nRc.2.0.1.g09267 (Romanomermis culicivorax)
ARID/BRIGHT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF01388 (ARID) IPR001606 nRc.2.0.1.g09267 T016641_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ARID3A
M01658_2.00
Microcebus murinus
NDATHAWDN

NHWTDATHN
PBM
Weirauch et al.(2014)
pTH9214
0.545 0.775
Arid3a
M00115_2.00
Mus musculus
NDATHADDN

NHHTDATHN
PBM
Badis et al.(2009)
Arid3a_3875
0.545 0.775
Arid3a
M01660_2.00
Mus musculus
NDATHAADN

NHTTDATHN
PBM
Weirauch et al.(2014)
pTH5169
0.545 0.775
Arid3a
M02651_2.00
Mus musculus
ATYAAA

TTTRAT
SELEX
Mathelier et al.(2014)
MA0151.1
0.545 0.775
ARID3A
M09766_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$DRI1_01
0.545 0.775
ARID3A
M01662_2.00
Procavia capensis
NNATHDNNN

NNNHDATNN
PBM
Weirauch et al.(2014)
pTH9384
0.545 0.764
DDB_G0275333
M01656_2.00
Dictyostelium discoideum
NNATHDNNNN

NNNNHDATNN
PBM
Weirauch et al.(2014)
pTH5168
0.536 0.461
cfi-1
M01667_2.00
Caenorhabditis elegans
NNATHDNN

NNHDATNN
PBM
Weirauch et al.(2014)
pTH5118
0.535 0.719
Arid3b
M01659_2.00
Mus musculus
NNDATTAAWWN

NWWTTAATHNN
PBM
Weirauch et al.(2014)
pTH4425
0.515 0.730
retn
M01664_2.00
Drosophila melanogaster
NDATHRNN

NNYDATHN
PBM
Weirauch et al.(2014)
pTH5119
0.508 0.730
retn
M03590_2.00
Drosophila melanogaster
NNATTRATHN

NDATYAATNN
SELEX
Nitta et al.(2015)
retn_1
0.508 0.730
retn
M05899_2.00
Drosophila melanogaster
AATYAAAM

KTTTRATT
B1H
Zhu et al.(2011)
retn_SANGER_5_FBgn0004795
0.508 0.730
retn
M09768_2.00
Drosophila melanogaster
NNRATTAADN

NHTTAATYNN
Transfac
Matys et al.(2006)
I$DRI_01
0.508 0.730
ACYPI009013
M01655_2.00
Acyrthosiphon pisum
NDATHAADN

NHTTDATHN
PBM
Weirauch et al.(2014)
pTH5117
0.485 0.596
For this family, TFs with SR scores > 0.422 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
nRc.2.0.1.t09267-RA ARID/BRIGHT 288 384

Links

Other ARID/BRIGHT family TFs
Other Romanomermis culicivorax TFs

325 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ENSAMEG00000010613 Ailuropoda melanoleuca ENSAMEG00000010613 I 0.000
IRF7 Bos taurus ENSBTAG00000047680 I 0.000
IRF7 Callithrix jacchus ENSCJAG00000012124 I 0.000
ENSCSAG00000010883 Chlorocebus sabaeus ENSCSAG00000010883 I 0.000
IRF7 Dasypus novemcinctus ENSDNOG00000006293 I 0.000
Irf7 Dipodomys ordii ENSDORG00000014096 I 0.000
IRF7 Equus caballus ENSECAG00000009744 I 0.000
IRF7 Echinops telfairi ENSETEG00000004078 I 0.000
IRF7 Felis catus ENSFCAG00000031821 I 0.000
IRF7 Homo sapiens ENSG00000185507 D 0.000
IRF7 Gorilla gorilla ENSGGOG00000008341 I 0.000
IRF7 Loxodonta africana ENSLAFG00000032120 I 0.000
IRF7 Macaca mulatta ENSMMUG00000004014 I 0.000
ENSMPUG00000008845 Mustela putorius furo ENSMPUG00000008845 I 0.000
Irf7 Mus musculus ENSMUSG00000025498 D 0.000
ENSNLEG00000008419 Nomascus leucogenys ENSNLEG00000008419 I 0.000
ENSOARG00000006626 Ovis aries ENSOARG00000006626 I 0.000
IRF7 Oryctolagus cuniculus ENSOCUG00000002339 I 0.000
IRF7 Ochotona princeps ENSOPRG00000005519 N 0.000
ENSP00000329411-D1 Bos grunniens ENSP00000329411-D1 I 0.000
ENSPANG00000007390 Papio anubis ENSPANG00000007390 I 0.000
IRF7 Procavia capensis ENSPCAG00000010286 I 0.000
IRF7 Pan troglodytes ENSPTRG00000003126 I 0.000
IRF7 Pteropus vampyrus ENSPVAG00000006873 I 0.000
Irf7 Rattus norvegicus ENSRNOG00000017414 I 0.000
ENSSHAG00000004173 Sarcophilus harrisii ENSSHAG00000004173 I 0.000
IRF7 Sus scrofa ENSSSCG00000012853 I 0.000
ENSSTOG00000005711 Ictidomys tridecemlineatus ENSSTOG00000005711 I 0.000
IRF7 Tursiops truncatus ENSTTRG00000011148 I 0.000