CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
Cagra.2007s0005
(
Capsella grandiflora
)
B3
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF02362 (B3)
IPR003340
Cagra.2007s0005
T022775_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Cagra.2007s0005.1.p
B3
10
106
FFKVFLPEFSSHELVIPPAFIDLLVGKPLPKEAFLLDEIGRLWRVEIKTEDTEERFCVLFQKGWECFAKDQSLEFGDFLVFSYDGGSRFSVTIFAKD
Cagra.2007s0005.1.p
B3
207
302
FLRNITCSSFHKLEIPITFLRSNGIELEEEIELCDEDGKKWPLKVENHVRGLRFSCETWSCFSKGHKLMKNHKFLLEFVASSGRCKEIQVRVVSGR
Links
Other
B3
family TFs
Other
Capsella grandiflora
TFs
4 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Carubv10028109m.g
Capsella rubella
Carubv10028109m.g
N
0.979
Bostr.0568s0121
Boechera stricta
Bostr.0568s0121
N
0.798
fgenesh2_kg.8__2718__AT5G66980.1
Arabidopsis lyrata
fgenesh2_kg.8__2718__AT5G66980.1
N
0.781
AT5G66980
Arabidopsis thaliana
AT5G66980
N
0.761