CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Arid3b
(
Mus musculus
)
ARID/BRIGHT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF01388 (ARID)
IPR001606
ENSMUSG00000004661
T014641_2.00
Ensembl (2018-Dec-8)
Link out
NCBI Gene Info:
Predicted to enable DNA binding activity. Involved in positive regulation of transcription by RNA polymerase II. Predicted to be located in nucleoplasm. Predicted to be active in nucleus. Is expressed in several structures, including central nervous system; early conceptus; genitourinary system; limb; and sensory organ. Orthologous to human ARID3B (AT-rich interaction domain 3B). [provided by Alliance of Genome Resources, Apr 2022]
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Arid3b
M01659_2.00
Mus musculus
NNDATTAAWWN
NWWTTAATHNN
PBM
Weirauch et al.(2014)
pTH4425
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ARID3A
M01658_2.00
Microcebus murinus
NDATHAWDN
NHWTDATHN
PBM
Weirauch et al.(2014)
pTH9214
0.695
0.895
Arid3a
M00115_2.00
Mus musculus
NDATHADDN
NHHTDATHN
PBM
Badis et al.(2009)
Arid3a_3875
0.695
0.895
Arid3a
M01660_2.00
Mus musculus
NDATHAADN
NHTTDATHN
PBM
Weirauch et al.(2014)
pTH5169
0.695
0.895
ARID3A
M01662_2.00
Procavia capensis
NNATHDNNN
NNNHDATNN
PBM
Weirauch et al.(2014)
pTH9384
0.695
0.895
Arid3a
M02651_2.00
Mus musculus
ATYAAA
TTTRAT
SELEX
Mathelier et al.(2014)
MA0151.1
0.695
0.895
ARID3A
M09766_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$DRI1_01
0.695
0.895
DDB_G0275333
M01656_2.00
Dictyostelium discoideum
NNATHDNNNN
NNNNHDATNN
PBM
Weirauch et al.(2014)
pTH5168
0.675
0.488
cfi-1
M01667_2.00
Caenorhabditis elegans
NNATHDNN
NNHDATNN
PBM
Weirauch et al.(2014)
pTH5118
0.657
0.756
retn
M01664_2.00
Drosophila melanogaster
NDATHRNN
NNYDATHN
PBM
Weirauch et al.(2014)
pTH5119
0.644
0.791
retn
M03590_2.00
Drosophila melanogaster
NNATTRATHN
NDATYAATNN
SELEX
Nitta et al.(2015)
retn_1
0.644
0.791
retn
M05899_2.00
Drosophila melanogaster
AATYAAAM
KTTTRATT
B1H
Zhu et al.(2011)
retn_SANGER_5_FBgn0004795
0.644
0.791
retn
M09768_2.00
Drosophila melanogaster
NNRATTAADN
NHTTAATYNN
Transfac
Matys et al.(2006)
I$DRI_01
0.644
0.791
ACYPI009013
M01655_2.00
Acyrthosiphon pisum
NDATHAADN
NHTTDATHN
PBM
Weirauch et al.(2014)
pTH5117
0.621
0.686
GSPATT00004674001
M01665_2.00
Paramecium tetraurelia
NNATYHNN
NNDRATNN
PBM
Weirauch et al.(2014)
pTH5124
0.508
0.419
TTHERM_00243900
M01666_2.00
Tetrahymena thermophila
NDDATYANN
NNTRATHHN
PBM
Weirauch et al.(2014)
pTH5128
0.508
0.372
For this family, TFs with SR scores >
0.422
will likely have a similar motif
Experimental Constructs
Motif ID
Domain
From
To
Sequence
M01659_2.00
ARID/BRIGHT
21
107
ERKEFLDDLFIFMQKRGTPINRIPIMAKQILDLYMLYKLVTEKGGLVEIINKKIWREITKGLNLPTSITSAAFTLRTQYMKYLYAYE
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSMUSP00000004780
ARID/BRIGHT
215
301
ERKEFLDDLFIFMQKRGTPINRIPIMAKQILDLYMLYKLVTEKGGLVEIINKKIWREITKGLNLPTSITSAAFTLRTQYMKYLYAYE
ENSMUSP00000096283
ARID/BRIGHT
215
301
ERKEFLDDLFIFMQKRGTPINRIPIMAKQILDLYMLYKLVTEKGGLVEIINKKIWREITKGLNLPTSITSAAFTLRTQYMKYLYAYE
ENSMUSP00000130173
ARID/BRIGHT
215
301
ERKEFLDDLFIFMQKRGTPINRIPIMAKQILDLYMLYKLVTEKGGLVEIINKKIWREITKGLNLPTSITSAAFTLRTQYMKYLYAYE
Links
Other
ARID/BRIGHT
family TFs
Other
Mus musculus
TFs
365 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy