NCU01145 (Neurospora crassa)
AT hook

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02178 (AT_hook) IPR017956 NCU01145 T018087_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
NCU01145
M01693_2.00
Neurospora crassa
RWATAWWTNN

NNAWWTATWY
PBM
Weirauch et al.(2014)
pTH8916
(Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
athp-3
M01691_2.00
Caenorhabditis elegans
NNDDWDH

DHWHHNN
PBM
Weirauch et al.(2014)
pTH9097
0.991 0.516
HMG-I Y
M02652_2.00
Pisum sativum
NDWVAAANRVMRWMAY

RTKWYKBYNTTTBWHN
SELEX
Mathelier et al.(2014)
MA0045.1
0.991 0.468
HMGA
M01671_2.00
Arabidopsis thaliana
NNNNDWAWH

DWTWHNNNN
PBM
Weirauch et al.(2014)
pTH7395
0.991 0.452
ENSPPYG00000004736
M01685_2.00
Pongo abelii
NNNNDWWW

WWWHNNNN
PBM
Weirauch et al.(2014)
pTH9279
0.991 0.387
Hmga2
M00751_2.00
Mus musculus
NNNNRHWWNN

NNWWDYNNNN
PBM
Weirauch et al.(2013)
pTH3046
0.991 0.371
HMGA2
M09771_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HMGA2_01
0.991 0.371
HMGA1
M09769_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HMGIY_01
0.991 0.371
HMGA1
M09770_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HMGIY_Q4
0.991 0.371
hmg-12
M01690_2.00
Caenorhabditis elegans
NNAWWTAWWTNN

NNAWWTAWWTNN
PBM
Weirauch et al.(2014)
pTH8997
0.991 0.333
ANIA_01690
M01675_2.00
Aspergillus nidulans
NNNNRHDDN

NHHDYNNNN
PBM
Weirauch et al.(2014)
pTH8216
0.991 0.306
FGRRES_05233
M01104_2.00
Fusarium graminearum
NNNDWWAWWH

DWWTWWHNNN
PBM
Lambert et al.(2019)
pTH11377
0.991 0.290
NCU05635
M01694_2.00
Neurospora crassa
NNNWWWWNNN

NNNWWWWNNN
PBM
Weirauch et al.(2014)
pTH8863
0.991 0.274
FGRRES_17512
M01105_2.00
Fusarium graminearum
NNNDNWWWW

WWWWNHNNN
PBM
Lambert et al.(2019)
pTH11412
0.991 0.242
AHL13
M01672_2.00
Arabidopsis thaliana
NAWWTAWWWN

NWWWTAWWTN
PBM
Weirauch et al.(2014)
pTH8202
0.991 0.226
BRADI3G55950
M01673_2.00
Brachypodium distachyon
NNNNRHDDN

NHHDYNNNN
PBM
Weirauch et al.(2014)
pTH9369
0.991 0.226
OS02G0824300
M01688_2.00
Oryza sativa
NNDWAWWN

NWWTWHNN
PBM
Weirauch et al.(2014)
pTH8406
0.991 0.226
SUM1
M00008_2.00
Saccharomyces cerevisiae
NNDWWWH

DWWWHNN
PBM
Badis et al.(2008)
SUM1_2124
0.991 0.226
SUM1
M07439_2.00
Saccharomyces cerevisiae
DWAAATWWN

NWWATTTWH
PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0398.1
0.991 0.226
SUM1
M08478_2.00
Saccharomyces cerevisiae
RYGWCASWAAW

WTTWSTGWCRY
Misc
DeBoer et al.(2011)
YDR310C_383
0.991 0.226
SUM1
M08479_2.00
Saccharomyces cerevisiae
DWAAATWWN

NWWATTTWH
Misc
DeBoer et al.(2011)
YDR310C_478
0.991 0.226
Q7DLU9_PEA
M09772_2.00
Pisum sativum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$HMGIY_01
0.991 0.226
VIT_08s0007g04020
M01689_2.00
Vitis vinifera
DBNDDDDDDN

NHHHHHHNVH
PBM
Weirauch et al.(2014)
pTH9295
0.991 0.210
TVAG_474020
M01106_2.00
Trichomonas vaginalis
DNWWWAWW

WWTWWWNH
PBM
Lambert et al.(2019)
pTH11493
0.991 0.210
PK26376.1
M01108_2.00
Cannabis sativa
DDWWWAWW

WWTWWWHH
PBM
Lambert et al.(2019)
pTH11261
0.991 0.145
BRADI5G22430
M01674_2.00
Brachypodium distachyon
VNRDDDHDD

HHDHHHYNB
PBM
Weirauch et al.(2014)
pTH9242
0.991 0.129
ATEG_07399
M01676_2.00
Aspergillus terreus
DHNNHNDWWW

WWWHNDNNDH
PBM
Weirauch et al.(2014)
pTH9237
0.991 0.129
kmt2cb
M01679_2.00
Danio rerio
WWAWAWAT

ATWTWTWW
PBM
Weirauch et al.(2014)
pTH7876
0.991 0.129
phf21ab
M01680_2.00
Gasterosteus aculeatus
AAAAWAAA

TTTWTTTT
PBM
Weirauch et al.(2014)
pTH9180
0.991 0.129
Xrp1
M01686_2.00
Drosophila melanogaster
NNNNDWAWW

WWTWHNNNN
PBM
Weirauch et al.(2014)
pTH9260
0.991 0.129
Xrp1
M05900_2.00
Drosophila melanogaster
RTKRYGYAAT

ATTRCRYMAY
B1H
Zhu et al.(2011)
Xrp1_CG6272_SANGER_5_FBgn0261113
0.991 0.129
ENSACAG00000014978
M01677_2.00
Anolis carolinensis
NNNNNDRH

DYHNNNNN
PBM
Weirauch et al.(2014)
pTH9222
0.991 0.113
phf21ab
M01678_2.00
Danio rerio
NNNDNADW

WHTNHNNN
PBM
Weirauch et al.(2014)
pTH9254
0.991 0.113
PHF21A
M01681_2.00
Meleagris gallopavo
HDNHNNDNHD

HDNHNNDNHD
PBM
Weirauch et al.(2014)
pTH7875
0.991 0.113
PHF21A
M01103_2.00
Monodelphis domestica
NNNAWATWAATN

NATTWATWTNNN
PBM
Lambert et al.(2019)
pTH9309
0.991 0.113
PHF21A
M01682_2.00
Monodelphis domestica
NNNNNHRH

DYDNNNNN
PBM
Weirauch et al.(2014)
pTH9335
0.991 0.113
Setbp1
M01683_2.00
Mus musculus
NDNNNNNNHN

NDNNNNNNHN
PBM
Weirauch et al.(2014)
pTH1294
0.991 0.113
Ahctf1
M00750_2.00
Mus musculus
AAAWAWAW

ATWTWTTT
PBM
Weirauch et al.(2013)
pTH2361
0.991 0.113
Phf21a
M01684_2.00
Mus musculus
NNNATATWAATN

NATTWATATNNN
PBM
Weirauch et al.(2014)
pTH8550
0.991 0.113
MTR_4g101990
M01687_2.00
Medicago truncatula
AAAWTAAT

ATTAWTTT
PBM
Weirauch et al.(2014)
pTH9209
0.991 0.113
estExt_fgeneshNG_pg.C_820014
M01692_2.00
Naegleria gruberi
NNNNNDRH

DYHNNNNN
PBM
Weirauch et al.(2014)
pTH9380
0.991 0.113
PK00377.1
M01107_2.00
Cannabis sativa
DAWWWAWW

WWTWWWTH
PBM
Lambert et al.(2019)
pTH11338
0.991 0.113
SUM1
M01517_2.00
Saccharomyces cerevisiae
NNNDWAWW

WWTWHNNN
PBM
Zhu et al.(2009)
Sum1
0.991 0.000
For this family, TFs with SR scores > 0.990 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M01693_2.00 AT hook 14 26
M01693_2.00 AT hook 35 46
M01693_2.00 AT hook 61 71
M01693_2.00 AT hook 89 101
M01693_2.00 AT hook 118 130

DNA Binding Domains

Protein ID Domain From To Sequence
NCU01145.1 AT hook 14 26
NCU01145.1 AT hook 35 46
NCU01145.1 AT hook 61 71
NCU01145.1 AT hook 89 101
NCU01145.1 AT hook 118 130
NCU01145.2 AT hook 14 26
NCU01145.2 AT hook 35 46
NCU01145.2 AT hook 61 71
NCU01145.2 AT hook 89 101
NCU01145.2 AT hook 118 130

Links

Other AT hook family TFs
Other Neurospora crassa TFs

1073 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
A1O1_05801 Capronia coronata A1O1_05801 I 0.000
A1O3_03555 Capronia epimyces A1O3_03555 I 0.000
A1O5_06619 Cladophialophora psammophila A1O5_06619 I 0.000
A1O7_00849 Cladophialophora yegresii A1O7_00849 I 0.000
AB07639.1 Alternaria brassicicola AB07639.1 I 0.000
BDDG_02608 Blastomyces dermatitidis BDDG_02608 I 0.000
ACLA_026280 Aspergillus clavatus CADACLAG00002102 I 0.000
AFUA_1G09190 Aspergillus fumigatus CADAFUAG00007026 I 0.000
CADANGAG00006390 Aspergillus niger CADANGAG00006390 I 0.000
ANIA_01368 Aspergillus nidulans CADANIAG00001243 D 0.000
CPC735_034820 Coccidioides posadasii CPC735_034820 I 0.000
EURHEDRAFT_506166 Aspergillus ruber EURHEDRAFT_506166 I 0.000
G647_00903 Cladophialophora carrionii G647_00903 I 0.000
HCBG_05364 Histoplasma capsulatum HCBG_05364 I 0.000
HMPREF1120_02804 Exophiala dermatitidis HMPREF1120_02804 I 0.000
HMPREF1541_00475 Cyphellophora europaea HMPREF1541_00475 I 0.000
LEMA_P054920.1 Leptosphaeria maculans LEMA_P054920.1 I 0.000
PABG_06647 Paracoccidioides brasiliensis PABG_06647 I 0.000
Pc16g02310 Penicillium chrysogenum Pc16g02310 I 0.000
PCH_Pc16g02310 Penicillium rubens PCH_Pc16g02310 I 0.000
PDE_06784 Penicillium oxalicum PDE_06784 I 0.000
PDIP_41390 Penicillium digitatum PDIP_41390 I 0.000
PMAA_045800 Penicillium marneffei PMAA_045800 I 0.000
PMAA_045800 Talaromyces marneffei PMAA_045800 I 0.000
PV04_01175 Capronia semiimmersa PV04_01175 I 0.000
PV05_11903 Exophiala xenobiotica PV05_11903 N 0.000
PV07_02125 Cladophialophora immunda PV07_02125 I 0.000
PV08_05229 Exophiala spinifera PV08_05229 I 0.000
PVAR5_4509 Byssochlamys spectabilis PVAR5_4509 I 0.000
SETTUDRAFT_97479 Setosphaeria turcica SETTUDRAFT_97479 I 0.000
UREG_05754 Uncinocarpus reesii UREG_05754 I 0.000
Z517_07725 Fonsecaea pedrosoi Z517_07725 I 0.000
Z519_09046 Cladophialophora bantiana Z519_09046 I 0.000