evm.TU.supercontig_26.25 (Carica papaya)
B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02362 (B3) IPR003340 evm.TU.supercontig_26.25 T023134_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ARF5
M06701_2.00
Arabidopsis thaliana
WYTTGTCGGN

NCCGACAARW
Dap-seq
OMalley et al.(2016)
MP_col
0.859 0.859
ARF8
M01697_2.00
Arabidopsis thaliana
NHTGTCGGN

NCCGACADN
PBM
Weirauch et al.(2014)
pTH8661
0.808 0.808
ARF3
M00852_2.00
Arabidopsis thaliana
NKGTYBNN

NNVRACMN
PBM
Franco-Zorrilla et al.(2014)
ETTIN
0.705 0.705
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
evm.model.supercontig_26.25 B3 148 230

Links

Other B3 family TFs
Other Carica papaya TFs

71 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
LjSGA_026543.1 Lotus japonicus LjSGA_026543.1 I 0.729
Carubv10008258m.g Capsella rubella Carubv10008258m.g I 0.745
Cagra.1961s0022 Capsella grandiflora Cagra.1961s0022 I 0.745
Bostr.7128s0585 Boechera stricta Bostr.7128s0585 I 0.745
Aquca_007_00393 Aquilegia coerulea Aquca_007_00393 I 0.745
mgf025960m Mimulus guttatus mgf025960m I 0.745
mgf023734m Mimulus guttatus mgf023734m I 0.755
Cucsa.342870 Cucumis sativus Cucsa.342870 I 0.745
Cucsa.173470 Cucumis sativus Cucsa.173470 I 0.712
Cucsa.117420 Cucumis sativus Cucsa.117420 I 0.827
cassava45001.m1 Manihot esculenta cassava45001.m1 I 0.745
30170.m014161 Ricinus communis 30170.m014161 I 0.755
Pm006237 Prunus mume Pm006237 I 0.724
Cla021128 Citrullus lanatus Cla021128 I 0.755
Cla009258 Citrullus lanatus Cla009258 I 0.700
Ca_10748 Cicer arietinum Ca_10748 I 0.745
Ciclev10000183m.g Citrus clementina Ciclev10000183m.g I 0.765
Eucgr.F02090 Eucalyptus grandis Eucgr.F02090 I 0.735
evm.TU.supercontig_115.30 Carica papaya evm.TU.supercontig_115.30 I 0.835
LjSGA_022975.2 Lotus japonicus LjSGA_022975.2 I 0.788
LjSGA_022280.1 Lotus japonicus LjSGA_022280.1 I 0.755
Thhalv10006748m.g Eutrema salsugineum Thhalv10006748m.g I 0.745
SapurV1A.4298s0010 Salix purpurea SapurV1A.4298s0010 I 0.800
SapurV1A.0389s0330 Salix purpurea SapurV1A.0389s0330 I 0.755
Pavir.Gb00274 Panicum virgatum Pavir.Gb00274 I 0.739
orange1.1g002516m.g Citrus sinensis orange1.1g002516m.g I 0.765
MDP0000211459 Malus domestica MDP0000211459 I 0.745
MDP0000143749 Malus domestica MDP0000143749 I 0.745
Lus10024320.g Linum usitatissimum Lus10024320.g I 0.897
Lus10012421.g Linum usitatissimum Lus10012421.g I 0.724
Gorai.009G196100 Gossypium raimondii Gorai.009G196100 I 0.735
Gorai.002G124400 Gossypium raimondii Gorai.002G124400 I 0.755
gene08492-v1.0-hybrid Fragaria vesca gene08492-v1.0-hybrid I 0.735
evm.TU.supercontig_26.24 Carica papaya evm.TU.supercontig_26.24 I 0.776
MP Vitis vinifera VIT_18s0001g13930 I 0.704
VIT_03s0167g00010 Vitis vinifera VIT_03s0167g00010 I 0.812
LPERR04G24160 Leersia perrieri LPERR04G24160 I 0.708
GSMUA_Achr6G36980_001 Musa acuminata GSMUA_Achr6G36980_001 I 0.716
GSMUA_Achr1G20000_001 Musa acuminata GSMUA_Achr1G20000_001 I 0.793
GLYMA17G37580 Glycine max GLYMA17G37580 I 0.755
GLYMA14G40540 Glycine max GLYMA14G40540 I 0.755
MP Arabidopsis lyrata fgenesh2_kg.1__2164__AT1G19850.1 I 0.745
F775_20129 Aegilops tauschii F775_20129 I 0.710
F775_17365 Aegilops tauschii F775_17365 I 0.731
Bra025775 Brassica rapa Bra025775 I 0.745
Bra016492 Brassica rapa Bra016492 I 0.745
Bra012190 Brassica rapa Bra012190 I 0.745
Bo8g069820 Brassica oleracea Bo8g069820 I 0.745
Bo7g062090 Brassica oleracea Bo7g062090 I 0.745
Bo5g027930 Brassica oleracea Bo5g027930 I 0.745
BGIOSGA014158 Oryza indica BGIOSGA014158 I 0.756
MLOC_25537 Hordeum vulgare MLOC_25537 I 0.709
MLOC_55345 Hordeum vulgare MLOC_55345 I 0.907
MTR_1g024025 Medicago truncatula MTR_1g024025 I 0.755
VIT_00s1203g00010 Vitis vinifera VIT_00s1203g00010 I 0.788
TRIUR3_12386 Triticum urartu TRIUR3_12386 I 0.716
Traes_2AL_98457FFEE Triticum aestivum Traes_2AL_98457FFEE I 0.787
TCM_034194 Theobroma cacao TCM_034194 I 0.765
Solyc12g006350.1 Solanum lycopersicum Solyc12g006350.1 I 0.736
Solyc04g081240.2 Solanum lycopersicum Solyc04g081240.2 I 0.755
PRUPE_ppa000946mg Prunus persica PRUPE_ppa000946mg I 0.724
POPTR_0005s25800 Populus trichocarpa POPTR_0005s25800 I 0.755
POPTR_0002s02630 Populus trichocarpa POPTR_0002s02630 I 0.724
PGSC0003DMG400003771 Solanum tuberosum PGSC0003DMG400003771 I 0.755
ORUFI06G26570 Oryza rufipogon ORUFI06G26570 I 0.740
ORUFI04G30260 Oryza rufipogon ORUFI04G30260 I 0.708
OMERI04G24630 Oryza meridionalis OMERI04G24630 I 0.745
OMERI04G24170 Oryza meridionalis OMERI04G24170 I 0.708
OBART04G28590 Oryza barthii OBART04G28590 I 0.708
AMTR_s00211p00025860 Amborella trichopoda AMTR_s00211p00025860 I 0.704
chr6.CM0420.10.nd Lotus japonicus chr6.CM0420.10.nd N 0.721