Pavir.Ga00205 (Panicum virgatum)
B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02362 (B3) IPR003340 Pavir.Ga00205 T023861_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ARF8
M01697_2.00 		Arabidopsis thaliana
NHTGTCGGN
NCCGACADN		 PBM
Weirauch et al.(2014)
pTH8661 		0.918 0.918
ARF5
M06701_2.00 		Arabidopsis thaliana
WYTTGTCGGN
NCCGACAARW		 Dap-seq
OMalley et al.(2016)
MP_col 		0.714 0.714
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ga00205.1.p B3 152 254
Pavir.Ga00205.2.p B3 131 233
Pavir.Ga00205.3.p B3 131 233
Pavir.Ga00205.4.p B3 152 254
Pavir.Ga00205.5.p B3 152 254
Pavir.Ga00205.6.p B3 131 233
Pavir.Ga00205.7.p B3 131 233
Pavir.Ga00205.8.p B3 152 254

Links

Other B3 family TFs
Other Panicum virgatum TFs

Invalid Input OrderBy

506 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action