REM19 (Arabidopsis thaliana)
B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02362 (B3) IPR003340 AT1G49480 T018398_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
Required for vernalization. Essential for the complete repression of FLC in vernalized plants. Required for the methylation of histone H3

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
REM19
M06702_2.00
Arabidopsis thaliana
TKWTTTTTTTTTKKY

RMMAAAAAAAAAWMA
Dap-seq
OMalley et al.(2016)
REM19_col_a
(Direct) (Direct)
REM19
M06703_2.00
Arabidopsis thaliana
NWBTTTTTTTTTTTTKKHHWH

DWDDMMAAAAAAAAAAAAVWN
Dap-seq
OMalley et al.(2016)
REM19_colamp_a
(Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AT1G49480.1 B3 129 223
AT1G49480.2 B3 129 223
AT1G49480.3 B3 129 223

Links

Other B3 family TFs
Other Arabidopsis thaliana TFs

13 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Bo5g076230 Brassica oleracea Bo5g076230 I 0.968
Bo8g011550 Brassica oleracea Bo8g011550 I 0.874
Bostr.26675s0223 Boechera stricta Bostr.26675s0223 I 0.979
Bra014192 Brassica rapa Bra014192 I 0.894
Bra032286 Brassica rapa Bra032286 I 0.968
Cagra.4084s0003 Capsella grandiflora Cagra.4084s0003 I 0.979
Carubv10010224m.g Capsella rubella Carubv10010224m.g I 0.979
GLYMA07G21160 Glycine max GLYMA07G21160 I 0.729
Gorai.013G039800 Gossypium raimondii Gorai.013G039800 I 0.737
RTV1 Arabidopsis lyrata scaffold_104641.1 I 0.979
SapurV1A.0979s0040 Salix purpurea SapurV1A.0979s0040 I 0.779
Thhalv10012062m.g Eutrema salsugineum Thhalv10012062m.g I 0.979