Traes_5DS_1BDB9837E I 0.823
VIT_17s0000g04480 Vitis vinifera VIT_17s0000g04480 I 0.708
RAP2.11 Vitis vinifera VIT_08s0007g07250 I 0.796
VIT_06s0004g00490 Vitis vinifera VIT_06s0004g00490 I 0.762
VIT_02s0025g03170 Vitis vinifera VIT_02s0025g03170 N 0.679
VIT_14s0108g01220 Vitis vinifera VIT_14s0108g01220 I 0.823
GRMZM2G010100 Zea mays GRMZM2G010100 I 0.820
GRMZM2G384386 Zea mays GRMZM2G384386 I 0.685
GRMZM2G039112 Zea mays GRMZM2G039112 I 0.823
GRMZM2G019443 Zea mays GRMZM2G019443 I 0.730
GRMZM2G018138 Zea mays GRMZM2G018138 I 0.739
GRMZM2G011236 Zea mays GRMZM2G011236 I 0.686