ARID5A (Oryctolagus cuniculus)
ARID/BRIGHT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF01388 (ARID) IPR001606 ENSOCUG00000012101 T014671_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Arid5a
M00116_2.00
Mus musculus
NHAATATTDNN

NNHAATATTDN
PBM
Badis et al.(2009)
Arid5a_3770
0.490 0.840
Arid5a
M01663_2.00
Rattus norvegicus
NNNRWATHNN

NNDATWYNNN
PBM
Weirauch et al.(2014)
pTH5121
0.490 0.840
e_gw.4.260.1_CONSTRUCT
M01668_2.00
PBM CONSTRUCTS
NNNDATHNNN

NNNDATHNNN
PBM
Weirauch et al.(2014)
pTH5122
0.457 0.620
arid6
M01657_2.00
Danio rerio
NNRWATYN

NRATWYNN
PBM
Weirauch et al.(2014)
pTH5120
0.441 0.620
Arid5b
M01661_2.00
Mus musculus
NDATWHNN

NNDWATHN
PBM
Weirauch et al.(2014)
pTH4426
0.428 0.680
ARID5B
M08707_2.00
Homo sapiens
DNBKDRTATTSKD

HMSAATAYHMVNH
Misc
Kulakovskiy et al.(2013)
ARI5B_HUMAN.H11MO.0.C
0.428 0.680
Arid5b
M08708_2.00
Mus musculus
DNBKDRTATTSKD

HMSAATAYHMVNH
Misc
Kulakovskiy et al.(2013)
ARI5B_MOUSE.H11MO.0.C
0.428 0.680
ARID5B
M09767_2.00
Homo sapiens
KBDGTATTGTRSWB

VWSYACAATACHVM
Transfac
Matys et al.(2006)
V$MRF2_01
0.428 0.680
For this family, TFs with SR scores > 0.422 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSOCUP00000010410 ARID/BRIGHT 47 96

Links

Other ARID/BRIGHT family TFs
Other Oryctolagus cuniculus TFs

141 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Sb10g005580 Sorghum bicolor Sb10g005580 I 0.000
Traes_7DS_327FBC2CA Triticum aestivum Traes_7DS_327FBC2CA I 0.000
TRIUR3_24314 Triticum urartu TRIUR3_24314 I 0.000
TRIUR3_25342 Triticum urartu TRIUR3_25342 I 0.000
TRIUR3_26858 Triticum urartu TRIUR3_26858 I 0.000
TRIUR3_28229 Triticum urartu TRIUR3_28229 I 0.000
TRIUR3_31924 Triticum urartu TRIUR3_31924 I 0.000
VIT_04s0008g05900 Vitis vinifera VIT_04s0008g05900 I 0.000
VIT_11s0206g00060 Vitis vinifera VIT_11s0206g00060 I 0.000
Ca_03351 Cicer arietinum Ca_03351 I 0.000
Ca_09080 Cicer arietinum Ca_09080 I 0.000
Cla021325 Citrullus lanatus Cla021325 I 0.000
Pm005710 Prunus mume Pm005710 I 0.000
cassava37074.valid.m1 Manihot esculenta cassava37074.valid.m1 I 0.000
cassava37075.valid.m1 Manihot esculenta cassava37075.valid.m1 I 0.000
cassava8114.valid.m1 Manihot esculenta cassava8114.valid.m1 I 0.000
Cucsa.271670 Cucumis sativus Cucsa.271670 I 0.000
Traes_7DS_22DE624A5 Triticum aestivum Traes_7DS_22DE624A5 I 0.000
Traes_7AS_DECB8080D Triticum aestivum Traes_7AS_DECB8080D I 0.000
Traes_7AS_503B57D77 Triticum aestivum Traes_7AS_503B57D77 I 0.000
SELMODRAFT_36646 Selaginella moellendorffii SELMODRAFT_36646 I 0.000
Si006013m.g Setaria italica Si006013m.g I 0.000
Si016546m.g Setaria italica Si016546m.g I 0.000
Si016630m.g Setaria italica Si016630m.g I 0.000
Si034517m.g Setaria italica Si034517m.g I 0.000
Solyc07g005140.2 Solanum lycopersicum Solyc07g005140.2 I 0.000
TCM_036926 Theobroma cacao TCM_036926 I 0.000
Traes_4AS_6486B493A Triticum aestivum Traes_4AS_6486B493A I 0.000
Traes_4BL_941E7DE4D Triticum aestivum Traes_4BL_941E7DE4D I 0.000
Traes_4DL_2527CA8BF Triticum aestivum Traes_4DL_2527CA8BF I 0.000
Traes_6AL_9C9D677D4 Triticum aestivum Traes_6AL_9C9D677D4 I 0.000
Traes_6AS_A42E71A00 Triticum aestivum Traes_6AS_A42E71A00 I 0.000
Traes_6BL_790C095EE Triticum aestivum Traes_6BL_790C095EE I 0.000
Traes_6BS_B50BEBC7E Triticum aestivum Traes_6BS_B50BEBC7E I 0.000
Traes_6DL_D1C9CE275 Triticum aestivum Traes_6DL_D1C9CE275 I 0.000
Traes_6DS_EF4A57213 Triticum aestivum Traes_6DS_EF4A57213 I 0.000
EuGene.0000090108 Micromonas pusilla EuGene.0000090108 I 0.000
gw1.104.128.1 Physcomitrella patens gw1.104.128.1 I 0.000
Pavir.Ab00568 Panicum virgatum Pavir.Ab00568 I 0.000
Pavir.Da02067 Panicum virgatum Pavir.Da02067 I 0.000
Pavir.Ia04946 Panicum virgatum Pavir.Ia04946 I 0.000
Pavir.Ib00921 Panicum virgatum Pavir.Ib00921 I 0.000
Pavir.J08270 Panicum virgatum Pavir.J08270 I 0.000
Pavir.J35630 Panicum virgatum Pavir.J35630 I 0.000
SapurV1A.0015s0530 Salix purpurea SapurV1A.0015s0530 I 0.000
SapurV1A.0159s0180 Salix purpurea SapurV1A.0159s0180 I 0.000
SapurV1A.0705s0030 Salix purpurea SapurV1A.0705s0030 I 0.000
SapurV1A.0730s0060 Salix purpurea SapurV1A.0730s0060 I 0.000
SapurV1A.1916s0020 Salix purpurea SapurV1A.1916s0020 I 0.000
Thhalv10004402m.g Eutrema salsugineum Thhalv10004402m.g I 0.000
PK02601.1 Cannabis sativa PK02601.1 I 0.000
PDK_20s1342911g003 Phoenix dactylifera PDK_20s1342911g003 I 0.000
PDK_20s1346241g001 Phoenix dactylifera PDK_20s1346241g001 I 0.000
PDK_20s1362511g001 Phoenix dactylifera PDK_20s1362511g001 I 0.000
Pavir.Aa03151 Panicum virgatum Pavir.Aa03151 I 0.000
orange1.1g005465m.g Citrus sinensis orange1.1g005465m.g I 0.000
Lus10041020.g Linum usitatissimum Lus10041020.g I 0.000
gw1.27.80.1 Physcomitrella patens gw1.27.80.1 I 0.000
gw1.29.164.1 Physcomitrella patens gw1.29.164.1 I 0.000
gw1.29.165.1 Physcomitrella patens gw1.29.165.1 I 0.000
mg021488m Mimulus guttatus mg021488m I 0.000
mgf001591m Mimulus guttatus mgf001591m I 0.000
mgf013006m Mimulus guttatus mgf013006m I 0.000
mgf014863m Mimulus guttatus mgf014863m I 0.000
Aquca_016_00168 Aquilegia coerulea Aquca_016_00168 I 0.000
Ciclev10004989m.g Citrus clementina Ciclev10004989m.g I 0.000
Ciclev10007639m.g Citrus clementina Ciclev10007639m.g I 0.000
EuGene.0600010100 Micromonas sp RCC299 EuGene.0600010100 I 0.000
gene15029-v1.0-hybrid Fragaria vesca gene15029-v1.0-hybrid I 0.000
Gorai.001G030600 Gossypium raimondii Gorai.001G030600 I 0.000
Gorai.009G061000 Gossypium raimondii Gorai.009G061000 I 0.000
Gorai.010G243900 Gossypium raimondii Gorai.010G243900 I 0.000
Lus10005340.g Linum usitatissimum Lus10005340.g I 0.000
PDK_20s1782651g001 Phoenix dactylifera PDK_20s1782651g001 I 0.000
AMTR_s00019p00208460 Amborella trichopoda AMTR_s00019p00208460 I 0.000
GLYMA17G33230 Glycine max GLYMA17G33230 I 0.000
GRMZM2G060485 Zea mays GRMZM2G060485 I 0.000
GRMZM2G099797 Zea mays GRMZM2G099797 I 0.000
GRMZM2G126834 Zea mays GRMZM2G126834 I 0.000
GRMZM2G409974 Zea mays GRMZM2G409974 I 0.000
GRMZM2G479110 Zea mays GRMZM2G479110 I 0.000
GSMUA_Achr11G05340_001 Musa acuminata GSMUA_Achr11G05340_001 I 0.000
LPERR02G05460 Leersia perrieri LPERR02G05460 I 0.000
LPERR03G08040 Leersia perrieri LPERR03G08040 I 0.000
LPERR06G04900 Leersia perrieri LPERR06G04900 I 0.000
MLOC_11341 Hordeum vulgare MLOC_11341 I 0.000
MLOC_3955 Hordeum vulgare MLOC_3955 I 0.000
MLOC_61880 Hordeum vulgare MLOC_61880 I 0.000
MLOC_76165 Hordeum vulgare MLOC_76165 I 0.000
OB02G15530 Oryza brachyantha OB02G15530 I 0.000
OB02G42700 Oryza brachyantha OB02G42700 I 0.000
GLYMA14G13320 Glycine max GLYMA14G13320 I 0.000
GLYMA06G06730 Glycine max GLYMA06G06730 I 0.000
AMTR_s00101p00128190 Amborella trichopoda AMTR_s00101p00128190 I 0.000
RR23 Oryza indica BGIOSGA005436 I 0.000
RR24 Oryza indica BGIOSGA007015 I 0.000
RR21 Oryza indica BGIOSGA012149 I 0.000
RR22 Oryza indica BGIOSGA022430 I 0.000
Bo1g010830 Brassica oleracea Bo1g010830 I 0.000
BRADI1G47400 Brachypodium distachyon BRADI1G47400 I 0.000
BRADI1G69480 Brachypodium distachyon BRADI1G69480 I 0.000
BRADI3G06120 Brachypodium distachyon BRADI3G06120 I 0.000
BRADI3G54120 Brachypodium distachyon BRADI3G54120 I 0.000
F775_13501 Aegilops tauschii F775_13501 I 0.000
F775_14758 Aegilops tauschii F775_14758 I 0.000
F775_19079 Aegilops tauschii F775_19079 I 0.000
F775_26936 Aegilops tauschii F775_26936 I 0.000
F775_32153 Aegilops tauschii F775_32153 I 0.000
GLYMA04G06650 Glycine max GLYMA04G06650 I 0.000
OB03G19140 Oryza brachyantha OB03G19140 I 0.000
OB06G14930 Oryza brachyantha OB06G14930 I 0.000
ORGLA02G0311700 Oryza glaberrima ORGLA02G0311700 I 0.000
ORGLA03G0086800 Oryza glaberrima ORGLA03G0086800 I 0.000
ORGLA06G0048800 Oryza glaberrima ORGLA06G0048800 I 0.000
ORUFI02G06340 Oryza rufipogon ORUFI02G06340 I 0.000
ORUFI03G09090 Oryza rufipogon ORUFI03G09090 I 0.000
ORUFI06G05490 Oryza rufipogon ORUFI06G05490 I 0.000
RR24 Oryza sativa OS02G0182100 I 0.000
RR23 Oryza sativa OS02G0796500 I 0.000
RR21 Oryza sativa OS03G0224200 I 0.000
RR22 Oryza sativa OS06G0183100 I 0.000
PGSC0003DMG400003196 Solanum tuberosum PGSC0003DMG400003196 I 0.000
POPTR_0006s03340 Populus trichocarpa POPTR_0006s03340 I 0.000
POPTR_0008s13490 Populus trichocarpa POPTR_0008s13490 I 0.000
POPTR_0016s03240 Populus trichocarpa POPTR_0016s03240 I 0.000
PRUPE_ppa024819mg Prunus persica PRUPE_ppa024819mg I 0.000
Sb01g042400 Sorghum bicolor Sb01g042400 I 0.000
Sb04g005580 Sorghum bicolor Sb04g005580 I 0.000
ORGLA02G0057500 Oryza glaberrima ORGLA02G0057500 I 0.000
Sb04g035980 Sorghum bicolor Sb04g035980 I 0.000
OBART02G06200 Oryza barthii OBART02G06200 I 0.000
OBART03G08950 Oryza barthii OBART03G08950 I 0.000
OBART06G05360 Oryza barthii OBART06G05360 I 0.000
OGLUM02G06200 Oryza glumaepatula OGLUM02G06200 I 0.000
OGLUM03G09080 Oryza glumaepatula OGLUM03G09080 I 0.000
OGLUM06G05540 Oryza glumaepatula OGLUM06G05540 I 0.000
OLONG_002370 Oryza longistaminata OLONG_002370 I 0.000
OLONG_007266 Oryza longistaminata OLONG_007266 I 0.000
OMERI02G07120 Oryza meridionalis OMERI02G07120 I 0.000
OMERI03G08390 Oryza meridionalis OMERI03G08390 I 0.000
OMERI06G06380 Oryza meridionalis OMERI06G06380 I 0.000
ONIVA02G07230 Oryza nivara ONIVA02G07230 I 0.000
ONIVA06G01160 Oryza nivara ONIVA06G01160 I 0.000
ONIVA06G06160 Oryza nivara ONIVA06G06160 I 0.000
OPUNC03G08640 Oryza punctata OPUNC03G08640 I 0.000
OPUNC06G05150 Oryza punctata OPUNC06G05150 I 0.000
GLYMA17G08380 Glycine max GLYMA17G08380 N 0.000
GLYMA14G19985 Glycine max GLYMA14G19985 N 0.000