Cla013979 (Citrullus lanatus)
B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02362 (B3) IPR003340 Cla013979 T022008_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ARF16
M06708_2.00
Arabidopsis thaliana
TTTACGKTTTTGGCGGRAAAA

TTTTYCCGCCAAAAMCGTAAA
Dap-seq
OMalley et al.(2016)
ARF16_col_b
0.918 0.918
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cla013979 B3 118 220

Links

Other B3 family TFs
Other Citrullus lanatus TFs

217 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
27494.m000045 Ricinus communis 27494.m000045 I 0.876
27538.m000327 Ricinus communis 27538.m000327 I 0.907
29908.m005953 Ricinus communis 29908.m005953 I 0.711
30078.m002329 Ricinus communis 30078.m002329 I 0.928
AC207656.3_FG002 Zea mays AC207656.3_FG002 I 0.887
AMTR_s00148p00046020 Amborella trichopoda AMTR_s00148p00046020 I 0.814
AMTR_s00155p00082980 Amborella trichopoda AMTR_s00155p00082980 I 0.866
Aquca_030_00152 Aquilegia coerulea Aquca_030_00152 I 0.907
ARF10 Arabidopsis thaliana AT2G28350 I 0.866
ARF16 Arabidopsis thaliana AT4G30080 D 0.918
BGIOSGA008657 Oryza indica BGIOSGA008657 I 0.825
ARF10 Oryza indica BGIOSGA016767 I 0.784
BGIOSGA033142 Oryza indica BGIOSGA033142 I 0.856
Bo1g014600 Brassica oleracea Bo1g014600 I 0.918
Bo4g071620 Brassica oleracea Bo4g071620 I 0.845
Bo7g114200 Brassica oleracea Bo7g114200 I 0.907
Bostr.27991s0089 Boechera stricta Bostr.27991s0089 I 0.856
Bostr.7867s0859 Boechera stricta Bostr.7867s0859 I 0.918
Bra011162 Brassica rapa Bra011162 I 0.928
Bra011955 Brassica rapa Bra011955 I 0.856
Bra024109 Brassica rapa Bra024109 I 0.897
BRADI1G33160 Brachypodium distachyon BRADI1G33160 I 0.887
BRADI3G28950 Brachypodium distachyon BRADI3G28950 I 0.876
BRADI3G49320 Brachypodium distachyon BRADI3G49320 I 0.844
BRADI5G15904 Brachypodium distachyon BRADI5G15904 I 0.710
Cagra.1744s0020 Capsella grandiflora Cagra.1744s0020 I 0.918
Cagra.1876s0007 Capsella grandiflora Cagra.1876s0007 I 0.856
Carubv10004220m.g Capsella rubella Carubv10004220m.g I 0.918
Carubv10022755m.g Capsella rubella Carubv10022755m.g I 0.856
cassava23558.valid.m1 Manihot esculenta cassava23558.valid.m1 I 0.918
cassava36161.valid.m1 Manihot esculenta cassava36161.valid.m1 I 0.711
cassava37879.valid.m1 Manihot esculenta cassava37879.valid.m1 I 0.938
cassava5984.valid.m1 Manihot esculenta cassava5984.valid.m1 I 0.887
cassava852.valid.m1 Manihot esculenta cassava852.valid.m1 I 0.897
Ca_02541 Cicer arietinum Ca_02541 I 0.896
Ca_08488 Cicer arietinum Ca_08488 I 0.804
Ca_17136 Cicer arietinum Ca_17136 I 0.876
Ca_17624 Cicer arietinum Ca_17624 I 0.732
Ca_26121 Cicer arietinum Ca_26121 I 0.897
chr3.LjT10E18.60.nc Lotus japonicus chr3.LjT10E18.60.nc I 0.907
Ciclev10011194m.g Citrus clementina Ciclev10011194m.g I 0.918
Ciclev10027901m.g Citrus clementina Ciclev10027901m.g I 0.835
Ciclev10030860m.g Citrus clementina Ciclev10030860m.g I 0.948
Cla008883 Citrullus lanatus Cla008883 I 0.825
Cla018574 Citrullus lanatus Cla018574 I 0.918
Cla022413 Citrullus lanatus Cla022413 I 0.732
Cucsa.124410 Cucumis sativus Cucsa.124410 I 0.918
Cucsa.137650 Cucumis sativus Cucsa.137650 I 0.969
Cucsa.381330 Cucumis sativus Cucsa.381330 I 0.701
Cucsa.386060 Cucumis sativus Cucsa.386060 I 0.825
estExt_fgenesh1_pm.C_3390006 Physcomitrella patens estExt_fgenesh1_pm.C_3390006 I 0.835
Eucgr.G02838 Eucalyptus grandis Eucgr.G02838 I 0.928
Eucgr.J00923 Eucalyptus grandis Eucgr.J00923 I 0.907
Eucgr.K01240 Eucalyptus grandis Eucgr.K01240 I 0.918
evm.TU.supercontig_49.122 Carica papaya evm.TU.supercontig_49.122 I 0.711
evm.TU.supercontig_53.88 Carica papaya evm.TU.supercontig_53.88 I 0.918
evm.TU.supercontig_65.4 Carica papaya evm.TU.supercontig_65.4 I 0.887
e_gw1.279.55.1 Physcomitrella patens e_gw1.279.55.1 I 0.825
F775_32978 Aegilops tauschii F775_32978 I 0.866
ARF10 Arabidopsis lyrata fgenesh2_kg.4__731__AT2G28350.1 I 0.856
gene09733-v1.0-hybrid Fragaria vesca gene09733-v1.0-hybrid I 0.918
gene16844-v1.0-hybrid Fragaria vesca gene16844-v1.0-hybrid I 0.887
gene23280-v1.0-hybrid Fragaria vesca gene23280-v1.0-hybrid I 0.907
GLYMA10G06080 Glycine max GLYMA10G06080 I 0.918
GLYMA10G35481 Glycine max GLYMA10G35481 I 0.907
GLYMA11G20490 Glycine max GLYMA11G20490 I 0.887
GLYMA12G08110 Glycine max GLYMA12G08110 I 0.887
GLYMA12G29720 Glycine max GLYMA12G29720 I 0.918
GLYMA13G20382 Glycine max GLYMA13G20382 I 0.907
GLYMA13G40030 Glycine max GLYMA13G40030 I 0.907
GLYMA19G36571 Glycine max GLYMA19G36571 I 0.876
GLYMA20G32040 Glycine max GLYMA20G32040 I 0.897
Gorai.003G142500 Gossypium raimondii Gorai.003G142500 I 0.845
Gorai.006G166400 Gossypium raimondii Gorai.006G166400 I 0.928
Gorai.009G107800 Gossypium raimondii Gorai.009G107800 I 0.876
Gorai.009G241900 Gossypium raimondii Gorai.009G241900 I 0.701
Gorai.010G046000 Gossypium raimondii Gorai.010G046000 I 0.701
Gorai.011G238900 Gossypium raimondii Gorai.011G238900 I 0.856
Gorai.012G004800 Gossypium raimondii Gorai.012G004800 I 0.907
Gorai.013G267100 Gossypium raimondii Gorai.013G267100 I 0.835
GRMZM2G081406 Zea mays GRMZM2G081406 I 0.844
GRMZM2G153233 Zea mays GRMZM2G153233 I 0.866
GRMZM2G159399 Zea mays GRMZM2G159399 I 0.866
GRMZM2G390641 Zea mays GRMZM2G390641 I 0.814
GSMUA_Achr11G22870_001 Musa acuminata GSMUA_Achr11G22870_001 I 0.897
GSMUA_Achr4G18240_001 Musa acuminata GSMUA_Achr4G18240_001 I 0.918
GSMUA_Achr8G18930_001 Musa acuminata GSMUA_Achr8G18930_001 I 0.918
LjSGA_045968.2 Lotus japonicus LjSGA_045968.2 I 0.812
LPERR02G20290 Leersia perrieri LPERR02G20290 I 0.825
LPERR04G15300 Leersia perrieri LPERR04G15300 I 0.814
LPERR06G21020 Leersia perrieri LPERR06G21020 I 0.825
LPERR10G09970 Leersia perrieri LPERR10G09970 I 0.866
Lus10016091.g Linum usitatissimum Lus10016091.g I 0.845
Lus10019940.g Linum usitatissimum Lus10019940.g I 0.907
Lus10021467.g Linum usitatissimum Lus10021467.g I 0.856
Lus10023519.g Linum usitatissimum Lus10023519.g I 0.835
Lus10026510.g Linum usitatissimum Lus10026510.g I 0.907
Lus10040403.g Linum usitatissimum Lus10040403.g I 0.835
MDP0000131481 Malus domestica MDP0000131481 I 0.907
MDP0000221322 Malus domestica MDP0000221322 I 0.907
MDP0000750392 Malus domestica MDP0000750392 I 0.897
mgf000336m Mimulus guttatus mgf000336m I 0.825
mgf005300m Mimulus guttatus mgf005300m I 0.907
mgf016139m Mimulus guttatus mgf016139m I 0.865
mgf024607m Mimulus guttatus mgf024607m I 0.918
MLOC_64795 Hordeum vulgare MLOC_64795 I 0.876
MLOC_77438 Hordeum vulgare MLOC_77438 I 0.833
MTR_0041s0110 Medicago truncatula MTR_0041s0110 I 0.732
MTR_1g064430 Medicago truncatula MTR_1g064430 I 0.887
MTR_1g094960 Medicago truncatula MTR_1g094960 I 0.907
MTR_2g094570 Medicago truncatula MTR_2g094570 I 0.887
MTR_4g058930 Medicago truncatula MTR_4g058930 I 0.887
MTR_7g101275 Medicago truncatula MTR_7g101275 I 0.722
MTR_7g101280 Medicago truncatula MTR_7g101280 I 0.732
OB02G32150 Oryza brachyantha OB02G32150 I 0.823
OB04G25990 Oryza brachyantha OB04G25990 I 0.753
OB06G32920 Oryza brachyantha OB06G32920 I 0.887
OB10G20590 Oryza brachyantha OB10G20590 I 0.866
OBART04G18910 Oryza barthii OBART04G18910 I 0.784
OBART06G25230 Oryza barthii OBART06G25230 I 0.887
OBART10G13410 Oryza barthii OBART10G13410 I 0.856
OGLUM01G18360 Oryza glumaepatula OGLUM01G18360 I 0.784
OGLUM02G25270 Oryza glumaepatula OGLUM02G25270 I 0.825
OGLUM06G26560 Oryza glumaepatula OGLUM06G26560 I 0.887
OGLUM10G13220 Oryza glumaepatula OGLUM10G13220 I 0.856
OLONG_000617 Oryza longistaminata OLONG_000617 I 0.814
OLONG_021130 Oryza longistaminata OLONG_021130 I 0.845
OMERI02G24320 Oryza meridionalis OMERI02G24320 I 0.825
OMERI04G15770 Oryza meridionalis OMERI04G15770 I 0.784
OMERI06G25370 Oryza meridionalis OMERI06G25370 I 0.887
OMERI10G10210 Oryza meridionalis OMERI10G10210 I 0.856
ONIVA02G27180 Oryza nivara ONIVA02G27180 I 0.825
ONIVA06G28270 Oryza nivara ONIVA06G28270 I 0.887
ONIVA06G31350 Oryza nivara ONIVA06G31350 I 0.784
ONIVA10G14700 Oryza nivara ONIVA10G14700 I 0.856
OPUNC02G22610 Oryza punctata OPUNC02G22610 I 0.825
OPUNC04G16630 Oryza punctata OPUNC04G16630 I 0.784
OPUNC06G22960 Oryza punctata OPUNC06G22960 I 0.887
OPUNC10G11840 Oryza punctata OPUNC10G11840 I 0.856
orange1.1g004896m.g Citrus sinensis orange1.1g004896m.g I 0.835
orange1.1g005075m.g Citrus sinensis orange1.1g005075m.g I 0.918
orange1.1g005482m.g Citrus sinensis orange1.1g005482m.g I 0.948
ORGLA02G0215100 Oryza glaberrima ORGLA02G0215100 I 0.825
ORGLA04G0160200 Oryza glaberrima ORGLA04G0160200 I 0.784
ORGLA06G0209500 Oryza glaberrima ORGLA06G0209500 I 0.887
ORGLA10G0115500 Oryza glaberrima ORGLA10G0115500 I 0.856
ORUFI02G26180 Oryza rufipogon ORUFI02G26180 I 0.825
ORUFI04G20430 Oryza rufipogon ORUFI04G20430 I 0.750
ORUFI06G27120 Oryza rufipogon ORUFI06G27120 I 0.887
ORUFI10G14150 Oryza rufipogon ORUFI10G14150 I 0.856
ARF8 Oryza sativa OS02G0628600 I 0.825
OS04G0519700 Oryza sativa OS04G0519700 I 0.784
ARF18 Oryza sativa OS06G0685700 I 0.887
ARF22 Oryza sativa OS10G0479900 I 0.856
Pavir.Da00107 Panicum virgatum Pavir.Da00107 I 0.876
Pavir.Gb00635 Panicum virgatum Pavir.Gb00635 I 0.802
Pavir.Ia01695 Panicum virgatum Pavir.Ia01695 I 0.853
Pavir.J24081 Panicum virgatum Pavir.J24081 I 0.802
Pavir.J26437 Panicum virgatum Pavir.J26437 I 0.887
Pavir.J37640 Panicum virgatum Pavir.J37640 I 0.711
PDK_20s1359671g001 Phoenix dactylifera PDK_20s1359671g001 I 0.895
PGSC0003DMG400008081 Solanum tuberosum PGSC0003DMG400008081 I 0.865
PGSC0003DMG400021560 Solanum tuberosum PGSC0003DMG400021560 I 0.918
PGSC0003DMG400024320 Solanum tuberosum PGSC0003DMG400024320 I 0.763
PK13064.1 Cannabis sativa PK13064.1 I 0.856
PK13393.1 Cannabis sativa PK13393.1 I 0.804
PK17007.1 Cannabis sativa PK17007.1 I 0.907
Pm018533 Prunus mume Pm018533 I 0.918
Pm019126 Prunus mume Pm019126 I 0.701
Pm030120 Prunus mume Pm030120 I 0.918
Pm031275 Prunus mume Pm031275 I 0.918
POPTR_0002s09050 Populus trichocarpa POPTR_0002s09050 I 0.701
POPTR_0004s22130 Populus trichocarpa POPTR_0004s22130 I 0.907
POPTR_0005s16320 Populus trichocarpa POPTR_0005s16320 I 0.711
POPTR_0006s12930 Populus trichocarpa POPTR_0006s12930 I 0.866
POPTR_0008s03890 Populus trichocarpa POPTR_0008s03890 I 0.938
POPTR_0010s23000 Populus trichocarpa POPTR_0010s23000 I 0.938
POPTR_0016s09150 Populus trichocarpa POPTR_0016s09150 I 0.887
POPTR_0848s00200 Populus trichocarpa POPTR_0848s00200 I 0.907
PRUPE_ppa002082mg Prunus persica PRUPE_ppa002082mg I 0.907
PRUPE_ppa002195mg Prunus persica PRUPE_ppa002195mg I 0.918
PRUPE_ppa002710mg Prunus persica PRUPE_ppa002710mg I 0.938
PRUPE_ppa003136mg Prunus persica PRUPE_ppa003136mg I 0.701
SapurV1A.0049s0400 Salix purpurea SapurV1A.0049s0400 I 0.876
SapurV1A.0141s0090 Salix purpurea SapurV1A.0141s0090 I 0.856
SapurV1A.0216s0160 Salix purpurea SapurV1A.0216s0160 I 0.907
SapurV1A.0331s0130 Salix purpurea SapurV1A.0331s0130 I 0.711
SapurV1A.0518s0120 Salix purpurea SapurV1A.0518s0120 I 0.938
SapurV1A.0657s0050 Salix purpurea SapurV1A.0657s0050 I 0.918
SapurV1A.0986s0010 Salix purpurea SapurV1A.0986s0010 I 0.897
Sb01g019130 Sorghum bicolor Sb01g019130 I 0.876
Sb04g026610 Sorghum bicolor Sb04g026610 I 0.844
Sb10g027790 Sorghum bicolor Sb10g027790 I 0.887
ARF16 Arabidopsis lyrata scaffold_701217.1 I 0.918
SELMODRAFT_437622 Selaginella moellendorffii SELMODRAFT_437622 I 0.814
SELMODRAFT_443304 Selaginella moellendorffii SELMODRAFT_443304 I 0.845
SELMODRAFT_444549 Selaginella moellendorffii SELMODRAFT_444549 I 0.845
SELMODRAFT_451564 Selaginella moellendorffii SELMODRAFT_451564 I 0.814
Si005991m.g Setaria italica Si005991m.g I 0.887
Si009541m.g Setaria italica Si009541m.g I 0.753
Si016509m.g Setaria italica Si016509m.g I 0.835
Si034525m.g Setaria italica Si034525m.g I 0.876
Solyc06g075150.2 Solanum lycopersicum Solyc06g075150.2 I 0.745
Solyc09g007810.2 Solanum lycopersicum Solyc09g007810.2 I 0.918
Solyc10g086130.1 Solanum lycopersicum Solyc10g086130.1 I 0.773
Solyc11g069500.1 Solanum lycopersicum Solyc11g069500.1 I 0.887
TCM_022163 Theobroma cacao TCM_022163 I 0.928
TCM_035002 Theobroma cacao TCM_035002 I 0.732
TCM_042067 Theobroma cacao TCM_042067 I 0.907
TCM_043157 Theobroma cacao TCM_043157 I 0.928
Thhalv10016329m.g Eutrema salsugineum Thhalv10016329m.g I 0.856
Thhalv10024601m.g Eutrema salsugineum Thhalv10024601m.g I 0.918
Traes_2BL_A1A475B0F Triticum aestivum Traes_2BL_A1A475B0F I 0.833
Traes_6DL_52A25BEA4 Triticum aestivum Traes_6DL_52A25BEA4 I 0.764
ARF10 Vitis vinifera VIT_06s0004g02750 I 0.918
VIT_08s0040g01810 Vitis vinifera VIT_08s0040g01810 I 0.887
ARF16 Vitis vinifera VIT_13s0019g04380 I 0.907