CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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LjSGA_003590.1.1
(
Lotus japonicus
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00847 (AP2)
IPR001471
LjSGA_003590.1.1
T010259_2.00
Superfamily (2010-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
WIN1
M01603_2.00
Arabidopsis thaliana
VCRCCGCNNN
NNNGCGGYGB
PBM
Weirauch et al.(2014)
pTH7566
0.720
0.826
For this family, TFs with SR scores >
0.677
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
LjSGA_003590.1.1
AP2
5
51
KKFGGVRQCHWGSWVSEIRHLHLKRRLWLGTFETAEEAARAYDQAAI
Links
Other
AP2
family TFs
Other
Lotus japonicus
TFs
123 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Ciclev10009447m.g
Citrus clementina
Ciclev10009447m.g
I
0.757
Eucgr.C01178
Eucalyptus grandis
Eucgr.C01178
I
0.757
GLYMA17G12330
Glycine max
GLYMA17G12330
I
0.757
Gorai.009G017500
Gossypium raimondii
Gorai.009G017500
I
0.757
LjSGA_040388.1
Lotus japonicus
LjSGA_040388.1
I
0.757
chr4.LjT07P17.60.nc
Lotus japonicus
chr4.LjT07P17.60.nc
I
0.757
28320.m001139
Ricinus communis
28320.m001139
I
0.757
cassava24223.valid.m1
Manihot esculenta
cassava24223.valid.m1
I
0.757
MTR_4g114570
Medicago truncatula
MTR_4g114570
I
0.757
cassava34153.m1
Manihot esculenta
cassava34153.m1
I
0.757
GLYMA13G23570
Glycine max
GLYMA13G23570
I
0.757
Gorai.001G042300
Gossypium raimondii
Gorai.001G042300
I
0.757
orange1.1g027896m.g
Citrus sinensis
orange1.1g027896m.g
I
0.757
TCM_038081
Theobroma cacao
TCM_038081
I
0.757
POPTR_0018s13130
Populus trichocarpa
POPTR_0018s13130
I
0.757
Lus10030097.g
Linum usitatissimum
Lus10030097.g
I
0.757
Ca_06673
Cicer arietinum
Ca_06673
I
0.757
SapurV1A.0034s0630
Salix purpurea
SapurV1A.0034s0630
I
0.757
Lus10005716.g
Linum usitatissimum
Lus10005716.g
I
0.757
GLYMA04G19650
Glycine max
GLYMA04G19650
I
0.756
GLYMA06G29110
Glycine max
GLYMA06G29110
I
0.756
Cucsa.132120
Cucumis sativus
Cucsa.132120
I
0.754
VIT_11s0016g05340
Vitis vinifera
VIT_11s0016g05340
I
0.754
Cla016967
Citrullus lanatus
Cla016967
I
0.754
29841.m002846
Ricinus communis
29841.m002846
I
0.754
Traes_7DL_E1D7A51C8
Triticum aestivum
Traes_7DL_E1D7A51C8
I
0.751
TCM_027157
Theobroma cacao
TCM_027157
I
0.751
OLONG_016936
Oryza longistaminata
OLONG_016936
I
0.751
OMERI06G20980
Oryza meridionalis
OMERI06G20980
I
0.751
OPUNC06G18570
Oryza punctata
OPUNC06G18570
I
0.751
OS06G0604000
Oryza sativa
OS06G0604000
I
0.751
Ca_13435
Cicer arietinum
Ca_13435
I
0.751
OGLUM06G21440
Oryza glumaepatula
OGLUM06G21440
I
0.751
ORUFI06G21790
Oryza rufipogon
ORUFI06G21790
I
0.751
ORGLA06G0167900
Oryza glaberrima
ORGLA06G0167900
I
0.751
LjT09F21.30.nc
Lotus japonicus
LjT09F21.30.nc
I
0.751
ONIVA06G24150
Oryza nivara
ONIVA06G24150
I
0.751
MTR_4g010640
Medicago truncatula
MTR_4g010640
I
0.751
mgf005189m
Mimulus guttatus
mgf005189m
I
0.751
Ciclev10027305m.g
Citrus clementina
Ciclev10027305m.g
I
0.751
evm.TU.supercontig_10.254
Carica papaya
evm.TU.supercontig_10.254
I
0.751
BRADI1G36590
Brachypodium distachyon
BRADI1G36590
I
0.751
BGIOSGA020923
Oryza indica
BGIOSGA020923
I
0.751
LPERR06G17010
Leersia perrieri
LPERR06G17010
I
0.751
OB06G28040
Oryza brachyantha
OB06G28040
I
0.751
OBART06G20370
Oryza barthii
OBART06G20370
I
0.751
AMTR_s00025p00249140
Amborella trichopoda
AMTR_s00025p00249140
I
0.751
MLOC_59305
Hordeum vulgare
MLOC_59305
I
0.751
MDP0000873258
Malus domestica
MDP0000873258
I
0.751
PRUPE_ppa024826mg
Prunus persica
PRUPE_ppa024826mg
I
0.750
GLYMA08G22590
Glycine max
GLYMA08G22590
I
0.750
Cla012435
Citrullus lanatus
Cla012435
I
0.750
Cucsa.292670
Cucumis sativus
Cucsa.292670
I
0.750
Traes_6DS_E6A0BE6CD
Triticum aestivum
Traes_6DS_E6A0BE6CD
I
0.748
Traes_6AS_8E7166D79
Triticum aestivum
Traes_6AS_8E7166D79
I
0.748
Pavir.Db01224
Panicum virgatum
Pavir.Db01224
I
0.748
Pavir.Da00422
Panicum virgatum
Pavir.Da00422
I
0.748
Pavir.Aa02977
Panicum virgatum
Pavir.Aa02977
I
0.748
TRIUR3_22374
Triticum urartu
TRIUR3_22374
I
0.748
Pavir.Ab00737
Panicum virgatum
Pavir.Ab00737
I
0.748
Pm027542
Prunus mume
Pm027542
I
0.748
Sb10g023600
Sorghum bicolor
Sb10g023600
I
0.748
ONIVA02G09300
Oryza nivara
ONIVA02G09300
I
0.748
OLONG_004398
Oryza longistaminata
OLONG_004398
I
0.748
OPUNC02G06960
Oryza punctata
OPUNC02G06960
I
0.748
ORGLA02G0073000
Oryza glaberrima
ORGLA02G0073000
I
0.748
GSMUA_Achr10G27000_001
Musa acuminata
GSMUA_Achr10G27000_001
I
0.748
OGLUM02G07820
Oryza glumaepatula
OGLUM02G07820
I
0.748
OBART02G07740
Oryza barthii
OBART02G07740
I
0.748
GSMUA_Achr7G10160_001
Musa acuminata
GSMUA_Achr7G10160_001
I
0.748
LPERR02G06710
Leersia perrieri
LPERR02G06710
I
0.748
MLOC_12747
Hordeum vulgare
MLOC_12747
I
0.748
OB02G17060
Oryza brachyantha
OB02G17060
I
0.748
OS02G0202000
Oryza sativa
OS02G0202000
I
0.748
ORUFI03G26280
Oryza rufipogon
ORUFI03G26280
I
0.748
GRMZM2G085678
Zea mays
GRMZM2G085678
I
0.748
Sb04g006970
Sorghum bicolor
Sb04g006970
I
0.748
BRADI3G07450
Brachypodium distachyon
BRADI3G07450
I
0.748
Si008394m.g
Setaria italica
Si008394m.g
I
0.748
PRUPE_ppa010601mg
Prunus persica
PRUPE_ppa010601mg
I
0.748
F775_28212
Aegilops tauschii
F775_28212
I
0.748
BGIOSGA007748
Oryza indica
BGIOSGA007748
I
0.748
MTR_2g103700
Medicago truncatula
MTR_2g103700
I
0.747
Lus10009480.g
Linum usitatissimum
Lus10009480.g
I
0.747
Ca_02880
Cicer arietinum
Ca_02880
I
0.747
GSMUA_Achr9G28540_001
Musa acuminata
GSMUA_Achr9G28540_001
I
0.744
MDP0000430870
Malus domestica
MDP0000430870
I
0.744
MDP0000172065
Malus domestica
MDP0000172065
I
0.744
Eucgr.C04221
Eucalyptus grandis
Eucgr.C04221
I
0.744
Aquca_006_00004
Aquilegia coerulea
Aquca_006_00004
I
0.741
PGSC0003DMG400002889
Solanum tuberosum
PGSC0003DMG400002889
I
0.741
SHN1
Populus trichocarpa
POPTR_0003s02750
I
0.741
Solyc12g009490.1
Solanum lycopersicum
Solyc12g009490.1
I
0.741
SapurV1A.1759s0040
Salix purpurea
SapurV1A.1759s0040
I
0.738
cassava11389.m1
Manihot esculenta
cassava11389.m1
I
0.738
GRMZM2G106591
Zea mays
GRMZM2G106591
I
0.738
SapurV1A.0199s0350
Salix purpurea
SapurV1A.0199s0350
I
0.738
MDP0000124316
Malus domestica
MDP0000124316
I
0.725
MDP0000290880
Malus domestica
MDP0000290880
I
0.725
GLYMA15G01140
Glycine max
GLYMA15G01140
I
0.724
Bra016663
Brassica rapa
Bra016663
I
0.720
Bra026140
Brassica rapa
Bra026140
I
0.720
Bo8g066410
Brassica oleracea
Bo8g066410
I
0.720
WIN1
Arabidopsis thaliana
AT1G15360
D
0.720
Solyc03g116610.2
Solanum lycopersicum
Solyc03g116610.2
I
0.720
Thhalv10008845m.g
Eutrema salsugineum
Thhalv10008845m.g
I
0.720
Bo8g106100
Brassica oleracea
Bo8g106100
I
0.720
SHN1
Vitis vinifera
VIT_09s0002g06750
I
0.720
Carubv10010317m.g
Capsella rubella
Carubv10010317m.g
I
0.720
Cagra.2238s0086
Capsella grandiflora
Cagra.2238s0086
I
0.720
GSMUA_Achr6G05210_001
Musa acuminata
GSMUA_Achr6G05210_001
I
0.720
PGSC0003DMG400000636
Solanum tuberosum
PGSC0003DMG400000636
I
0.720
Bostr.7128s0149
Boechera stricta
Bostr.7128s0149
I
0.720
SHN1
Arabidopsis lyrata
fgenesh2_kg.1__1687__AT1G15360.1
I
0.720
GSMUA_Achr5G22840_001
Musa acuminata
GSMUA_Achr5G22840_001
I
0.693
Traes_7BL_EB1DCAB4B
Triticum aestivum
Traes_7BL_EB1DCAB4B
I
0.689
Thhalv10015363m.g
Eutrema salsugineum
Thhalv10015363m.g
I
0.683
Solyc03g117130.2
Solanum lycopersicum
Solyc03g117130.2
I
0.679
Cla006213
Citrullus lanatus
Cla006213
I
0.678
Cla012931
Citrullus lanatus
Cla012931
I
0.678
Cucsa.096220
Cucumis sativus
Cucsa.096220
I
0.678
PK28394.1
Cannabis sativa
PK28394.1
I
0.678
Lus10016815.g
Linum usitatissimum
Lus10016815.g
I
0.678