CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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ARID5A
(
Oryctolagus cuniculus
)
ARID/BRIGHT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF01388 (ARID)
IPR001606
ENSOCUG00000012101
T014671_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Arid5a
M00116_2.00
Mus musculus
NHAATATTDNN
NNHAATATTDN
PBM
Badis et al.(2009)
Arid5a_3770
0.490
0.840
Arid5a
M01663_2.00
Rattus norvegicus
NNNRWATHNN
NNDATWYNNN
PBM
Weirauch et al.(2014)
pTH5121
0.490
0.840
e_gw.4.260.1_CONSTRUCT
M01668_2.00
PBM CONSTRUCTS
NNNDATHNNN
NNNDATHNNN
PBM
Weirauch et al.(2014)
pTH5122
0.457
0.620
arid6
M01657_2.00
Danio rerio
NNRWATYN
NRATWYNN
PBM
Weirauch et al.(2014)
pTH5120
0.441
0.620
Arid5b
M01661_2.00
Mus musculus
NDATWHNN
NNDWATHN
PBM
Weirauch et al.(2014)
pTH4426
0.428
0.680
ARID5B
M08707_2.00
Homo sapiens
DNBKDRTATTSKD
HMSAATAYHMVNH
Misc
Kulakovskiy et al.(2013)
ARI5B_HUMAN.H11MO.0.C
0.428
0.680
Arid5b
M08708_2.00
Mus musculus
DNBKDRTATTSKD
HMSAATAYHMVNH
Misc
Kulakovskiy et al.(2013)
ARI5B_MOUSE.H11MO.0.C
0.428
0.680
ARID5B
M09767_2.00
Homo sapiens
KBDGTATTGTRSWB
VWSYACAATACHVM
Transfac
Matys et al.(2006)
V$MRF2_01
0.428
0.680
For this family, TFs with SR scores >
0.422
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSOCUP00000010410
ARID/BRIGHT
47
96
TRQWRSWGAYEQVTGRRLWKNVYDELGGSPGSTSAATCTRRHYERLVLPY
Links
Other
ARID/BRIGHT
family TFs
Other
Oryctolagus cuniculus
TFs
141 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Sb10g005580
Sorghum bicolor
Sb10g005580
I
0.000
Traes_7DS_327FBC2CA
Triticum aestivum
Traes_7DS_327FBC2CA
I
0.000
TRIUR3_24314
Triticum urartu
TRIUR3_24314
I
0.000
TRIUR3_25342
Triticum urartu
TRIUR3_25342
I
0.000
TRIUR3_26858
Triticum urartu
TRIUR3_26858
I
0.000
TRIUR3_28229
Triticum urartu
TRIUR3_28229
I
0.000
TRIUR3_31924
Triticum urartu
TRIUR3_31924
I
0.000
VIT_04s0008g05900
Vitis vinifera
VIT_04s0008g05900
I
0.000
VIT_11s0206g00060
Vitis vinifera
VIT_11s0206g00060
I
0.000
Ca_03351
Cicer arietinum
Ca_03351
I
0.000
Ca_09080
Cicer arietinum
Ca_09080
I
0.000
Cla021325
Citrullus lanatus
Cla021325
I
0.000
Pm005710
Prunus mume
Pm005710
I
0.000
cassava37074.valid.m1
Manihot esculenta
cassava37074.valid.m1
I
0.000
cassava37075.valid.m1
Manihot esculenta
cassava37075.valid.m1
I
0.000
cassava8114.valid.m1
Manihot esculenta
cassava8114.valid.m1
I
0.000
Cucsa.271670
Cucumis sativus
Cucsa.271670
I
0.000
Traes_7DS_22DE624A5
Triticum aestivum
Traes_7DS_22DE624A5
I
0.000
Traes_7AS_DECB8080D
Triticum aestivum
Traes_7AS_DECB8080D
I
0.000
Traes_7AS_503B57D77
Triticum aestivum
Traes_7AS_503B57D77
I
0.000
SELMODRAFT_36646
Selaginella moellendorffii
SELMODRAFT_36646
I
0.000
Si006013m.g
Setaria italica
Si006013m.g
I
0.000
Si016546m.g
Setaria italica
Si016546m.g
I
0.000
Si016630m.g
Setaria italica
Si016630m.g
I
0.000
Si034517m.g
Setaria italica
Si034517m.g
I
0.000
Solyc07g005140.2
Solanum lycopersicum
Solyc07g005140.2
I
0.000
TCM_036926
Theobroma cacao
TCM_036926
I
0.000
Traes_4AS_6486B493A
Triticum aestivum
Traes_4AS_6486B493A
I
0.000
Traes_4BL_941E7DE4D
Triticum aestivum
Traes_4BL_941E7DE4D
I
0.000
Traes_4DL_2527CA8BF
Triticum aestivum
Traes_4DL_2527CA8BF
I
0.000
Traes_6AL_9C9D677D4
Triticum aestivum
Traes_6AL_9C9D677D4
I
0.000
Traes_6AS_A42E71A00
Triticum aestivum
Traes_6AS_A42E71A00
I
0.000
Traes_6BL_790C095EE
Triticum aestivum
Traes_6BL_790C095EE
I
0.000
Traes_6BS_B50BEBC7E
Triticum aestivum
Traes_6BS_B50BEBC7E
I
0.000
Traes_6DL_D1C9CE275
Triticum aestivum
Traes_6DL_D1C9CE275
I
0.000
Traes_6DS_EF4A57213
Triticum aestivum
Traes_6DS_EF4A57213
I
0.000
EuGene.0000090108
Micromonas pusilla
EuGene.0000090108
I
0.000
gw1.104.128.1
Physcomitrella patens
gw1.104.128.1
I
0.000
Pavir.Ab00568
Panicum virgatum
Pavir.Ab00568
I
0.000
Pavir.Da02067
Panicum virgatum
Pavir.Da02067
I
0.000
Pavir.Ia04946
Panicum virgatum
Pavir.Ia04946
I
0.000
Pavir.Ib00921
Panicum virgatum
Pavir.Ib00921
I
0.000
Pavir.J08270
Panicum virgatum
Pavir.J08270
I
0.000
Pavir.J35630
Panicum virgatum
Pavir.J35630
I
0.000
SapurV1A.0015s0530
Salix purpurea
SapurV1A.0015s0530
I
0.000
SapurV1A.0159s0180
Salix purpurea
SapurV1A.0159s0180
I
0.000
SapurV1A.0705s0030
Salix purpurea
SapurV1A.0705s0030
I
0.000
SapurV1A.0730s0060
Salix purpurea
SapurV1A.0730s0060
I
0.000
SapurV1A.1916s0020
Salix purpurea
SapurV1A.1916s0020
I
0.000
Thhalv10004402m.g
Eutrema salsugineum
Thhalv10004402m.g
I
0.000
PK02601.1
Cannabis sativa
PK02601.1
I
0.000
PDK_20s1342911g003
Phoenix dactylifera
PDK_20s1342911g003
I
0.000
PDK_20s1346241g001
Phoenix dactylifera
PDK_20s1346241g001
I
0.000
PDK_20s1362511g001
Phoenix dactylifera
PDK_20s1362511g001
I
0.000
Pavir.Aa03151
Panicum virgatum
Pavir.Aa03151
I
0.000
orange1.1g005465m.g
Citrus sinensis
orange1.1g005465m.g
I
0.000
Lus10041020.g
Linum usitatissimum
Lus10041020.g
I
0.000
gw1.27.80.1
Physcomitrella patens
gw1.27.80.1
I
0.000
gw1.29.164.1
Physcomitrella patens
gw1.29.164.1
I
0.000
gw1.29.165.1
Physcomitrella patens
gw1.29.165.1
I
0.000
mg021488m
Mimulus guttatus
mg021488m
I
0.000
mgf001591m
Mimulus guttatus
mgf001591m
I
0.000
mgf013006m
Mimulus guttatus
mgf013006m
I
0.000
mgf014863m
Mimulus guttatus
mgf014863m
I
0.000
Aquca_016_00168
Aquilegia coerulea
Aquca_016_00168
I
0.000
Ciclev10004989m.g
Citrus clementina
Ciclev10004989m.g
I
0.000
Ciclev10007639m.g
Citrus clementina
Ciclev10007639m.g
I
0.000
EuGene.0600010100
Micromonas sp RCC299
EuGene.0600010100
I
0.000
gene15029-v1.0-hybrid
Fragaria vesca
gene15029-v1.0-hybrid
I
0.000
Gorai.001G030600
Gossypium raimondii
Gorai.001G030600
I
0.000
Gorai.009G061000
Gossypium raimondii
Gorai.009G061000
I
0.000
Gorai.010G243900
Gossypium raimondii
Gorai.010G243900
I
0.000
Lus10005340.g
Linum usitatissimum
Lus10005340.g
I
0.000
PDK_20s1782651g001
Phoenix dactylifera
PDK_20s1782651g001
I
0.000
AMTR_s00019p00208460
Amborella trichopoda
AMTR_s00019p00208460
I
0.000
GLYMA17G33230
Glycine max
GLYMA17G33230
I
0.000
GRMZM2G060485
Zea mays
GRMZM2G060485
I
0.000
GRMZM2G099797
Zea mays
GRMZM2G099797
I
0.000
GRMZM2G126834
Zea mays
GRMZM2G126834
I
0.000
GRMZM2G409974
Zea mays
GRMZM2G409974
I
0.000
GRMZM2G479110
Zea mays
GRMZM2G479110
I
0.000
GSMUA_Achr11G05340_001
Musa acuminata
GSMUA_Achr11G05340_001
I
0.000
LPERR02G05460
Leersia perrieri
LPERR02G05460
I
0.000
LPERR03G08040
Leersia perrieri
LPERR03G08040
I
0.000
LPERR06G04900
Leersia perrieri
LPERR06G04900
I
0.000
MLOC_11341
Hordeum vulgare
MLOC_11341
I
0.000
MLOC_3955
Hordeum vulgare
MLOC_3955
I
0.000
MLOC_61880
Hordeum vulgare
MLOC_61880
I
0.000
MLOC_76165
Hordeum vulgare
MLOC_76165
I
0.000
OB02G15530
Oryza brachyantha
OB02G15530
I
0.000
OB02G42700
Oryza brachyantha
OB02G42700
I
0.000
GLYMA14G13320
Glycine max
GLYMA14G13320
I
0.000
GLYMA06G06730
Glycine max
GLYMA06G06730
I
0.000
AMTR_s00101p00128190
Amborella trichopoda
AMTR_s00101p00128190
I
0.000
RR23
Oryza indica
BGIOSGA005436
I
0.000
RR24
Oryza indica
BGIOSGA007015
I
0.000
RR21
Oryza indica
BGIOSGA012149
I
0.000
RR22
Oryza indica
BGIOSGA022430
I
0.000
Bo1g010830
Brassica oleracea
Bo1g010830
I
0.000
BRADI1G47400
Brachypodium distachyon
BRADI1G47400
I
0.000
BRADI1G69480
Brachypodium distachyon
BRADI1G69480
I
0.000
BRADI3G06120
Brachypodium distachyon
BRADI3G06120
I
0.000
BRADI3G54120
Brachypodium distachyon
BRADI3G54120
I
0.000
F775_13501
Aegilops tauschii
F775_13501
I
0.000
F775_14758
Aegilops tauschii
F775_14758
I
0.000
F775_19079
Aegilops tauschii
F775_19079
I
0.000
F775_26936
Aegilops tauschii
F775_26936
I
0.000
F775_32153
Aegilops tauschii
F775_32153
I
0.000
GLYMA04G06650
Glycine max
GLYMA04G06650
I
0.000
OB03G19140
Oryza brachyantha
OB03G19140
I
0.000
OB06G14930
Oryza brachyantha
OB06G14930
I
0.000
ORGLA02G0311700
Oryza glaberrima
ORGLA02G0311700
I
0.000
ORGLA03G0086800
Oryza glaberrima
ORGLA03G0086800
I
0.000
ORGLA06G0048800
Oryza glaberrima
ORGLA06G0048800
I
0.000
ORUFI02G06340
Oryza rufipogon
ORUFI02G06340
I
0.000
ORUFI03G09090
Oryza rufipogon
ORUFI03G09090
I
0.000
ORUFI06G05490
Oryza rufipogon
ORUFI06G05490
I
0.000
RR24
Oryza sativa
OS02G0182100
I
0.000
RR23
Oryza sativa
OS02G0796500
I
0.000
RR21
Oryza sativa
OS03G0224200
I
0.000
RR22
Oryza sativa
OS06G0183100
I
0.000
PGSC0003DMG400003196
Solanum tuberosum
PGSC0003DMG400003196
I
0.000
POPTR_0006s03340
Populus trichocarpa
POPTR_0006s03340
I
0.000
POPTR_0008s13490
Populus trichocarpa
POPTR_0008s13490
I
0.000
POPTR_0016s03240
Populus trichocarpa
POPTR_0016s03240
I
0.000
PRUPE_ppa024819mg
Prunus persica
PRUPE_ppa024819mg
I
0.000
Sb01g042400
Sorghum bicolor
Sb01g042400
I
0.000
Sb04g005580
Sorghum bicolor
Sb04g005580
I
0.000
ORGLA02G0057500
Oryza glaberrima
ORGLA02G0057500
I
0.000
Sb04g035980
Sorghum bicolor
Sb04g035980
I
0.000
OBART02G06200
Oryza barthii
OBART02G06200
I
0.000
OBART03G08950
Oryza barthii
OBART03G08950
I
0.000
OBART06G05360
Oryza barthii
OBART06G05360
I
0.000
OGLUM02G06200
Oryza glumaepatula
OGLUM02G06200
I
0.000
OGLUM03G09080
Oryza glumaepatula
OGLUM03G09080
I
0.000
OGLUM06G05540
Oryza glumaepatula
OGLUM06G05540
I
0.000
OLONG_002370
Oryza longistaminata
OLONG_002370
I
0.000
OLONG_007266
Oryza longistaminata
OLONG_007266
I
0.000
OMERI02G07120
Oryza meridionalis
OMERI02G07120
I
0.000
OMERI03G08390
Oryza meridionalis
OMERI03G08390
I
0.000
OMERI06G06380
Oryza meridionalis
OMERI06G06380
I
0.000
ONIVA02G07230
Oryza nivara
ONIVA02G07230
I
0.000
ONIVA06G01160
Oryza nivara
ONIVA06G01160
I
0.000
ONIVA06G06160
Oryza nivara
ONIVA06G06160
I
0.000
OPUNC03G08640
Oryza punctata
OPUNC03G08640
I
0.000
OPUNC06G05150
Oryza punctata
OPUNC06G05150
I
0.000
GLYMA17G08380
Glycine max
GLYMA17G08380
N
0.000
GLYMA14G19985
Glycine max
GLYMA14G19985
N
0.000