Pavir.J32835 (Panicum virgatum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Pavir.J32835 T009635_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ERF2
M01631_2.00
Arabidopsis thaliana
NNNGCCGNCN

NGNCGGCNNN
PBM
Weirauch et al.(2014)
pTH8113
0.769 0.755
ERF2
M06672_2.00
Arabidopsis thaliana
HHNHHNYHDYCGCCGCCRYND

HNRYGGCGGCGRHDRNDDNDD
Dap-seq
OMalley et al.(2016)
ERF2_col_a
0.769 0.755
ERF2
M06673_2.00
Arabidopsis thaliana
NNNNNNNHNNHDSMGCCGCCR

YGGCGGCKSHDNNDNNNNNNN
Dap-seq
OMalley et al.(2016)
ERF2_colamp_a
0.769 0.755
ERF1A
M00848_2.00
Arabidopsis thaliana
NNNNRNN

NNYNNNN
PBM
Franco-Zorrilla et al.(2014)
ATERF1
0.756 0.755
ERF1A
M00720_2.00
Arabidopsis thaliana
NMGCCRNCN

NGNYGGCKN
PBM
Chang et al.(2013)
pTH7202
0.756 0.755
Q7Y1W2_TOBAC
M09735_2.00
Nicotiana tabacum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$CEF1_01
0.741 0.816
RAP2-12
M01046_2.00
Arabidopsis thaliana
RSMGBMNNNN

NNNNKVCKSY
PBM
Sullivan et al.(2014)
pTH7359
0.736 0.776
RAP2-12
M06588_2.00
Arabidopsis thaliana
NHDCCGCCGCCRHHDHNNNHN

NDNNNDHDDYGGCGGCGGHDN
Dap-seq
OMalley et al.(2016)
RAP212_col_a
0.736 0.776
A4F249_TOBAC
M09726_2.00
Nicotiana tabacum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$WRAF2_01
0.726 0.735
A4F248_TOBAC
M09725_2.00
Nicotiana tabacum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$WRAF1_01
0.723 0.735
RAP2-2
M00719_2.00
Arabidopsis thaliana
NNRBYGNN

NNCRVYNN
PBM
Chang et al.(2013)
pTH7227
0.718 0.735
EREBP1
M09708_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$EREBP1_01
0.717 0.796
ERF2_TOBAC
M09727_2.00
Nicotiana tabacum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ERF2_01
0.715 0.714
HRE1
M06595_2.00
Arabidopsis thaliana
NHNBMDCCGCCGCCRYHDHHN

NDDHDRYGGCGGCGGHKVNDN
Dap-seq
OMalley et al.(2016)
ERF73_col_a
0.710 0.776
HRE1
M06596_2.00
Arabidopsis thaliana
HNYHDMHNYCDCCGCCGCCRY

RYGGCGGCGGHGRNDKHDRND
Dap-seq
OMalley et al.(2016)
ERF73_colamp_a
0.710 0.776
ERF109
M00849_2.00
Arabidopsis thaliana
NGCCGNHNN

NNDNCGGCN
PBM
Franco-Zorrilla et al.(2014)
RRTF1
0.700 0.714
ERF109
M06653_2.00
Arabidopsis thaliana
CKSCGCCGYHWHHNN

NNDDWDRCGGCGSMG
Dap-seq
OMalley et al.(2016)
RRTF1_col_a
0.700 0.714
ERF109
M06654_2.00
Arabidopsis thaliana
HNNHDSCGCCGYHWTHNNN

NNNDAWDRCGGCGSHDNND
Dap-seq
OMalley et al.(2016)
RRTF1_colamp_a
0.700 0.714
ERF5
M00721_2.00
Arabidopsis thaliana
NNNGSMRNMN

NKNYKSCNNN
PBM
Chang et al.(2013)
pTH7197
0.699 0.735
ERF5
M06674_2.00
Arabidopsis thaliana
YCDYCKCCGCCGYCD

HGRCGGCGGMGRHGR
Dap-seq
OMalley et al.(2016)
ERF5_col_a
0.699 0.735
ERF5
M06675_2.00
Arabidopsis thaliana
NHDBCGCCGCCRYHDNHDNNN

NNNHDNHDRYGGCGGCGVHDN
Dap-seq
OMalley et al.(2016)
ERF5_colamp_a
0.699 0.735
ERF9
M06670_2.00
Arabidopsis thaliana
YCDCCGCCGYCDHHDYHDYHN

NDRHDRHDDHGRCGGCGGHGR
Dap-seq
OMalley et al.(2016)
ERF9_col_a
0.699 0.735
ERF9
M06671_2.00
Arabidopsis thaliana
NNHDSCGCCGYCRHWDN

NHWDYGRCGGCGSHDNN
Dap-seq
OMalley et al.(2016)
ERF9_colamp_a
0.699 0.735
ERF5_TOBAC
M09729_2.00
Nicotiana tabacum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ERF4_02
0.698 0.714
Q2TN80_WHEAT
M09715_2.00
Triticum aestivum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ERF1_02
0.696 0.796
ERF095
M06624_2.00
Arabidopsis thaliana
YCDCCGCCGCCRYHD

HDRYGGCGGCGGHGR
Dap-seq
OMalley et al.(2016)
ESE1_col_a
0.691 0.694
ERF095
M06625_2.00
Arabidopsis thaliana
YHNYYDYHDCCGCCGCCDYH

DRHGGCGGCGGHDRHRRNDR
Dap-seq
OMalley et al.(2016)
ESE1_colamp_a
0.691 0.694
ERF7
M01617_2.00
Arabidopsis thaliana
NGCCGNMNNN

NNNKNCGGCN
PBM
Weirauch et al.(2014)
pTH7606
0.689 0.653
ERF7
M06620_2.00
Arabidopsis thaliana
YHNHYNYYDYCDCCGCCGYCD

HGRCGGCGGHGRHRRNRDNDR
Dap-seq
OMalley et al.(2016)
ERF7_col_a
0.689 0.653
ERF7
M06621_2.00
Arabidopsis thaliana
NNNHNNHNHHDSCGCCGCCRH

DYGGCGGCGSHDDNDNNDNNN
Dap-seq
OMalley et al.(2016)
ERF7_colamp_a
0.689 0.653
ERF106
M01628_2.00
Arabidopsis thaliana
NNNVCRVCN

NGBYGBNNN
PBM
Weirauch et al.(2014)
pTH7426
0.687 0.653
ERF6
M01621_2.00
Arabidopsis thaliana
NNGCCGGCVN

NBGCCGGCNN
PBM
Weirauch et al.(2014)
pTH7228
0.687 0.776
ERF6
M06637_2.00
Arabidopsis thaliana
NHNHHDCCGCCGCCRYHDHHN

NDDHDRYGGCGGCGGHDDNDN
Dap-seq
OMalley et al.(2016)
ERF6_col
0.687 0.776
PK02330.1
M01095_2.00
Cannabis sativa
NNNGCCGBCN

NGVCGGCNNN
PBM
Lambert et al.(2019)
pTH10093
0.687 0.694
0100010458
M01644_2.00
Ostreococcus tauri
MGCCGSCR

YGSCGGCK
PBM
Weirauch et al.(2014)
pTH9447
0.683 0.673
A5JTT1_WHEAT
M09700_2.00
Triticum aestivum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ERF3_01
0.682 0.714
O65242_TOBAC
M09730_2.00
Nicotiana tabacum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$TSI1_01
0.682 0.653
ERF4_TOBAC
M09728_2.00
Nicotiana tabacum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ERF3_02
0.682 0.653
ERF113
M01629_2.00
Arabidopsis thaliana
NNGCCGHHNN

NNDDCGGCNN
PBM
Weirauch et al.(2014)
pTH8097
0.680 0.694
PK19363.1
M01100_2.00
Cannabis sativa
NMGCCGHMNN

NNKDCGGCKN
PBM
Lambert et al.(2019)
pTH10138
0.680 0.653
PK19363.1
M01643_2.00
Cannabis sativa
CGCCGYCD

HGRCGGCG
PBM
Weirauch et al.(2014)
pTH9609
0.680 0.653
ERF14
M01045_2.00
Arabidopsis thaliana
NVGCCGNCN

NGNCGGCBN
PBM
Sullivan et al.(2014)
pTH9793
0.679 0.673
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J32835.1.p AP2 87 138

Links

Other AP2 family TFs
Other Panicum virgatum TFs

984 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AAEL013408 Aedes aegypti AAEL013408 I 0.000
AALB004583 Anopheles albimanus AALB004583 I 0.000
Aan_R010721 Calypte anna Aan_R010721 I 0.000
AARA003510 Anopheles arabiensis AARA003510 I 0.000
AATE015987 Anopheles atroparvus AATE015987 I 0.000
ACEP13992 Atta cephalotes ACEP13992 I 0.000
ACHR007416 Anopheles christyi ACHR007416 I 0.000
ACOM036369 Anopheles coluzzii ACOM036369 I 0.000
ACUA011008 Anopheles culicifacies ACUA011008 I 0.000
ADAC006957 Anopheles darlingi ADAC006957 I 0.000
ADIR001685 Anopheles dirus ADIR001685 I 0.000
AEPI005273 Anopheles epiroticus AEPI005273 I 0.000
AFAF013455 Anopheles farauti AFAF013455 I 0.000
Afo_R011879 Aptenodytes forsteri Afo_R011879 I 0.000
AFUN005053 Anopheles funestus AFUN005053 I 0.000
AGAP004905 Anopheles gambiae AGAP004905 I 0.000
Alligator_sinensis_CCG021031.1 Alligator sinensis Alligator_sinensis_CCG021031.1 I 0.000
AMAM018568 Anopheles maculatus AMAM018568 I 0.000
AMEC000569 Anopheles melas AMEC000569 I 0.000
AMEM010249 Anopheles merus AMEM010249 I 0.000
AMIN011402 Anopheles minimus AMIN011402 I 0.000
AQUA000322 Anopheles quadriannulatus AQUA000322 I 0.000
ASIS014192 Anopheles sinensis ASIS014192 I 0.000
ASTEI10643 Anopheles stephensi ASTEI10643 I 0.000
BGIBMGA002019 Bombyx mori BGIBMGA002019 I 0.000
BGLB009094 Biomphalaria glabrata BGLB009094 I 0.000
Brh_R009745 Buceros rhinoceros Brh_R009745 I 0.000
CapteG228571 Capitella teleta CapteG228571 I 0.000
Cflo_07037--XP_395757.2_APIME Camponotus floridanus Cflo_07037--XP_395757.2_APIME I 0.000
CGI_10012910 Crassostrea gigas CGI_10012910 I 0.000
Cmyd_10004045 Chelonia mydas Cmyd_10004045 I 0.000
CPIJ007045 Culex quinquefasciatus CPIJ007045 I 0.000
CpipJ_CPIJ007045 Culex pipiens CpipJ_CPIJ007045 I 0.000
DEAF1 Anolis carolinensis ENSACAG00000015102 I 0.000
ENSAMEG00000010672 Ailuropoda melanoleuca ENSAMEG00000010672 I 0.000
ENSAMXG00000016516 Astyanax mexicanus ENSAMXG00000016516 I 0.000
ENSAPLG00000011215 Anas platyrhynchos ENSAPLG00000011215 I 0.000
DEAF1 Callithrix jacchus ENSCJAG00000011996 I 0.000
DEAF1 Cavia porcellus ENSCPOG00000006073 I 0.000
ENSCSAG00000010763 Chlorocebus sabaeus ENSCSAG00000010763 I 0.000
deaf1 Danio rerio ENSDARG00000088844 I 0.000
DEAF1 Dasypus novemcinctus ENSDNOG00000000274 I 0.000
Deaf1 Dipodomys ordii ENSDORG00000015737 I 0.000
DEAF1 Equus caballus ENSECAG00000010151 I 0.000
ENSFALG00000010923 Ficedula albicollis ENSFALG00000010923 I 0.000
DEAF1 Felis catus ENSFCAG00000007591 I 0.000
DEAF1 Homo sapiens ENSG00000177030 I 0.000
deaf1 Gasterosteus aculeatus ENSGACG00000008942 I 0.000
ENSGALG00000005089 Gallus gallus ENSGALG00000005089 I 0.000
DEAF1 Gorilla gorilla ENSGGOG00000014020 I 0.000
ENSGMOG00000000222 Gadus morhua ENSGMOG00000000222 I 0.000
ENSLACG00000014207 Latimeria chalumnae ENSLACG00000014207 I 0.000
DEAF1 Loxodonta africana ENSLAFG00000023242 I 0.000
ENSLOCG00000002360 Lepisosteus oculatus ENSLOCG00000002360 I 0.000
ENSMEUG00000005016 Macropus eugenii ENSMEUG00000005016 I 0.000
DEAF1 Meleagris gallopavo ENSMGAG00000003765 I 0.000
DEAF1 Microcebus murinus ENSMICG00000001602 I 0.000
DEAF1 Myotis lucifugus ENSMLUG00000026576 I 0.000
DEAF1 Macaca mulatta ENSMMUG00000002660 I 0.000
ENSMPUG00000008992 Mustela putorius furo ENSMPUG00000008992 I 0.000
Deaf1 Mus musculus ENSMUSG00000058886 I 0.000
ENSNLEG00000008479 Nomascus leucogenys ENSNLEG00000008479 I 0.000
ENSOARG00000006285 Ovis aries ENSOARG00000006285 I 0.000
DEAF1 Otolemur garnettii ENSOGAG00000006434 I 0.000
ENSONIG00000003936 Oreochromis niloticus ENSONIG00000003936 I 0.000
ENSOPRG00000002240 Ochotona princeps ENSOPRG00000002240 I 0.000
deaf1 Oryzias latipes ENSORLG00000019407 I 0.000
ENSP00000371846 Macaca fascicularis ENSP00000371846 I 0.000
ENSP00000371846-D1 Bos grunniens ENSP00000371846-D1 I 0.000
ENSPANG00000008597 Papio anubis ENSPANG00000008597 I 0.000
ENSPFOG00000014257 Poecilia formosa ENSPFOG00000014257 I 0.000
ENSPMAG00000004264 Petromyzon marinus ENSPMAG00000004264 I 0.000
ENSPSIG00000016545 Pelodiscus sinensis ENSPSIG00000016545 I 0.000
DEAF1 Pan troglodytes ENSPTRG00000003129 D 0.000
DEAF1 Pteropus vampyrus ENSPVAG00000006883 I 0.000
Deaf1 Rattus norvegicus ENSRNOG00000017960 I 0.000
ENSSHAG00000002042 Sarcophilus harrisii ENSSHAG00000002042 I 0.000
DEAF1 Sus scrofa ENSSSCG00000012850 I 0.000
ENSSTOG00000004165 Ictidomys tridecemlineatus ENSSTOG00000004165 I 0.000
ENSTBEG00000010230 Tupaia belangeri ENSTBEG00000010230 I 0.000
DEAF1 Taeniopygia guttata ENSTGUG00000007185 I 0.000
deaf1 Tetraodon nigroviridis ENSTNIG00000016068 I 0.000
deaf1 Takifugu rubripes ENSTRUG00000002931 I 0.000
DEAF1 Tursiops truncatus ENSTTRG00000015418 I 0.000
ENSXMAG00000013352 Xiphophorus maculatus ENSXMAG00000013352 I 0.000
fgenesh2_pg.scaffold_59000067 Branchiostoma floridae fgenesh2_pg.scaffold_59000067 I 0.000
fgenesh2_pg.scaffold_59000072 Branchiostoma floridae fgenesh2_pg.scaffold_59000072 I 0.000
GB41654 Apis mellifera GB41654 I 0.000
Gfo_R011899 Geospiza fortis Gfo_R011899 I 0.000
HHAL006904-PA Halyomorpha halys HHAL006904-PA I 0.000
HMEL013517 Heliconius melpomene HMEL013517 I 0.000
Hsal_03559--XP_395757.2_APIME Harpegnathos saltator Hsal_03559--XP_395757.2_APIME I 0.000
ISCW003915 Ixodes scapularis ISCW003915 I 0.000
KGM_18605 Danaus plexippus KGM_18605 I 0.000
L798_01684 Zootermopsis nevadensis L798_01684 I 0.000
LDEC013410 Leptinotarsa decemlineata LDEC013410 I 0.000
LotgiG168359 Lottia gigantea LotgiG168359 I 0.000
MCINX013640 Melitaea cinxia MCINX013640 I 0.000
Myotis_brandtii_DEAF1_10008461 Myotis brandtii Myotis_brandtii_DEAF1_10008461 I 0.000
NV18168 Nasonia vitripennis NV18168 I 0.000
Ocbimv22013386m.g Octopus bimaculoides Ocbimv22013386m.g I 0.000
Ogr05554 Ophisaurus gracilis Ogr05554 I 0.000
PHUM581340 Pediculus humanus PHUM581340 I 0.000
Pvit_08245 Pogona vitticeps Pvit_08245 I 0.000
RPRC001228 Rhodnius prolixus RPRC001228 I 0.000
Sakowv30032927m.g Saccoglossus kowalevskii Sakowv30032927m.g I 0.000
SINV20880 Solenopsis invicta SINV20880 I 0.000
SMAR003119 Strigamia maritima SMAR003119 I 0.000
SPU_014381 Strongylocentrotus purpuratus SPU_014381 N 0.000
TC000085 Tribolium castaneum TC000085 I 0.000
deaf1 Xenopus tropicalis XB-GENE-1216227 I 0.000
YQE_06816 Dendroctonus ponderosae YQE_06816 I 0.000