Cucsa.381330 (Cucumis sativus)
B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02362 (B3) IPR003340 Cucsa.381330 T022382_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ARF16
M06708_2.00
Arabidopsis thaliana
TTTACGKTTTTGGCGGRAAAA

TTTTYCCGCCAAAAMCGTAAA
Dap-seq
OMalley et al.(2016)
ARF16_col_b
0.711 0.711
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cucsa.381330.1 B3 107 209

Links

Other B3 family TFs
Other Cucumis sativus TFs

134 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ARF16 Arabidopsis thaliana AT4G30080 D 0.711
POPTR_0008s03890 Populus trichocarpa POPTR_0008s03890 I 0.701
Pm019126 Prunus mume Pm019126 I 0.763
27538.m000327 Ricinus communis 27538.m000327 I 0.701
29908.m005953 Ricinus communis 29908.m005953 I 0.753
cassava36161.valid.m1 Manihot esculenta cassava36161.valid.m1 I 0.773
cassava37879.valid.m1 Manihot esculenta cassava37879.valid.m1 I 0.701
estExt_fgenesh1_pm.C_3390006 Physcomitrella patens estExt_fgenesh1_pm.C_3390006 I 0.701
mgf024607m Mimulus guttatus mgf024607m I 0.701
Aquca_030_00152 Aquilegia coerulea Aquca_030_00152 I 0.701
Bostr.27991s0089 Boechera stricta Bostr.27991s0089 I 0.701
Bostr.7867s0859 Boechera stricta Bostr.7867s0859 I 0.711
Cagra.1744s0020 Capsella grandiflora Cagra.1744s0020 I 0.711
Cagra.1876s0007 Capsella grandiflora Cagra.1876s0007 I 0.701
Carubv10004220m.g Capsella rubella Carubv10004220m.g I 0.711
Pm018533 Prunus mume Pm018533 I 0.701
Cla022413 Citrullus lanatus Cla022413 I 0.897
Cla013979 Citrullus lanatus Cla013979 I 0.701
POPTR_0010s23000 Populus trichocarpa POPTR_0010s23000 I 0.701
POPTR_0016s09150 Populus trichocarpa POPTR_0016s09150 I 0.701
POPTR_0848s00200 Populus trichocarpa POPTR_0848s00200 I 0.711
PRUPE_ppa002710mg Prunus persica PRUPE_ppa002710mg I 0.711
PRUPE_ppa003136mg Prunus persica PRUPE_ppa003136mg I 0.773
Sb10g027790 Sorghum bicolor Sb10g027790 I 0.711
ARF16 Arabidopsis lyrata scaffold_701217.1 I 0.711
SELMODRAFT_443304 Selaginella moellendorffii SELMODRAFT_443304 I 0.711
SELMODRAFT_444549 Selaginella moellendorffii SELMODRAFT_444549 I 0.711
Si005991m.g Setaria italica Si005991m.g I 0.711
TCM_035002 Theobroma cacao TCM_035002 I 0.773
TCM_043157 Theobroma cacao TCM_043157 I 0.711
Ca_26121 Cicer arietinum Ca_26121 I 0.701
Carubv10022755m.g Capsella rubella Carubv10022755m.g I 0.701
Ciclev10000693m.g Citrus clementina Ciclev10000693m.g I 0.773
Pavir.Da00107 Panicum virgatum Pavir.Da00107 I 0.711
Pavir.J26437 Panicum virgatum Pavir.J26437 I 0.711
SapurV1A.0010s0540 Salix purpurea SapurV1A.0010s0540 I 0.773
SapurV1A.0049s0400 Salix purpurea SapurV1A.0049s0400 I 0.701
SapurV1A.0141s0090 Salix purpurea SapurV1A.0141s0090 I 0.722
SapurV1A.0216s0160 Salix purpurea SapurV1A.0216s0160 I 0.701
SapurV1A.0331s0130 Salix purpurea SapurV1A.0331s0130 I 0.773
SapurV1A.0518s0120 Salix purpurea SapurV1A.0518s0120 I 0.701
SapurV1A.0657s0050 Salix purpurea SapurV1A.0657s0050 I 0.711
SapurV1A.0986s0010 Salix purpurea SapurV1A.0986s0010 I 0.701
Thhalv10016329m.g Eutrema salsugineum Thhalv10016329m.g I 0.701
Thhalv10024601m.g Eutrema salsugineum Thhalv10024601m.g I 0.711
chr1.LjT31L11.90.nd Lotus japonicus chr1.LjT31L11.90.nd I 0.773
orange1.1g008078m.g Citrus sinensis orange1.1g008078m.g I 0.773
orange1.1g005482m.g Citrus sinensis orange1.1g005482m.g I 0.711
MDP0000256621 Malus domestica MDP0000256621 I 0.742
Ciclev10030860m.g Citrus clementina Ciclev10030860m.g I 0.711
Eucgr.F04380 Eucalyptus grandis Eucgr.F04380 I 0.735
Eucgr.K01240 Eucalyptus grandis Eucgr.K01240 I 0.701
evm.TU.supercontig_49.122 Carica papaya evm.TU.supercontig_49.122 I 0.784
evm.TU.supercontig_53.88 Carica papaya evm.TU.supercontig_53.88 I 0.711
gene02234-v1.0-hybrid Fragaria vesca gene02234-v1.0-hybrid I 0.753
gene23280-v1.0-hybrid Fragaria vesca gene23280-v1.0-hybrid I 0.722
Gorai.009G241900 Gossypium raimondii Gorai.009G241900 I 0.763
Gorai.010G046000 Gossypium raimondii Gorai.010G046000 I 0.742
Gorai.012G004800 Gossypium raimondii Gorai.012G004800 I 0.711
Gorai.013G267100 Gossypium raimondii Gorai.013G267100 I 0.701
MDP0000131481 Malus domestica MDP0000131481 I 0.701
MDP0000221322 Malus domestica MDP0000221322 I 0.701
chr3.LjT10E18.60.nc Lotus japonicus chr3.LjT10E18.60.nc I 0.722
ARF10 Arabidopsis thaliana AT2G28350 I 0.701
GSMUA_Achr9G29480_001 Musa acuminata GSMUA_Achr9G29480_001 I 0.763
LPERR02G20290 Leersia perrieri LPERR02G20290 I 0.701
LPERR04G15300 Leersia perrieri LPERR04G15300 I 0.701
MTR_2g094570 Medicago truncatula MTR_2g094570 I 0.722
MTR_4g058930 Medicago truncatula MTR_4g058930 I 0.701
OB06G32920 Oryza brachyantha OB06G32920 I 0.711
OBART04G18910 Oryza barthii OBART04G18910 I 0.701
OBART06G25230 Oryza barthii OBART06G25230 I 0.711
OBART10G13410 Oryza barthii OBART10G13410 I 0.701
OGLUM01G18360 Oryza glumaepatula OGLUM01G18360 I 0.701
OGLUM02G25270 Oryza glumaepatula OGLUM02G25270 I 0.701
OGLUM06G26560 Oryza glumaepatula OGLUM06G26560 I 0.711
GLYMA13G40030 Glycine max GLYMA13G40030 I 0.711
GLYMA12G29720 Glycine max GLYMA12G29720 I 0.711
BGIOSGA008657 Oryza indica BGIOSGA008657 I 0.701
ARF10 Oryza indica BGIOSGA016767 I 0.701
BGIOSGA033142 Oryza indica BGIOSGA033142 I 0.701
Bo1g014600 Brassica oleracea Bo1g014600 I 0.711
AC207656.3_FG002 Zea mays AC207656.3_FG002 I 0.711
Bo7g114200 Brassica oleracea Bo7g114200 I 0.722
Bra011162 Brassica rapa Bra011162 I 0.711
Bra024109 Brassica rapa Bra024109 I 0.711
BRADI1G33160 Brachypodium distachyon BRADI1G33160 I 0.711
ARF10 Arabidopsis lyrata fgenesh2_kg.4__731__AT2G28350.1 I 0.701
GLYMA11G20490 Glycine max GLYMA11G20490 I 0.711
GLYMA12G08110 Glycine max GLYMA12G08110 I 0.711
OGLUM10G13220 Oryza glumaepatula OGLUM10G13220 I 0.701
OMERI02G24320 Oryza meridionalis OMERI02G24320 I 0.701
POPTR_0006s12930 Populus trichocarpa POPTR_0006s12930 I 0.711
ORGLA04G0160200 Oryza glaberrima ORGLA04G0160200 I 0.701
ORGLA06G0209500 Oryza glaberrima ORGLA06G0209500 I 0.711
ORUFI10G14150 Oryza rufipogon ORUFI10G14150 I 0.701
ORGLA10G0115500 Oryza glaberrima ORGLA10G0115500 I 0.701
ORUFI02G26180 Oryza rufipogon ORUFI02G26180 I 0.701
ORUFI06G27120 Oryza rufipogon ORUFI06G27120 I 0.711
ARF8 Oryza sativa OS02G0628600 I 0.701
OS04G0519700 Oryza sativa OS04G0519700 I 0.701
ARF18 Oryza sativa OS06G0685700 I 0.711
ARF22 Oryza sativa OS10G0479900 I 0.701
POPTR_0002s09050 Populus trichocarpa POPTR_0002s09050 I 0.763
POPTR_0004s22130 Populus trichocarpa POPTR_0004s22130 I 0.711
POPTR_0005s16320 Populus trichocarpa POPTR_0005s16320 I 0.773
ORGLA02G0215100 Oryza glaberrima ORGLA02G0215100 I 0.701
OPUNC10G11840 Oryza punctata OPUNC10G11840 I 0.701
OPUNC06G22960 Oryza punctata OPUNC06G22960 I 0.711
OMERI10G10210 Oryza meridionalis OMERI10G10210 I 0.701
ONIVA06G28270 Oryza nivara ONIVA06G28270 I 0.711
ONIVA06G31350 Oryza nivara ONIVA06G31350 I 0.701
OMERI06G25370 Oryza meridionalis OMERI06G25370 I 0.711
ONIVA10G14700 Oryza nivara ONIVA10G14700 I 0.701
OMERI04G15770 Oryza meridionalis OMERI04G15770 I 0.701
OPUNC02G22610 Oryza punctata OPUNC02G22610 I 0.701
OPUNC04G16630 Oryza punctata OPUNC04G16630 I 0.701
ONIVA02G27180 Oryza nivara ONIVA02G27180 I 0.701
Bostr.20129s0222 Boechera stricta Bostr.20129s0222 N 0.722
Thhalv10018331m.g Eutrema salsugineum Thhalv10018331m.g N 0.701
Carubv10019991m.g Capsella rubella Carubv10019991m.g N 0.732
ARF17 Arabidopsis thaliana AT1G77850 N 0.701
Bo6g121520 Brassica oleracea Bo6g121520 N 0.711
Bra003665 Brassica rapa Bra003665 N 0.711
gene16050-v1.0-hybrid Fragaria vesca gene16050-v1.0-hybrid N 0.732
Lus10009770.g Linum usitatissimum Lus10009770.g N 0.742
Lus10024753.g Linum usitatissimum Lus10024753.g N 0.742
MTR_3g073420 Medicago truncatula MTR_3g073420 N 0.711
Cagra.0096s0050 Capsella grandiflora Cagra.0096s0050 N 0.732
GLYMA04G43350 Glycine max GLYMA04G43350 N 0.732
Lus10024754.g Linum usitatissimum Lus10024754.g N 0.732
Bra015651 Brassica rapa Bra015651 N 0.711
ARF17 Arabidopsis lyrata scaffold_202748.1 N 0.701
Bo6g081980 Brassica oleracea Bo6g081980 N 0.711