LjSGA_043546.1 (Lotus japonicus)
AT hook

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02178 (AT_hook) IPR017956 LjSGA_043546.1 T018111_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AHL13
M01672_2.00
Arabidopsis thaliana
NAWWTAWWWN

NWWWTAWWTN
PBM
Weirauch et al.(2014)
pTH8202
0.991 0.846
BRADI3G55950
M01673_2.00
Brachypodium distachyon
NNNNRHDDN

NHHDYNNNN
PBM
Weirauch et al.(2014)
pTH9369
0.991 0.846
OS02G0824300
M01688_2.00
Oryza sativa
NNDWAWWN

NWWTWHNN
PBM
Weirauch et al.(2014)
pTH8406
0.991 0.846
VIT_08s0007g04020
M01689_2.00
Vitis vinifera
DBNDDDDDDN

NHHHHHHNVH
PBM
Weirauch et al.(2014)
pTH9295
0.991 0.731
FGRRES_17512
M01105_2.00
Fusarium graminearum
NNNDNWWWW

WWWWNHNNN
PBM
Lambert et al.(2019)
pTH11412
0.991 0.538
TVAG_474020
M01106_2.00
Trichomonas vaginalis
DNWWWAWW

WWTWWWNH
PBM
Lambert et al.(2019)
pTH11493
0.991 0.500
MTR_4g101990
M01687_2.00
Medicago truncatula
AAAWTAAT

ATTAWTTT
PBM
Weirauch et al.(2014)
pTH9209
0.991 0.423
SUM1
M00008_2.00
Saccharomyces cerevisiae
NNDWWWH

DWWWHNN
PBM
Badis et al.(2008)
SUM1_2124
0.991 0.423
PK00377.1
M01107_2.00
Cannabis sativa
DAWWWAWW

WWTWWWTH
PBM
Lambert et al.(2019)
pTH11338
0.991 0.423
SUM1
M07439_2.00
Saccharomyces cerevisiae
DWAAATWWN

NWWATTTWH
PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0398.1
0.991 0.423
SUM1
M08478_2.00
Saccharomyces cerevisiae
RYGWCASWAAW

WTTWSTGWCRY
Misc
DeBoer et al.(2011)
YDR310C_383
0.991 0.423
SUM1
M08479_2.00
Saccharomyces cerevisiae
DWAAATWWN

NWWATTTWH
Misc
DeBoer et al.(2011)
YDR310C_478
0.991 0.423
HMGA1
M09769_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HMGIY_01
0.991 0.410
HMGA1
M09770_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HMGIY_Q4
0.991 0.410
ENSPPYG00000004736
M01685_2.00
Pongo abelii
NNNNDWWW

WWWHNNNN
PBM
Weirauch et al.(2014)
pTH9279
0.991 0.395
Hmga2
M00751_2.00
Mus musculus
NNNNRHWWNN

NNWWDYNNNN
PBM
Weirauch et al.(2013)
pTH3046
0.991 0.385
Q7DLU9_PEA
M09772_2.00
Pisum sativum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$HMGIY_01
0.991 0.385
HMGA2
M09771_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HMGA2_01
0.991 0.385
ANIA_01690
M01675_2.00
Aspergillus nidulans
NNNNRHDDN

NHHDYNNNN
PBM
Weirauch et al.(2014)
pTH8216
0.991 0.351
BRADI5G22430
M01674_2.00
Brachypodium distachyon
VNRDDDHDD

HHDHHHYNB
PBM
Weirauch et al.(2014)
pTH9242
0.991 0.346
NCU05635
M01694_2.00
Neurospora crassa
NNNWWWWNNN

NNNWWWWNNN
PBM
Weirauch et al.(2014)
pTH8863
0.991 0.316
phf21ab
M01678_2.00
Danio rerio
NNNDNADW

WHTNHNNN
PBM
Weirauch et al.(2014)
pTH9254
0.991 0.308
phf21ab
M01680_2.00
Gasterosteus aculeatus
AAAAWAAA

TTTWTTTT
PBM
Weirauch et al.(2014)
pTH9180
0.991 0.308
Setbp1
M01683_2.00
Mus musculus
NDNNNNNNHN

NDNNNNNNHN
PBM
Weirauch et al.(2014)
pTH1294
0.991 0.308
Ahctf1
M00750_2.00
Mus musculus
AAAWAWAW

ATWTWTTT
PBM
Weirauch et al.(2013)
pTH2361
0.991 0.308
Xrp1
M01686_2.00
Drosophila melanogaster
NNNNDWAWW

WWTWHNNNN
PBM
Weirauch et al.(2014)
pTH9260
0.991 0.308
FGRRES_05233
M01104_2.00
Fusarium graminearum
NNNDWWAWWH

DWWTWWHNNN
PBM
Lambert et al.(2019)
pTH11377
0.991 0.308
PK26376.1
M01108_2.00
Cannabis sativa
DDWWWAWW

WWTWWWHH
PBM
Lambert et al.(2019)
pTH11261
0.991 0.308
Xrp1
M05900_2.00
Drosophila melanogaster
RTKRYGYAAT

ATTRCRYMAY
B1H
Zhu et al.(2011)
Xrp1_CG6272_SANGER_5_FBgn0261113
0.991 0.308
ATEG_07399
M01676_2.00
Aspergillus terreus
DHNNHNDWWW

WWWHNDNNDH
PBM
Weirauch et al.(2014)
pTH9237
0.991 0.269
ENSACAG00000014978
M01677_2.00
Anolis carolinensis
NNNNNDRH

DYHNNNNN
PBM
Weirauch et al.(2014)
pTH9222
0.991 0.269
kmt2cb
M01679_2.00
Danio rerio
WWAWAWAT

ATWTWTWW
PBM
Weirauch et al.(2014)
pTH7876
0.991 0.269
PHF21A
M01681_2.00
Meleagris gallopavo
HDNHNNDNHD

HDNHNNDNHD
PBM
Weirauch et al.(2014)
pTH7875
0.991 0.269
PHF21A
M01103_2.00
Monodelphis domestica
NNNAWATWAATN

NATTWATWTNNN
PBM
Lambert et al.(2019)
pTH9309
0.991 0.269
PHF21A
M01682_2.00
Monodelphis domestica
NNNNNHRH

DYDNNNNN
PBM
Weirauch et al.(2014)
pTH9335
0.991 0.269
Phf21a
M01684_2.00
Mus musculus
NNNATATWAATN

NATTWATATNNN
PBM
Weirauch et al.(2014)
pTH8550
0.991 0.269
athp-3
M01691_2.00
Caenorhabditis elegans
NNDDWDH

DHWHHNN
PBM
Weirauch et al.(2014)
pTH9097
0.991 0.242
estExt_fgeneshNG_pg.C_820014
M01692_2.00
Naegleria gruberi
NNNNNDRH

DYHNNNNN
PBM
Weirauch et al.(2014)
pTH9380
0.991 0.231
HMGA
M01671_2.00
Arabidopsis thaliana
NNNNDWAWH

DWTWHNNNN
PBM
Weirauch et al.(2014)
pTH7395
0.991 0.212
HMG-I Y
M02652_2.00
Pisum sativum
NDWVAAANRVMRWMAY

RTKWYKBYNTTTBWHN
SELEX
Mathelier et al.(2014)
MA0045.1
0.991 0.212
NCU01145
M01693_2.00
Neurospora crassa
RWATAWWTNN

NNAWWTATWY
PBM
Weirauch et al.(2014)
pTH8916
0.991 0.210
hmg-12
M01690_2.00
Caenorhabditis elegans
NNAWWTAWWTNN

NNAWWTAWWTNN
PBM
Weirauch et al.(2014)
pTH8997
0.991 0.148
SUM1
M01517_2.00
Saccharomyces cerevisiae
NNNDWAWW

WWTWHNNN
PBM
Zhu et al.(2009)
Sum1
0.991 0.000
For this family, TFs with SR scores > 0.990 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
LjSGA_043546.1 AT hook 93 105
LjSGA_043546.1 AT hook 134 146

Links

Other AT hook family TFs
Other Lotus japonicus TFs

1072 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Aan_R009070 Calypte anna Aan_R009070 I 0.000
Alligator_sinensis_CCG012315.1 Alligator sinensis Alligator_sinensis_CCG012315.1 I 0.000
ANCCAN_02634 Ancylostoma caninum ANCCAN_02634 I 0.000
ANCCEY_06558 Ancylostoma ceylanicum ANCCEY_06558 I 0.000
BGIBMGA001211 Bombyx mori BGIBMGA001211 I 0.000
Cmyd_10008393 Chelonia mydas Cmyd_10008393 I 0.000
D918_03166 Trichuris suis D918_03166 N 0.000
DICVIV_05621 Dictyocaulus viviparus DICVIV_05621 I 0.000
ENSAMEG00000005129 Ailuropoda melanoleuca ENSAMEG00000005129 I 0.000
ENSAMXG00000009016 Astyanax mexicanus ENSAMXG00000009016 I 0.000
SREBF1 Bos taurus ENSBTAG00000007884 I 0.000
SREBF1 Canis familiaris ENSCAFG00000018436 I 0.000
SREBF1 Callithrix jacchus ENSCJAG00000008953 I 0.000
SREBF1 Cavia porcellus ENSCPOG00000002439 I 0.000
ENSCSAG00000008412 Chlorocebus sabaeus ENSCSAG00000008412 I 0.000
srebf1 Danio rerio ENSDARG00000067607 I 0.000
Srebf1 Dipodomys ordii ENSDORG00000012333 I 0.000
SREBF1 Equus caballus ENSECAG00000019802 I 0.000
SREBF1 Echinops telfairi ENSETEG00000004179 I 0.000
ENSFALG00000013762 Ficedula albicollis ENSFALG00000013762 I 0.000
SREBF1 Felis catus ENSFCAG00000001983 I 0.000
SREBF1 Homo sapiens ENSG00000072310 D 0.000
srebf1 Gasterosteus aculeatus ENSGACG00000012064 I 0.000
SREBF1 Gallus gallus ENSGALG00000027188 I 0.000
SREBF1 Gorilla gorilla ENSGGOG00000002713 I 0.000
ENSLACG00000013149 Latimeria chalumnae ENSLACG00000013149 I 0.000
SREBF1 Loxodonta africana ENSLAFG00000021644 I 0.000
ENSLOCG00000008766 Lepisosteus oculatus ENSLOCG00000008766 I 0.000
ENSMEUG00000001306 Macropus eugenii ENSMEUG00000001306 I 0.000
SREBF1 Microcebus murinus ENSMICG00000012535 I 0.000
SREBF1 Macaca mulatta ENSMMUG00000023375 I 0.000
SREBF1 Monodelphis domestica ENSMODG00000014074 I 0.000
ENSMPUG00000000024 Mustela putorius furo ENSMPUG00000000024 I 0.000
Srebf1 Mus musculus ENSMUSG00000020538 D 0.000
ENSNLEG00000013625 Nomascus leucogenys ENSNLEG00000013625 I 0.000
SREBF1 Ornithorhynchus anatinus ENSOANG00000012278 I 0.000
ENSOARG00000001504 Ovis aries ENSOARG00000001504 I 0.000
SREBF1 Otolemur garnettii ENSOGAG00000002910 I 0.000
ENSONIG00000002304 Oreochromis niloticus ENSONIG00000002304 I 0.000
SREBF1 Ochotona princeps ENSOPRG00000015069 I 0.000
srebf1 Oryzias latipes ENSORLG00000009437 I 0.000
ENSP00000348069 Macaca fascicularis ENSP00000348069 I 0.000
ENSPANG00000023675 Papio anubis ENSPANG00000023675 I 0.000
SREBF1 Procavia capensis ENSPCAG00000014903 I 0.000
ENSPFOG00000010306 Poecilia formosa ENSPFOG00000010306 I 0.000
ENSPMAG00000001400 Petromyzon marinus ENSPMAG00000001400 I 0.000
ENSPPYG00000008037 Pongo abelii ENSPPYG00000008037 I 0.000
ENSPSIG00000005996 Pelodiscus sinensis ENSPSIG00000005996 I 0.000
SREBF1 Pteropus vampyrus ENSPVAG00000005765 I 0.000
Srebf1 Rattus norvegicus ENSRNOG00000003463 I 0.000
ENSSHAG00000018607 Sarcophilus harrisii ENSSHAG00000018607 I 0.000
ENSSSCG00000023124 Sus scrofa ENSSSCG00000023124 I 0.000
ENSSTOG00000014939 Ictidomys tridecemlineatus ENSSTOG00000014939 I 0.000
SREBF1 Taeniopygia guttata ENSTGUG00000007313 I 0.000
srebf1 Tetraodon nigroviridis ENSTNIG00000011957 I 0.000
ENSXMAG00000014774 Xiphophorus maculatus ENSXMAG00000014774 I 0.000
Gfo_R006283 Geospiza fortis Gfo_R006283 I 0.000
HCOI01299300 Haemonchus contortus HCOI01299300 I 0.000
HCOI02041100 Haemonchus contortus HCOI02041100 I 0.000
HelroG66987 Helobdella robusta HelroG66987 I 0.000
L596_g18997 Steinernema carpocapsae L596_g18997 I 0.000
L889_g16826 Steinernema feltiae L889_g16826 I 0.000
L893_g8503 Steinernema glaseri L893_g8503 I 0.000
L898_g465 Steinernema monticolum L898_g465 I 0.000
Myotis_brandtii_SREBF1_10023215 Myotis brandtii Myotis_brandtii_SREBF1_10023215 I 0.000
NBR_0002173001 Nippostrongylus brasiliensis NBR_0002173001 I 0.000
NECAME_14255 Necator americanus NECAME_14255 I 0.000
Ogr11708 Ophisaurus gracilis Ogr11708 I 0.000
Pvit_05020 Pogona vitticeps Pvit_05020 I 0.000
TELCIR_06021 Teladorsagia circumcincta TELCIR_06021 I 0.000
TELCIR_07862 Teladorsagia circumcincta TELCIR_07862 I 0.000
tetur08g03870 Tetranychus urticae tetur08g03870 I 0.000
TTRE_0000754701 Trichuris trichiura TTRE_0000754701 N 0.000
srebf1 Xenopus tropicalis XB-GENE-987572 I 0.000
XP_002944649 Xenopus tropicalis XP_002944649 I 0.000