Pavir.J00164 (Panicum virgatum)
B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02362 (B3) IPR003340 Pavir.J00164 T023924_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ARF8
M01697_2.00
Arabidopsis thaliana
NHTGTCGGN

NCCGACADN
PBM
Weirauch et al.(2014)
pTH8661
0.806 0.806
ARF5
M06701_2.00
Arabidopsis thaliana
WYTTGTCGGN

NCCGACAARW
Dap-seq
OMalley et al.(2016)
MP_col
0.776 0.776
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J00164.1.p B3 145 247
Pavir.J00164.2.p B3 145 247
Pavir.J00164.3.p B3 89 191

Links

Other B3 family TFs
Other Panicum virgatum TFs

491 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ANCCAN_20966 Ancylostoma caninum ANCCAN_20966 I 0.000
ASIM_0001977801 Anisakis simplex ASIM_0001977801 N 0.000
ASIM_0001625501 Anisakis simplex ASIM_0001625501 N 0.000
ALUE_0001388001 Ascaris lumbricoides ALUE_0001388001 N 0.000
ASU_12809 Ascaris suum ASU_12809 N 0.000
Bm6751 Brugia malayi Bm6751 N 0.000
BTMF_0000069401 Brugia timori BTMF_0000069401 N 0.000
BXY_1758300 Bursaphelenchus xylophilus BXY_1758300 N 0.000
CBG01045 Caenorhabditis briggsae CBG01045 I 0.000
CRE05176 Caenorhabditis remanei CRE05176 I 0.000
DICVIV_07866 Dictyocaulus viviparus DICVIV_07866 I 0.000
nDi.2.2.2.g08383 Dirofilaria immitis nDi.2.2.2.g08383 N 0.000
DME_0000089401 Dracunculus medinensis DME_0000089401 I 0.000
HPLM_0001799301 Haemonchus placei HPLM_0001799301 I 0.000
maker-nMf.1.1.scaf14853-snap-gene-0.4 Meloidogyne floridensis maker-nMf.1.1.scaf14853-snap-gene-0.4 N 0.000
MhA1_Contig131.frz3.gene12 Meloidogyne hapla MhA1_Contig131.frz3.gene12 N 0.000
Minc08811 Meloidogyne incognita Minc08811 N 0.000
WBGene00246765 Onchocerca volvulus WBGene00246765 N 0.000
L596_g3695 Steinernema carpocapsae L596_g3695 N 0.000
L889_g12838 Steinernema feltiae L889_g12838 N 0.000
L893_g18186 Steinernema glaseri L893_g18186 N 0.000
L898_g139 Steinernema monticolum L898_g139 N 0.000
L892_g4460 Steinernema scapterisci L892_g4460 N 0.000
SMUV_0000808801 Syphacia muris SMUV_0000808801 I 0.000
TELCIR_03315 Teladorsagia circumcincta TELCIR_03315 I 0.000
TCLT_0000932101 Thelazia callipaeda TCLT_0000932101 N 0.000
TCNE_0001371701 Toxocara canis TCNE_0001371701 N 0.000