CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Thhalv10026328m.g
(
Eutrema salsugineum
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00847 (AP2)
IPR001471
Thhalv10026328m.g
T009994_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ERF015
M06649_2.00
Arabidopsis thaliana
YCACCGHCANHDNHNNNNNN
NNNNNNDNHDNTGDCGGTGR
Dap-seq
OMalley et al.(2016)
At4g31060_col_a
0.767
0.980
ERF015
M06650_2.00
Arabidopsis thaliana
HDYCACCGACANHNN
NNDNTGTCGGTGRHD
Dap-seq
OMalley et al.(2016)
At4g31060_colamp_a
0.767
0.980
For this family, TFs with SR scores >
0.677
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Thhalv10026328m
AP2
25
76
KCYRGVRKRAWGKWVSEIRVPRTGRRIWLGSYDAPEKAARAYDAALFCIRGE
Links
Other
AP2
family TFs
Other
Eutrema salsugineum
TFs
9 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy