POPTR_0005s16320 (Populus trichocarpa)
B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02362 (B3) IPR003340 POPTR_0005s16320 T020858_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ARF16
M06708_2.00
Arabidopsis thaliana
TTTACGKTTTTGGCGGRAAAA

TTTTYCCGCCAAAAMCGTAAA
Dap-seq
OMalley et al.(2016)
ARF16_col_b
0.722 0.722
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0005s16320.1 B3 126 228

Links

Other B3 family TFs
Other Populus trichocarpa TFs

190 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ARF16 Arabidopsis thaliana AT4G30080 D 0.722
Eucgr.G02838 Eucalyptus grandis Eucgr.G02838 I 0.711
mgf024607m Mimulus guttatus mgf024607m I 0.711
mgf005300m Mimulus guttatus mgf005300m I 0.701
mgf000336m Mimulus guttatus mgf000336m I 0.711
Cucsa.381330 Cucumis sativus Cucsa.381330 I 0.773
Cucsa.137650 Cucumis sativus Cucsa.137650 I 0.722
Cucsa.124410 Cucumis sativus Cucsa.124410 I 0.701
cassava852.valid.m1 Manihot esculenta cassava852.valid.m1 I 0.701
cassava5984.valid.m1 Manihot esculenta cassava5984.valid.m1 I 0.701
cassava37879.valid.m1 Manihot esculenta cassava37879.valid.m1 I 0.711
Aquca_030_00152 Aquilegia coerulea Aquca_030_00152 I 0.711
Bostr.27991s0089 Boechera stricta Bostr.27991s0089 I 0.729
Eucgr.F04380 Eucalyptus grandis Eucgr.F04380 I 0.776
Ciclev10030860m.g Citrus clementina Ciclev10030860m.g I 0.711
Ciclev10011194m.g Citrus clementina Ciclev10011194m.g I 0.701
Ciclev10000693m.g Citrus clementina Ciclev10000693m.g I 0.835
Carubv10022755m.g Capsella rubella Carubv10022755m.g I 0.729
Carubv10004220m.g Capsella rubella Carubv10004220m.g I 0.722
Cagra.1876s0007 Capsella grandiflora Cagra.1876s0007 I 0.729
Cagra.1744s0020 Capsella grandiflora Cagra.1744s0020 I 0.722
Bostr.7867s0859 Boechera stricta Bostr.7867s0859 I 0.722
cassava36161.valid.m1 Manihot esculenta cassava36161.valid.m1 I 0.959
cassava23558.valid.m1 Manihot esculenta cassava23558.valid.m1 I 0.701
Ca_26121 Cicer arietinum Ca_26121 I 0.732
Ca_02541 Cicer arietinum Ca_02541 I 0.719
VIT_08s0040g01810 Vitis vinifera VIT_08s0040g01810 I 0.701
ARF10 Vitis vinifera VIT_06s0004g02750 I 0.701
TCM_043157 Theobroma cacao TCM_043157 I 0.711
TCM_042067 Theobroma cacao TCM_042067 I 0.701
TCM_035002 Theobroma cacao TCM_035002 I 0.876
TCM_022163 Theobroma cacao TCM_022163 I 0.711
Solyc11g069500.1 Solanum lycopersicum Solyc11g069500.1 I 0.732
Cla013979 Citrullus lanatus Cla013979 I 0.711
Cla018574 Citrullus lanatus Cla018574 I 0.701
30078.m002329 Ricinus communis 30078.m002329 I 0.711
29908.m005953 Ricinus communis 29908.m005953 I 0.938
27538.m000327 Ricinus communis 27538.m000327 I 0.701
27494.m000045 Ricinus communis 27494.m000045 I 0.701
Pm031275 Prunus mume Pm031275 I 0.701
Pm030120 Prunus mume Pm030120 I 0.701
Pm019126 Prunus mume Pm019126 I 0.866
Pm018533 Prunus mume Pm018533 I 0.701
Cla022413 Citrullus lanatus Cla022413 I 0.784
Solyc10g086130.1 Solanum lycopersicum Solyc10g086130.1 I 0.722
Eucgr.J00923 Eucalyptus grandis Eucgr.J00923 I 0.701
PDK_20s1359671g001 Phoenix dactylifera PDK_20s1359671g001 I 0.737
SapurV1A.0010s0540 Salix purpurea SapurV1A.0010s0540 I 0.948
Pavir.J37640 Panicum virgatum Pavir.J37640 I 0.711
Pavir.J26437 Panicum virgatum Pavir.J26437 I 0.711
Pavir.J24081 Panicum virgatum Pavir.J24081 I 0.708
Pavir.J03524 Panicum virgatum Pavir.J03524 I 0.701
Pavir.Gb00635 Panicum virgatum Pavir.Gb00635 I 0.708
Pavir.Da00107 Panicum virgatum Pavir.Da00107 I 0.722
orange1.1g008078m.g Citrus sinensis orange1.1g008078m.g I 0.835
orange1.1g005482m.g Citrus sinensis orange1.1g005482m.g I 0.711
SapurV1A.0141s0090 Salix purpurea SapurV1A.0141s0090 I 0.742
SapurV1A.0216s0160 Salix purpurea SapurV1A.0216s0160 I 0.701
chr3.LjT10E18.60.nc Lotus japonicus chr3.LjT10E18.60.nc I 0.722
chr1.LjT31L11.90.nd Lotus japonicus chr1.LjT31L11.90.nd I 0.835
PK17007.1 Cannabis sativa PK17007.1 I 0.701
Thhalv10024601m.g Eutrema salsugineum Thhalv10024601m.g I 0.722
Thhalv10016329m.g Eutrema salsugineum Thhalv10016329m.g I 0.729
SapurV1A.0986s0010 Salix purpurea SapurV1A.0986s0010 I 0.732
SapurV1A.0657s0050 Salix purpurea SapurV1A.0657s0050 I 0.701
SapurV1A.0518s0120 Salix purpurea SapurV1A.0518s0120 I 0.701
SapurV1A.0331s0130 Salix purpurea SapurV1A.0331s0130 I 1.000
orange1.1g005075m.g Citrus sinensis orange1.1g005075m.g I 0.701
MDP0000256621 Malus domestica MDP0000256621 I 0.876
Gorai.009G241900 Gossypium raimondii Gorai.009G241900 I 0.825
Gorai.009G107800 Gossypium raimondii Gorai.009G107800 I 0.711
Gorai.006G166400 Gossypium raimondii Gorai.006G166400 I 0.711
gene23280-v1.0-hybrid Fragaria vesca gene23280-v1.0-hybrid I 0.711
gene09733-v1.0-hybrid Fragaria vesca gene09733-v1.0-hybrid I 0.701
gene02234-v1.0-hybrid Fragaria vesca gene02234-v1.0-hybrid I 0.847
evm.TU.supercontig_65.4 Carica papaya evm.TU.supercontig_65.4 I 0.711
evm.TU.supercontig_53.88 Carica papaya evm.TU.supercontig_53.88 I 0.711
evm.TU.supercontig_49.122 Carica papaya evm.TU.supercontig_49.122 I 0.887
Gorai.010G046000 Gossypium raimondii Gorai.010G046000 I 0.866
Gorai.011G238900 Gossypium raimondii Gorai.011G238900 I 0.701
MDP0000221322 Malus domestica MDP0000221322 I 0.701
MDP0000131481 Malus domestica MDP0000131481 I 0.701
Lus10040403.g Linum usitatissimum Lus10040403.g I 0.701
Lus10026510.g Linum usitatissimum Lus10026510.g I 0.701
Lus10023519.g Linum usitatissimum Lus10023519.g I 0.701
Lus10021467.g Linum usitatissimum Lus10021467.g I 0.708
Lus10019940.g Linum usitatissimum Lus10019940.g I 0.701
Gorai.013G267100 Gossypium raimondii Gorai.013G267100 I 0.711
Gorai.012G004800 Gossypium raimondii Gorai.012G004800 I 0.701
Eucgr.K01240 Eucalyptus grandis Eucgr.K01240 I 0.701
OLONG_021130 Oryza longistaminata OLONG_021130 I 0.711
MTR_1g094960 Medicago truncatula MTR_1g094960 I 0.711
MLOC_64795 Hordeum vulgare MLOC_64795 I 0.711
LPERR10G09970 Leersia perrieri LPERR10G09970 I 0.711
LPERR06G21020 Leersia perrieri LPERR06G21020 I 0.701
LPERR04G15300 Leersia perrieri LPERR04G15300 I 0.711
GSMUA_Achr9G29480_001 Musa acuminata GSMUA_Achr9G29480_001 I 0.784
GSMUA_Achr8G18930_001 Musa acuminata GSMUA_Achr8G18930_001 I 0.701
GSMUA_Achr4G18240_001 Musa acuminata GSMUA_Achr4G18240_001 I 0.701
MTR_2g094570 Medicago truncatula MTR_2g094570 I 0.732
MTR_4g058930 Medicago truncatula MTR_4g058930 I 0.732
OB02G32150 Oryza brachyantha OB02G32150 I 0.708
OGLUM10G13220 Oryza glumaepatula OGLUM10G13220 I 0.711
OGLUM06G26560 Oryza glumaepatula OGLUM06G26560 I 0.711
OGLUM01G18360 Oryza glumaepatula OGLUM01G18360 I 0.701
OBART10G13410 Oryza barthii OBART10G13410 I 0.711
OBART06G25230 Oryza barthii OBART06G25230 I 0.711
OBART04G18910 Oryza barthii OBART04G18910 I 0.701
OB10G20590 Oryza brachyantha OB10G20590 I 0.711
OB06G32920 Oryza brachyantha OB06G32920 I 0.711
GSMUA_Achr11G22870_001 Musa acuminata GSMUA_Achr11G22870_001 I 0.711
GRMZM2G159399 Zea mays GRMZM2G159399 I 0.701
GRMZM2G153233 Zea mays GRMZM2G153233 I 0.701
Bra024109 Brassica rapa Bra024109 I 0.711
Bra011955 Brassica rapa Bra011955 I 0.729
Bra011162 Brassica rapa Bra011162 I 0.722
Bo7g114200 Brassica oleracea Bo7g114200 I 0.722
Bo4g071620 Brassica oleracea Bo4g071620 I 0.740
Bo1g014600 Brassica oleracea Bo1g014600 I 0.722
BGIOSGA033142 Oryza indica BGIOSGA033142 I 0.711
ARF10 Oryza indica BGIOSGA016767 I 0.701
BRADI1G33160 Brachypodium distachyon BRADI1G33160 I 0.711
BRADI3G28950 Brachypodium distachyon BRADI3G28950 I 0.711
BRADI3G49320 Brachypodium distachyon BRADI3G49320 I 0.708
GLYMA13G40030 Glycine max GLYMA13G40030 I 0.711
GLYMA12G29720 Glycine max GLYMA12G29720 I 0.711
GLYMA12G08110 Glycine max GLYMA12G08110 I 0.722
AC207656.3_FG002 Zea mays AC207656.3_FG002 I 0.711
GLYMA11G20490 Glycine max GLYMA11G20490 I 0.722
GLYMA10G35481 Glycine max GLYMA10G35481 I 0.701
ARF10 Arabidopsis lyrata fgenesh2_kg.4__731__AT2G28350.1 I 0.729
F775_32978 Aegilops tauschii F775_32978 I 0.708
ARF10 Arabidopsis thaliana AT2G28350 I 0.729
Sb10g027790 Sorghum bicolor Sb10g027790 I 0.711
POPTR_0004s22130 Populus trichocarpa POPTR_0004s22130 I 0.711
POPTR_0002s09050 Populus trichocarpa POPTR_0002s09050 I 0.969
ARF16 Arabidopsis lyrata scaffold_701217.1 I 0.722
PGSC0003DMG400021560 Solanum tuberosum PGSC0003DMG400021560 I 0.701
PGSC0003DMG400008081 Solanum tuberosum PGSC0003DMG400008081 I 0.719
ARF22 Oryza sativa OS10G0479900 I 0.711
Si009541m.g Setaria italica Si009541m.g I 0.701
ARF18 Oryza sativa OS06G0685700 I 0.711
POPTR_0006s12930 Populus trichocarpa POPTR_0006s12930 I 0.742
POPTR_0008s03890 Populus trichocarpa POPTR_0008s03890 I 0.711
Si005991m.g Setaria italica Si005991m.g I 0.711
Sb01g019130 Sorghum bicolor Sb01g019130 I 0.711
PRUPE_ppa003136mg Prunus persica PRUPE_ppa003136mg I 0.907
PRUPE_ppa002710mg Prunus persica PRUPE_ppa002710mg I 0.711
PRUPE_ppa002195mg Prunus persica PRUPE_ppa002195mg I 0.701
POPTR_0848s00200 Populus trichocarpa POPTR_0848s00200 I 0.711
POPTR_0016s09150 Populus trichocarpa POPTR_0016s09150 I 0.732
POPTR_0010s23000 Populus trichocarpa POPTR_0010s23000 I 0.711
OS04G0519700 Oryza sativa OS04G0519700 I 0.701
ORUFI10G14150 Oryza rufipogon ORUFI10G14150 I 0.711
ONIVA10G14700 Oryza nivara ONIVA10G14700 I 0.711
Solyc09g007810.2 Solanum lycopersicum Solyc09g007810.2 I 0.701
ONIVA06G31350 Oryza nivara ONIVA06G31350 I 0.701
ONIVA06G28270 Oryza nivara ONIVA06G28270 I 0.711
OPUNC04G16630 Oryza punctata OPUNC04G16630 I 0.701
OMERI10G10210 Oryza meridionalis OMERI10G10210 I 0.711
OMERI06G25370 Oryza meridionalis OMERI06G25370 I 0.711
OMERI04G15770 Oryza meridionalis OMERI04G15770 I 0.701
OPUNC10G11840 Oryza punctata OPUNC10G11840 I 0.711
OPUNC06G22960 Oryza punctata OPUNC06G22960 I 0.711
Si034525m.g Setaria italica Si034525m.g I 0.711
ORUFI06G27120 Oryza rufipogon ORUFI06G27120 I 0.711
ORGLA10G0115500 Oryza glaberrima ORGLA10G0115500 I 0.711
ORGLA06G0209500 Oryza glaberrima ORGLA06G0209500 I 0.711
ORGLA04G0160200 Oryza glaberrima ORGLA04G0160200 I 0.701
Solyc11g013480.1 Solanum lycopersicum Solyc11g013480.1 N 0.704
MDP0000232116 Malus domestica MDP0000232116 N 0.776
Thhalv10018331m.g Eutrema salsugineum Thhalv10018331m.g N 0.773
Bra015651 Brassica rapa Bra015651 N 0.753
Bra003665 Brassica rapa Bra003665 N 0.794
Bo6g081980 Brassica oleracea Bo6g081980 N 0.794
Bo6g121520 Brassica oleracea Bo6g121520 N 0.753
ARF17 Arabidopsis thaliana AT1G77850 N 0.804
ARF17 Arabidopsis lyrata scaffold_202748.1 N 0.784
GLYMA04G43350 Glycine max GLYMA04G43350 N 0.724
Cagra.0096s0050 Capsella grandiflora Cagra.0096s0050 N 0.833
Bostr.20129s0222 Boechera stricta Bostr.20129s0222 N 0.804
MTR_3g073420 Medicago truncatula MTR_3g073420 N 0.786
gene16050-v1.0-hybrid Fragaria vesca gene16050-v1.0-hybrid N 0.804
Carubv10019991m.g Capsella rubella Carubv10019991m.g N 0.833
Lus10009770.g Linum usitatissimum Lus10009770.g N 0.835
Lus10024753.g Linum usitatissimum Lus10024753.g N 0.835
Lus10024754.g Linum usitatissimum Lus10024754.g N 0.835
PGSC0003DMG400027798 Solanum tuberosum PGSC0003DMG400027798 N 0.704
GLYMA13G02410 Glycine max GLYMA13G02410 N 0.704
Cagra.24523s0002 Capsella grandiflora Cagra.24523s0002 N 0.780