Pavir.J28133 (Panicum virgatum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Pavir.J28133 T009620_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
RAP2-11
M06665_2.00
Arabidopsis thaliana
NNNYHDYYGCCGBCN

NGVCGGCRRHDRNNN
Dap-seq
OMalley et al.(2016)
RAP211_col_a
0.799 0.882
RAP2-11
M06666_2.00
Arabidopsis thaliana
HNNNGCCGGCSDNND

HNNHSGCCGGCNNND
Dap-seq
OMalley et al.(2016)
RAP211_colamp_a
0.799 0.882
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J28133.1.p AP2 51 102

Links

Other AP2 family TFs
Other Panicum virgatum TFs

269 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
F775_02727 Aegilops tauschii F775_02727 I 0.820
F775_04303 Aegilops tauschii F775_04303 I 0.782
AMTR_s00003p00165930 Amborella trichopoda AMTR_s00003p00165930 I 0.688
AMTR_s00006p00266920 Amborella trichopoda AMTR_s00006p00266920 I 0.722
AMTR_s00058p00066390 Amborella trichopoda AMTR_s00058p00066390 I 0.782
AMTR_s00068p00102110 Amborella trichopoda AMTR_s00068p00102110 I 0.794
AMTR_s00069p00132820 Amborella trichopoda AMTR_s00069p00132820 I 0.746
Aquca_013_00424 Aquilegia coerulea Aquca_013_00424 I 0.700
Aquca_004_00669 Aquilegia coerulea Aquca_004_00669 I 0.795
Aquca_026_00181 Aquilegia coerulea Aquca_026_00181 I 0.719
Aquca_002_00706 Aquilegia coerulea Aquca_002_00706 I 0.818
RAP2.11 Arabidopsis lyrata scaffold_602074.1 I 0.799
RAP2-11 Arabidopsis thaliana AT5G19790 D 0.799
Bostr.26527s0221 Boechera stricta Bostr.26527s0221 I 0.799
BRADI1G54450 Brachypodium distachyon BRADI1G54450 I 0.748
BRADI1G23756 Brachypodium distachyon BRADI1G23756 I 0.690
Bo9g152440 Brassica oleracea Bo9g152440 I 0.799
Bo3g013830 Brassica oleracea Bo3g013830 I 0.799
Bo2g018360 Brassica oleracea Bo2g018360 I 0.799
Bra020063 Brassica rapa Bra020063 I 0.799
Bra006518 Brassica rapa Bra006518 I 0.799
Bra002262 Brassica rapa Bra002262 I 0.799
PK13330.1 Cannabis sativa PK13330.1 I 0.820
PK28640.1 Cannabis sativa PK28640.1 I 0.710
PK25269.1 Cannabis sativa PK25269.1 I 0.758
Cagra.1268s0022 Capsella grandiflora Cagra.1268s0022 I 0.799
Carubv10002733m.g Capsella rubella Carubv10002733m.g I 0.799
evm.TU.supercontig_18.194 Carica papaya evm.TU.supercontig_18.194 I 0.728
evm.TU.supercontig_14.126 Carica papaya evm.TU.supercontig_14.126 I 0.820
evm.TU.supercontig_62.63 Carica papaya evm.TU.supercontig_62.63 I 0.706
evm.TU.supercontig_51.136 Carica papaya evm.TU.supercontig_51.136 I 0.799
Ca_16397 Cicer arietinum Ca_16397 I 0.724
Ca_00417 Cicer arietinum Ca_00417 I 0.720
Ca_08232 Cicer arietinum Ca_08232 I 0.799
Ca_25424 Cicer arietinum Ca_25424 I 0.730
Ca_10494 Cicer arietinum Ca_10494 I 0.820
Cla012318 Citrullus lanatus Cla012318 I 0.786
Cla010474 Citrullus lanatus Cla010474 I 0.823
Cla005054 Citrullus lanatus Cla005054 N 0.687
Cla021590 Citrullus lanatus Cla021590 I 0.751
Ciclev10033847m.g Citrus clementina Ciclev10033847m.g I 0.819
Ciclev10023764m.g Citrus clementina Ciclev10023764m.g I 0.745
Ciclev10022187m.g Citrus clementina Ciclev10022187m.g N 0.694
Ciclev10024614m.g Citrus clementina Ciclev10024614m.g N 0.691
Ciclev10021611m.g Citrus clementina Ciclev10021611m.g I 0.786
Ciclev10013796m.g Citrus clementina Ciclev10013796m.g I 0.820
Ciclev10023360m.g Citrus clementina Ciclev10023360m.g I 0.711
orange1.1g046190m.g Citrus sinensis orange1.1g046190m.g I 0.819
orange1.1g046337m.g Citrus sinensis orange1.1g046337m.g I 0.820
orange1.1g037119m.g Citrus sinensis orange1.1g037119m.g I 0.745
orange1.1g042608m.g Citrus sinensis orange1.1g042608m.g N 0.694
orange1.1g016393m.g Citrus sinensis orange1.1g016393m.g I 0.711
orange1.1g043751m.g Citrus sinensis orange1.1g043751m.g I 0.786
orange1.1g023169m.g Citrus sinensis orange1.1g023169m.g I 0.786
Cucsa.158080 Cucumis sativus Cucsa.158080 I 0.823
Cucsa.193280 Cucumis sativus Cucsa.193280 N 0.687
Cucsa.334870 Cucumis sativus Cucsa.334870 I 0.786
Cucsa.258020 Cucumis sativus Cucsa.258020 I 0.751
Cucsa.152770 Cucumis sativus Cucsa.152770 I 0.735
Eucgr.I02007 Eucalyptus grandis Eucgr.I02007 I 0.803
Eucgr.B03605 Eucalyptus grandis Eucgr.B03605 I 0.808
Eucgr.B00666 Eucalyptus grandis Eucgr.B00666 I 0.695
Eucgr.A02109 Eucalyptus grandis Eucgr.A02109 I 0.791
Thhalv10015715m.g Eutrema salsugineum Thhalv10015715m.g I 0.799
gene24824-v1.0-hybrid Fragaria vesca gene24824-v1.0-hybrid I 0.785
gene16905-v1.0-hybrid Fragaria vesca gene16905-v1.0-hybrid I 0.745
gene16598-v1.0-hybrid Fragaria vesca gene16598-v1.0-hybrid I 0.796
gene04400-v1.0-hybrid Fragaria vesca gene04400-v1.0-hybrid I 0.820
gene01844-v1.0-hybrid Fragaria vesca gene01844-v1.0-hybrid N 0.682
GLYMA02G08020 Glycine max GLYMA02G08020 I 0.702
GLYMA19G29000 Glycine max GLYMA19G29000 I 0.799
GLYMA03G01931 Glycine max GLYMA03G01931 I 0.724
GLYMA05G07690 Glycine max GLYMA05G07690 I 0.681
GLYMA07G08542 Glycine max GLYMA07G08542 I 0.724
GLYMA13G05690 Glycine max GLYMA13G05690 I 0.820
GLYMA16G04410 Glycine max GLYMA16G04410 I 0.799
GLYMA16G27040 Glycine max GLYMA16G27040 I 0.702
GLYMA17G13320 Glycine max GLYMA17G13320 I 0.681
GLYMA18G49761 Glycine max GLYMA18G49761 I 0.811
GLYMA19G03120 Glycine max GLYMA19G03120 I 0.820
GLYMA19G03165 Glycine max GLYMA19G03165 I 0.820
Gorai.013G115000 Gossypium raimondii Gorai.013G115000 I 0.752
Gorai.008G261800 Gossypium raimondii Gorai.008G261800 I 0.711
Gorai.008G178900 Gossypium raimondii Gorai.008G178900 I 0.782
Gorai.008G116800 Gossypium raimondii Gorai.008G116800 I 0.745
Gorai.007G260900 Gossypium raimondii Gorai.007G260900 I 0.736
Gorai.006G013600 Gossypium raimondii Gorai.006G013600 I 0.820
Gorai.004G127900 Gossypium raimondii Gorai.004G127900 N 0.678
Gorai.013G244500 Gossypium raimondii Gorai.013G244500 I 0.799
MLOC_18783 Hordeum vulgare MLOC_18783 I 0.748
MLOC_69002 Hordeum vulgare MLOC_69002 I 0.684
MLOC_7255 Hordeum vulgare MLOC_7255 I 0.820
LPERR07G05890 Leersia perrieri LPERR07G05890 I 0.799
LPERR07G17030 Leersia perrieri LPERR07G17030 I 0.701
LPERR09G12960 Leersia perrieri LPERR09G12960 I 0.734
LPERR12G14340 Leersia perrieri LPERR12G14340 I 0.790
Lus10012703.g Linum usitatissimum Lus10012703.g I 0.823
Lus10001298.g Linum usitatissimum Lus10001298.g I 0.823
Lus10037137.g Linum usitatissimum Lus10037137.g I 0.815
Lus10041372.g Linum usitatissimum Lus10041372.g I 0.745
Lus10036793.g Linum usitatissimum Lus10036793.g I 0.815
Lus10036556.g Linum usitatissimum Lus10036556.g I 0.745
Lus10030430.g Linum usitatissimum Lus10030430.g I 0.797
Lus10013764.g Linum usitatissimum Lus10013764.g I 0.737
Lus10013614.g Linum usitatissimum Lus10013614.g I 0.741
Lus10010652.g Linum usitatissimum Lus10010652.g I 0.786
Lus10008291.g Linum usitatissimum Lus10008291.g N 0.677
Lus10039171.g Linum usitatissimum Lus10039171.g I 0.739
LjSGA_026378.1 Lotus japonicus LjSGA_026378.1 N 0.677
chr1.CM0371.120.nc Lotus japonicus chr1.CM0371.120.nc I 0.799
MDP0000133476 Malus domestica MDP0000133476 I 0.745
MDP0000157628 Malus domestica MDP0000157628 I 0.727
MDP0000551969 Malus domestica MDP0000551969 I 0.820
MDP0000127123 Malus domestica MDP0000127123 N 0.683
MDP0000525933 Malus domestica MDP0000525933 I 0.748
MDP0000276536 Malus domestica MDP0000276536 I 0.820
MDP0000197375 Malus domestica MDP0000197375 I 0.727
MDP0000177547 Malus domestica MDP0000177547 I 0.799
MDP0000128326 Malus domestica MDP0000128326 I 0.749
MDP0000138669 Malus domestica MDP0000138669 I 0.745
cassava40212.m1 Manihot esculenta cassava40212.m1 I 0.745
cassava4942.m1 Manihot esculenta cassava4942.m1 I 0.816
cassava4119.m1 Manihot esculenta cassava4119.m1 I 0.735
cassava9290.m1 Manihot esculenta cassava9290.m1 I 0.812
cassava23953.valid.m1 Manihot esculenta cassava23953.valid.m1 I 0.793
cassava28630.m1 Manihot esculenta cassava28630.m1 I 0.728
cassava4189.m1 Manihot esculenta cassava4189.m1 I 0.819
cassava9303.m1 Manihot esculenta cassava9303.m1 I 0.747
cassava47343.m1 Manihot esculenta cassava47343.m1 N 0.677
cassava9887.m1 Manihot esculenta cassava9887.m1 I 0.717
cassava1773.valid.m1 Manihot esculenta cassava1773.valid.m1 I 0.823
MTR_4g082345 Medicago truncatula MTR_4g082345 I 0.728
MTR_6g029180 Medicago truncatula MTR_6g029180 I 0.718
MTR_7g085810 Medicago truncatula MTR_7g085810 I 0.799
MTR_7g011630 Medicago truncatula MTR_7g011630 I 0.818
MTR_2g016730 Medicago truncatula MTR_2g016730 N 0.690
MTR_8g032610 Medicago truncatula MTR_8g032610 I 0.724
MTR_6g012970 Medicago truncatula MTR_6g012970 I 0.820
mgf022810m Mimulus guttatus mgf022810m I 0.775
mgf023693m Mimulus guttatus mgf023693m I 0.775
mgf018851m Mimulus guttatus mgf018851m I 0.745
mgf022665m Mimulus guttatus mgf022665m I 0.796
GSMUA_Achr3G12350_001 Musa acuminata GSMUA_Achr3G12350_001 I 0.729
GSMUA_Achr4G28640_001 Musa acuminata GSMUA_Achr4G28640_001 I 0.799
GSMUA_Achr4G28070_001 Musa acuminata GSMUA_Achr4G28070_001 I 0.820
OBART12G17080 Oryza barthii OBART12G17080 I 0.820
OBART07G19610 Oryza barthii OBART07G19610 I 0.684
OBART07G06690 Oryza barthii OBART07G06690 I 0.799
OB09G23520 Oryza brachyantha OB09G23520 I 0.746
OB07G15030 Oryza brachyantha OB07G15030 I 0.799
ORGLA07G0057000 Oryza glaberrima ORGLA07G0057000 I 0.799
ORGLA07G0253000 Oryza glaberrima ORGLA07G0253000 I 0.684
ORGLA12G0200400 Oryza glaberrima ORGLA12G0200400 I 0.820
OGLUM12G18720 Oryza glumaepatula OGLUM12G18720 I 0.820
OGLUM09G17450 Oryza glumaepatula OGLUM09G17450 I 0.734
OGLUM07G19400 Oryza glumaepatula OGLUM07G19400 I 0.684
OGLUM07G06400 Oryza glumaepatula OGLUM07G06400 I 0.799
BGIOSGA024035 Oryza indica BGIOSGA024035 I 0.684
BGIOSGA031114 Oryza indica BGIOSGA031114 I 0.750
BGIOSGA037681 Oryza indica BGIOSGA037681 I 0.820
BGIOSGA025360 Oryza indica BGIOSGA025360 I 0.799
OLONG_022569 Oryza longistaminata OLONG_022569 I 0.799
OMERI09G12500 Oryza meridionalis OMERI09G12500 I 0.751
OMERI07G16350 Oryza meridionalis OMERI07G16350 I 0.684
OMERI11G15200 Oryza meridionalis OMERI11G15200 I 0.820
ONIVA12G15550 Oryza nivara ONIVA12G15550 I 0.820
ONIVA09G17920 Oryza nivara ONIVA09G17920 I 0.750
ONIVA07G17970 Oryza nivara ONIVA07G17970 I 0.684
ONIVA01G29960 Oryza nivara ONIVA01G29960 I 0.799
OPUNC07G18550 Oryza punctata OPUNC07G18550 I 0.684
OPUNC12G15550 Oryza punctata OPUNC12G15550 I 0.820
OPUNC09G15300 Oryza punctata OPUNC09G15300 I 0.751
OPUNC07G06390 Oryza punctata OPUNC07G06390 I 0.794
ORUFI07G06610 Oryza rufipogon ORUFI07G06610 I 0.799
ORUFI07G20430 Oryza rufipogon ORUFI07G20430 I 0.684
ORUFI09G18220 Oryza rufipogon ORUFI09G18220 I 0.751
ORUFI12G19000 Oryza rufipogon ORUFI12G19000 I 0.820
OS07G0204000 Oryza sativa OS07G0204000 I 0.799
OS12G0582900 Oryza sativa OS12G0582900 I 0.820
OS07G0575000 Oryza sativa OS07G0575000 I 0.684
Pavir.Bb00676 Panicum virgatum Pavir.Bb00676 I 0.790
Pavir.Ba03636 Panicum virgatum Pavir.Ba03636 I 0.795
Pavir.J19478 Panicum virgatum Pavir.J19478 I 0.686
Pavir.Ba01277 Panicum virgatum Pavir.Ba01277 I 0.746
Pavir.Ba00533 Panicum virgatum Pavir.Ba00533 I 0.686
Pavir.Ib03934 Panicum virgatum Pavir.Ib03934 I 0.823
Pavir.Cb00448 Panicum virgatum Pavir.Cb00448 I 0.823
Pavir.Ia01300 Panicum virgatum Pavir.Ia01300 I 0.823
Pavir.J28151 Panicum virgatum Pavir.J28151 I 0.823
e_gw1.64.98.1 Physcomitrella patens e_gw1.64.98.1 I 0.689
e_gw1.233.44.1 Physcomitrella patens e_gw1.233.44.1 I 0.689
e_gw1.195.59.1 Physcomitrella patens e_gw1.195.59.1 N 0.682
POPTR_0014s07280 Populus trichocarpa POPTR_0014s07280 I 0.745
POPTR_0001s45740 Populus trichocarpa POPTR_0001s45740 N 0.678
POPTR_0003s21090 Populus trichocarpa POPTR_0003s21090 I 0.799
POPTR_0008s09080 Populus trichocarpa POPTR_0008s09080 I 0.811
POPTR_0010s17110 Populus trichocarpa POPTR_0010s17110 I 0.765
POPTR_0013s05330 Populus trichocarpa POPTR_0013s05330 I 0.704
POPTR_0019s05170 Populus trichocarpa POPTR_0019s05170 I 0.697
POPTR_0001s04190 Populus trichocarpa POPTR_0001s04190 I 0.799
POPTR_0017s12370 Populus trichocarpa POPTR_0017s12370 I 0.820
Pm025326 Prunus mume Pm025326 I 0.799
Pm015931 Prunus mume Pm015931 I 0.820
Pm030235 Prunus mume Pm030235 I 0.727
Pm008788 Prunus mume Pm008788 I 0.745
Pm000004 Prunus mume Pm000004 I 0.748
PRUPE_ppa022202mg Prunus persica PRUPE_ppa022202mg I 0.745
PRUPE_ppa016109mg Prunus persica PRUPE_ppa016109mg I 0.799
PRUPE_ppa025828mg Prunus persica PRUPE_ppa025828mg I 0.748
PRUPE_ppa025010mg Prunus persica PRUPE_ppa025010mg I 0.820
PRUPE_ppa018710mg Prunus persica PRUPE_ppa018710mg I 0.727
PRUPE_ppa019500mg Prunus persica PRUPE_ppa019500mg N 0.678
30174.m009031 Ricinus communis 30174.m009031 I 0.735
29813.m001543 Ricinus communis 29813.m001543 I 0.819
30068.m002623 Ricinus communis 30068.m002623 I 0.705
30084.m000185 Ricinus communis 30084.m000185 I 0.799
30174.m008961 Ricinus communis 30174.m008961 I 0.741
29635.m000461 Ricinus communis 29635.m000461 I 0.820
SapurV1A.0081s0430 Salix purpurea SapurV1A.0081s0430 I 0.773
SapurV1A.0322s0110 Salix purpurea SapurV1A.0322s0110 I 0.820
SapurV1A.0598s0020 Salix purpurea SapurV1A.0598s0020 I 0.697
SapurV1A.0918s0170 Salix purpurea SapurV1A.0918s0170 I 0.799
SapurV1A.2432s0010 Salix purpurea SapurV1A.2432s0010 I 0.745
SapurV1A.1886s0020 Salix purpurea SapurV1A.1886s0020 I 0.808
SELMODRAFT_73140 Selaginella moellendorffii SELMODRAFT_73140 I 0.761
SELMODRAFT_411255 Selaginella moellendorffii SELMODRAFT_411255 N 0.680
SELMODRAFT_409196 Selaginella moellendorffii SELMODRAFT_409196 N 0.680
SELMODRAFT_73145 Selaginella moellendorffii SELMODRAFT_73145 I 0.761
Si030686m.g Setaria italica Si030686m.g I 0.686
Si027288m.g Setaria italica Si027288m.g I 0.706
Si024417m.g Setaria italica Si024417m.g I 0.823
Si032213m.g Setaria italica Si032213m.g I 0.746
Si033237m.g Setaria italica Si033237m.g I 0.796
Si038848m.g Setaria italica Si038848m.g I 0.820
Solyc01g005630.1 Solanum lycopersicum Solyc01g005630.1 I 0.768
Solyc02g067020.1 Solanum lycopersicum Solyc02g067020.1 I 0.809
Solyc01g091760.2 Solanum lycopersicum Solyc01g091760.2 I 0.729
Solyc03g114440.1 Solanum lycopersicum Solyc03g114440.1 N 0.696
Solyc03g119800.1 Solanum lycopersicum Solyc03g119800.1 N 0.678
Solyc10g080650.1 Solanum lycopersicum Solyc10g080650.1 I 0.723
PGSC0003DMG400001343 Solanum tuberosum PGSC0003DMG400001343 I 0.820
PGSC0003DMG400025151 Solanum tuberosum PGSC0003DMG400025151 I 0.811
PGSC0003DMG400024606 Solanum tuberosum PGSC0003DMG400024606 I 0.697
PGSC0003DMG400023701 Solanum tuberosum PGSC0003DMG400023701 I 0.723
PGSC0003DMG400017051 Solanum tuberosum PGSC0003DMG400017051 I 0.729
PGSC0003DMG400005621 Solanum tuberosum PGSC0003DMG400005621 N 0.678
Sb01g014810 Sorghum bicolor Sb01g014810 I 0.823
Sb02g006023 Sorghum bicolor Sb02g006023 I 0.796
Sb02g030350 Sorghum bicolor Sb02g030350 I 0.740
Sb08g019530 Sorghum bicolor Sb08g019530 I 0.820
TCM_018659 Theobroma cacao TCM_018659 I 0.820
TCM_025913 Theobroma cacao TCM_025913 I 0.799
TCM_040015 Theobroma cacao TCM_040015 I 0.799
TCM_011632 Theobroma cacao TCM_011632 I 0.782
TCM_015579 Theobroma cacao TCM_015579 I 0.711
TCM_014471 Theobroma cacao TCM_014471 I 0.724
TCM_005425 Theobroma cacao TCM_005425 I 0.745
Traes_2BS_B1A73C7A8 Triticum aestivum Traes_2BS_B1A73C7A8 I 0.684
Traes_5DS_1BDB9837E Triticum aestivum Traes_5DS_1BDB9837E I 0.820
VIT_17s0000g04480 Vitis vinifera VIT_17s0000g04480 I 0.708
RAP2.11 Vitis vinifera VIT_08s0007g07250 I 0.799
VIT_06s0004g00490 Vitis vinifera VIT_06s0004g00490 I 0.765
VIT_14s0108g01220 Vitis vinifera VIT_14s0108g01220 I 0.820
GRMZM2G011236 Zea mays GRMZM2G011236 I 0.689
GRMZM2G384386 Zea mays GRMZM2G384386 I 0.686
GRMZM2G039112 Zea mays GRMZM2G039112 I 0.820
GRMZM2G019443 Zea mays GRMZM2G019443 I 0.727
GRMZM2G018138 Zea mays GRMZM2G018138 I 0.740
GRMZM2G010100 Zea mays GRMZM2G010100 I 0.823