CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Carubv10006245m.g
(
Capsella rubella
)
B3
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF02362 (B3)
IPR003340
Carubv10006245m.g
T022840_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Carubv10006245m
B3
1
78
VIPISYYDQLPRVLPKKVILQGPGGGSWNVATKIRGEEVHLAQGWSKFVEDNTLNDGDFLTFIYNGDRIFEVSIYRSD
Carubv10006245m
B3
296
347
KLRAKTAKWKDQRVCIKRWMRICKRNELKKEDRILCELLRRGSFVYAIKLHV
Links
Other
B3
family TFs
Other
Capsella rubella
TFs
4 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Cagra.6777s0013
Capsella grandiflora
Cagra.6777s0013
N
0.903
Bostr.7867s1292
Boechera stricta
Bostr.7867s1292
N
0.774
AT4G34400
Arabidopsis thaliana
AT4G34400
N
0.762
scaffold_700694.1
Arabidopsis lyrata
scaffold_700694.1
N
0.746