CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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PDK_20s1535431g002
(
Phoenix dactylifera
)
B3
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF02362 (B3)
IPR003340
PDK_20s1535431g002
T024476_2.00
Superfamily (2010-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ARF8
M01697_2.00
Arabidopsis thaliana
NHTGTCGGN
NCCGACADN
PBM
Weirauch et al.(2014)
pTH8661
0.730
0.730
ARF5
M06701_2.00
Arabidopsis thaliana
WYTTGTCGGN
NCCGACAARW
Dap-seq
OMalley et al.(2016)
MP_col
0.730
0.730
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
PDK_20s1535431g002
B3
18
106
FCKTLTASDTSTHGGFSVPRRAAEKIFPPLWQFYHTGSPTLILSGQPKRHLLTTGWSVFISTKRLVAGDSVLFIRDEKSQLLLGIRRAN
Links
Other
B3
family TFs
Other
Phoenix dactylifera
TFs
222 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
chr6.CM0420.80.nd
Lotus japonicus
chr6.CM0420.80.nd
I
0.909
VIT_11s0016g00640
Vitis vinifera
VIT_11s0016g00640
I
0.831
29739.m003713
Ricinus communis
29739.m003713
I
0.831
POPTR_0006s14070
Populus trichocarpa
POPTR_0006s14070
I
0.831
Pm027119
Prunus mume
Pm027119
I
0.820
Gorai.010G091300
Gossypium raimondii
Gorai.010G091300
I
0.820
MTR_4g124900
Medicago truncatula
MTR_4g124900
I
0.820
PRUPE_ppa000708mg
Prunus persica
PRUPE_ppa000708mg
I
0.820
OB06G15720
Oryza brachyantha
OB06G15720
I
0.809
BRADI1G46602
Brachypodium distachyon
BRADI1G46602
I
0.798
Traes_7BS_F44A273F8
Triticum aestivum
Traes_7BS_F44A273F8
I
0.787
Traes_7DS_1948388F8
Triticum aestivum
Traes_7DS_1948388F8
I
0.787
Traes_7AS_582E3076D
Triticum aestivum
Traes_7AS_582E3076D
I
0.787
mgf012918m
Mimulus guttatus
mgf012918m
I
0.787
PRUPE_ppa000479mg
Prunus persica
PRUPE_ppa000479mg
I
0.787
MDP0000185253
Malus domestica
MDP0000185253
I
0.787
Lus10033635.g
Linum usitatissimum
Lus10033635.g
I
0.787
GSMUA_Achr5G05010_001
Musa acuminata
GSMUA_Achr5G05010_001
I
0.787
MTR_2g043250
Medicago truncatula
MTR_2g043250
I
0.787
MLOC_14584
Hordeum vulgare
MLOC_14584
I
0.787
Pm008963
Prunus mume
Pm008963
I
0.787
OPUNC08G18850
Oryza punctata
OPUNC08G18850
I
0.775
PK26077.1
Cannabis sativa
PK26077.1
I
0.775
ONIVA08G23730
Oryza nivara
ONIVA08G23730
I
0.775
OMERI02G01870
Oryza meridionalis
OMERI02G01870
I
0.775
ORGLA08G0183900
Oryza glaberrima
ORGLA08G0183900
I
0.775
OBART08G20780
Oryza barthii
OBART08G20780
I
0.775
MDP0000268306
Malus domestica
MDP0000268306
I
0.775
OGLUM08G22050
Oryza glumaepatula
OGLUM08G22050
I
0.775
PRUPE_ppa001179mg
Prunus persica
PRUPE_ppa001179mg
I
0.775
Gorai.009G152700
Gossypium raimondii
Gorai.009G152700
I
0.775
29599.m000177
Ricinus communis
29599.m000177
I
0.775
gene30394-v1.0-hybrid
Fragaria vesca
gene30394-v1.0-hybrid
I
0.775
cassava2408.valid.m1
Manihot esculenta
cassava2408.valid.m1
I
0.775
Pm010467
Prunus mume
Pm010467
I
0.775
ARF6
Vitis vinifera
VIT_10s0003g04100
I
0.775
OS08G0520550
Oryza sativa
OS08G0520550
I
0.775
MDP0000232417
Malus domestica
MDP0000232417
I
0.775
AMTR_s00007p00267580
Amborella trichopoda
AMTR_s00007p00267580
I
0.775
ORUFI08G23260
Oryza rufipogon
ORUFI08G23260
I
0.775
TCM_029410
Theobroma cacao
TCM_029410
I
0.775
BGIOSGA026655
Oryza indica
BGIOSGA026655
I
0.775
AMTR_s00092p00072950
Amborella trichopoda
AMTR_s00092p00072950
I
0.775
cassava29104.valid.m1
Manihot esculenta
cassava29104.valid.m1
I
0.764
cassava30266.valid.m1
Manihot esculenta
cassava30266.valid.m1
I
0.764
cassava29103.valid.m1
Manihot esculenta
cassava29103.valid.m1
I
0.764
cassava30265.valid.m1
Manihot esculenta
cassava30265.valid.m1
I
0.764
Cla009963
Citrullus lanatus
Cla009963
I
0.764
POPTR_0017s01870
Populus trichocarpa
POPTR_0017s01870
I
0.764
Solyc04g081240.2
Solanum lycopersicum
Solyc04g081240.2
I
0.764
TCM_017488
Theobroma cacao
TCM_017488
I
0.764
cassava32201.m1
Manihot esculenta
cassava32201.m1
I
0.764
29769.m000463
Ricinus communis
29769.m000463
I
0.764
Cucsa.047990
Cucumis sativus
Cucsa.047990
I
0.764
Lus10024320.g
Linum usitatissimum
Lus10024320.g
I
0.764
Lus10031354.g
Linum usitatissimum
Lus10031354.g
I
0.764
MDP0000143749
Malus domestica
MDP0000143749
I
0.764
SapurV1A.0147s0210
Salix purpurea
SapurV1A.0147s0210
I
0.764
Lus10010969.g
Linum usitatissimum
Lus10010969.g
I
0.764
Lus10007386.g
Linum usitatissimum
Lus10007386.g
I
0.764
PGSC0003DMG400003771
Solanum tuberosum
PGSC0003DMG400003771
I
0.764
mgf005961m
Mimulus guttatus
mgf005961m
I
0.764
Aquca_002_01425
Aquilegia coerulea
Aquca_002_01425
I
0.764
cassava35541.valid.m1
Manihot esculenta
cassava35541.valid.m1
I
0.764
Ca_15694
Cicer arietinum
Ca_15694
I
0.764
MTR_5g076270
Medicago truncatula
MTR_5g076270
I
0.764
GRMZM2G317900
Zea mays
GRMZM2G317900
I
0.764
GSMUA_Achr11G01610_001
Musa acuminata
GSMUA_Achr11G01610_001
I
0.764
PGSC0003DMG401018664
Solanum tuberosum
PGSC0003DMG401018664
I
0.760
Pavir.Cb00190
Panicum virgatum
Pavir.Cb00190
I
0.755
Gorai.008G097200
Gossypium raimondii
Gorai.008G097200
I
0.753
GSMUA_Achr11G25770_001
Musa acuminata
GSMUA_Achr11G25770_001
I
0.753
Si013155m.g
Setaria italica
Si013155m.g
I
0.753
Cucsa.152170
Cucumis sativus
Cucsa.152170
I
0.753
Ca_05025
Cicer arietinum
Ca_05025
I
0.753
Cla019844
Citrullus lanatus
Cla019844
I
0.753
Cla021128
Citrullus lanatus
Cla021128
I
0.753
SapurV1A.0289s0180
Salix purpurea
SapurV1A.0289s0180
I
0.753
SapurV1A.0030s0180
Salix purpurea
SapurV1A.0030s0180
I
0.753
GLYMA01G00510
Glycine max
GLYMA01G00510
I
0.753
SapurV1A.0521s0030
Salix purpurea
SapurV1A.0521s0030
I
0.745
GSMUA_Achr9G18170_001
Musa acuminata
GSMUA_Achr9G18170_001
I
0.745
TCM_037484
Theobroma cacao
TCM_037484
I
0.745
Eucgr.C03293
Eucalyptus grandis
Eucgr.C03293
I
0.745
Solyc02g037530.2
Solanum lycopersicum
Solyc02g037530.2
I
0.742
Traes_7BL_66296695F
Triticum aestivum
Traes_7BL_66296695F
I
0.742
Traes_7DL_C89614A4D
Triticum aestivum
Traes_7DL_C89614A4D
I
0.742
Bra028110
Brassica rapa
Bra028110
I
0.742
Ca_10748
Cicer arietinum
Ca_10748
I
0.742
mgf007038m
Mimulus guttatus
mgf007038m
I
0.742
orange1.1g001728m.g
Citrus sinensis
orange1.1g001728m.g
I
0.742
orange1.1g002390m.g
Citrus sinensis
orange1.1g002390m.g
I
0.742
chr4.CM0006.290.nc
Lotus japonicus
chr4.CM0006.290.nc
I
0.742
LjSGA_069146.1
Lotus japonicus
LjSGA_069146.1
I
0.742
Bo4g136370
Brassica oleracea
Bo4g136370
I
0.742
Ciclev10014200m.g
Citrus clementina
Ciclev10014200m.g
I
0.742
MTR_1g024025
Medicago truncatula
MTR_1g024025
I
0.742
MLOC_58330
Hordeum vulgare
MLOC_58330
I
0.742
SELMODRAFT_451392
Selaginella moellendorffii
SELMODRAFT_451392
I
0.742
Ciclev10007286m.g
Citrus clementina
Ciclev10007286m.g
I
0.742
GRMZM2G102845
Zea mays
GRMZM2G102845
I
0.742
OB12G25550
Oryza brachyantha
OB12G25550
I
0.742
Sb04g003240
Sorghum bicolor
Sb04g003240
I
0.742
SELMODRAFT_179736
Selaginella moellendorffii
SELMODRAFT_179736
I
0.742
GLYMA05G36430
Glycine max
GLYMA05G36430
I
0.742
Cucsa.117430
Cucumis sativus
Cucsa.117430
N
0.737
Cagra.1961s0078
Capsella grandiflora
Cagra.1961s0078
I
0.735
Carubv10008159m.g
Capsella rubella
Carubv10008159m.g
I
0.735
gene12917-v1.0-hybrid
Fragaria vesca
gene12917-v1.0-hybrid
I
0.735
ORUFI06G06450
Oryza rufipogon
ORUFI06G06450
I
0.735
Cagra.1796s0004
Capsella grandiflora
Cagra.1796s0004
I
0.735
Bostr.26527s0132
Boechera stricta
Bostr.26527s0132
I
0.735
OGLUM06G06490
Oryza glumaepatula
OGLUM06G06490
I
0.735
GRMZM2G160005
Zea mays
GRMZM2G160005
I
0.735
OS06G0196700
Oryza sativa
OS06G0196700
I
0.735
Bostr.7128s0527
Boechera stricta
Bostr.7128s0527
I
0.735
ORGLA06G0056900
Oryza glaberrima
ORGLA06G0056900
I
0.735
OMERI03G32190
Oryza meridionalis
OMERI03G32190
I
0.735
ONIVA06G07160
Oryza nivara
ONIVA06G07160
I
0.735
Thhalv10006635m.g
Eutrema salsugineum
Thhalv10006635m.g
I
0.735
Thhalv10012513m.g
Eutrema salsugineum
Thhalv10012513m.g
I
0.735
AMTR_s00025p00198750
Amborella trichopoda
AMTR_s00025p00198750
I
0.735
OLONG_009780
Oryza longistaminata
OLONG_009780
I
0.735
OPUNC06G05940
Oryza punctata
OPUNC06G05940
I
0.735
MDP0000876321
Malus domestica
MDP0000876321
I
0.735
LPERR06G05720
Leersia perrieri
LPERR06G05720
I
0.735
GLYMA15G19980
Glycine max
GLYMA15G19980
I
0.735
ARF16
Oryza indica
BGIOSGA022468
I
0.735
NPH4
Arabidopsis thaliana
AT5G20730
I
0.735
ARF19
Arabidopsis thaliana
AT1G19220
I
0.735
OBART06G06150
Oryza barthii
OBART06G06150
I
0.735
Bo5g027250
Brassica oleracea
Bo5g027250
I
0.735
TRIUR3_33045
Triticum urartu
TRIUR3_33045
I
0.735
Bra025720
Brassica rapa
Bra025720
I
0.735
Traes_7DS_7375BED72
Triticum aestivum
Traes_7DS_7375BED72
I
0.735
F775_12532
Aegilops tauschii
F775_12532
I
0.735
Sb10g006440
Sorghum bicolor
Sb10g006440
I
0.735
NPH4
Arabidopsis lyrata
fgenesh2_kg.6__2115__AT5G20730.1
I
0.735
GLYMA09G08350
Glycine max
GLYMA09G08350
I
0.735
Traes_7BS_3FD792335
Triticum aestivum
Traes_7BS_3FD792335
I
0.735
PK17611.1
Cannabis sativa
PK17611.1
I
0.732
Cla017138
Citrullus lanatus
Cla017138
I
0.732
cassava7809.valid.m1
Manihot esculenta
cassava7809.valid.m1
I
0.732
SapurV1A.0355s0030
Salix purpurea
SapurV1A.0355s0030
I
0.730
Sb08g021460
Sorghum bicolor
Sb08g021460
I
0.730
Gorai.009G037100
Gossypium raimondii
Gorai.009G037100
I
0.724
Bra020125
Brassica rapa
Bra020125
I
0.724
Bra002327
Brassica rapa
Bra002327
I
0.724
BRADI3G40437
Brachypodium distachyon
BRADI3G40437
I
0.724
Pavir.Db01975
Panicum virgatum
Pavir.Db01975
I
0.724
Si005753m.g
Setaria italica
Si005753m.g
I
0.724
SapurV1A.0001s2530
Salix purpurea
SapurV1A.0001s2530
I
0.724
Pavir.Da01885
Panicum virgatum
Pavir.Da01885
I
0.724
MDP0000886637
Malus domestica
MDP0000886637
I
0.724
Bo2g023110
Brassica oleracea
Bo2g023110
I
0.724
Bo8g068380
Brassica oleracea
Bo8g068380
I
0.724
cassava25060.valid.m1
Manihot esculenta
cassava25060.valid.m1
I
0.724
GLYMA17G05220
Glycine max
GLYMA17G05220
I
0.722
Ca_03128
Cicer arietinum
Ca_03128
I
0.722
Solyc07g042260.2
Solanum lycopersicum
Solyc07g042260.2
I
0.722
GLYMA13G17270
Glycine max
GLYMA13G17270
I
0.722
Traes_2DL_FBE64209C
Triticum aestivum
Traes_2DL_FBE64209C
I
0.719
GSMUA_Achr6G19850_001
Musa acuminata
GSMUA_Achr6G19850_001
I
0.719
Sb07g027080
Sorghum bicolor
Sb07g027080
I
0.719
Traes_2BL_E322FD546
Triticum aestivum
Traes_2BL_E322FD546
I
0.719
Sb06g031900
Sorghum bicolor
Sb06g031900
I
0.719
Traes_2AL_05ECC440C
Triticum aestivum
Traes_2AL_05ECC440C
I
0.719
Lus10033597.g
Linum usitatissimum
Lus10033597.g
I
0.719
GRMZM2G081158
Zea mays
GRMZM2G081158
I
0.719
Lus10017640.g
Linum usitatissimum
Lus10017640.g
I
0.719
GRMZM2G086949
Zea mays
GRMZM2G086949
I
0.719
GRMZM2G034840
Zea mays
GRMZM2G034840
I
0.719
MLOC_55345
Hordeum vulgare
MLOC_55345
I
0.719
OLONG_008746
Oryza longistaminata
OLONG_008746
N
0.717
Aquca_018_00174
Aquilegia coerulea
Aquca_018_00174
I
0.714
Lus10027600.g
Linum usitatissimum
Lus10027600.g
I
0.714
Lus10022943.g
Linum usitatissimum
Lus10022943.g
I
0.714
Pavir.J00164
Panicum virgatum
Pavir.J00164
I
0.714
GSMUA_Achr9G14090_001
Musa acuminata
GSMUA_Achr9G14090_001
I
0.714
Si005741m.g
Setaria italica
Si005741m.g
I
0.714
Bo9g151530
Brassica oleracea
Bo9g151530
I
0.714
TCM_039715
Theobroma cacao
TCM_039715
I
0.714
POPTR_0018s07420
Populus trichocarpa
POPTR_0018s07420
I
0.714
orange1.1g001969m.g
Citrus sinensis
orange1.1g001969m.g
I
0.714
gene08492-v1.0-hybrid
Fragaria vesca
gene08492-v1.0-hybrid
I
0.714
Ciclev10007292m.g
Citrus clementina
Ciclev10007292m.g
I
0.714
Cla005884
Citrullus lanatus
Cla005884
I
0.714
Ca_19289
Cicer arietinum
Ca_19289
I
0.714
Cucsa.071070
Cucumis sativus
Cucsa.071070
I
0.714
Pavir.Db00232
Panicum virgatum
Pavir.Db00232
I
0.714
MTR_8g101360
Medicago truncatula
MTR_8g101360
I
0.714
POPTR_0006s07740
Populus trichocarpa
POPTR_0006s07740
I
0.714
cassava44112.valid.m1
Manihot esculenta
cassava44112.valid.m1
I
0.714
Bo6g099440
Brassica oleracea
Bo6g099440
I
0.708
Bra004125
Brassica rapa
Bra004125
I
0.708
OB06G34290
Oryza brachyantha
OB06G34290
I
0.704
30185.m000956
Ricinus communis
30185.m000956
I
0.704
chr2.CM0373.570.nc
Lotus japonicus
chr2.CM0373.570.nc
I
0.704
PK20354.1
Cannabis sativa
PK20354.1
I
0.704
ONIVA06G29090
Oryza nivara
ONIVA06G29090
I
0.704
OMERI06G26660
Oryza meridionalis
OMERI06G26660
I
0.704
OPUNC06G24250
Oryza punctata
OPUNC06G24250
I
0.704
ORUFI06G28510
Oryza rufipogon
ORUFI06G28510
I
0.704
Eucgr.C02178
Eucalyptus grandis
Eucgr.C02178
I
0.704
GLYMA15G09750
Glycine max
GLYMA15G09750
I
0.704
GLYMA02G40650
Glycine max
GLYMA02G40650
I
0.704
VIT_11s0065g00310
Vitis vinifera
VIT_11s0065g00310
I
0.704
OS06G0702600
Oryza sativa
OS06G0702600
I
0.704
MP
Vitis vinifera
VIT_18s0001g13930
I
0.704
GLYMA14G38940
Glycine max
GLYMA14G38940
I
0.704
OBART06G26550
Oryza barthii
OBART06G26550
I
0.704
gene12224-v1.0-hybrid
Fragaria vesca
gene12224-v1.0-hybrid
I
0.704
GLYMA13G29320
Glycine max
GLYMA13G29320
I
0.704
BGIOSGA023559
Oryza indica
BGIOSGA023559
I
0.704
MDP0000211459
Malus domestica
MDP0000211459
I
0.704
LPERR06G22130
Leersia perrieri
LPERR06G22130
I
0.704
ORGLA06G0221800
Oryza glaberrima
ORGLA06G0221800
I
0.704
GSMUA_Achr3G10240_001
Musa acuminata
GSMUA_Achr3G10240_001
I
0.704
OGLUM06G27960
Oryza glumaepatula
OGLUM06G27960
I
0.704
LPERR08G17530
Leersia perrieri
LPERR08G17530
I
0.704
PDK_20s1410001g001
Phoenix dactylifera
PDK_20s1410001g001
I
0.701
PGSC0003DMG400002392
Solanum tuberosum
PGSC0003DMG400002392
I
0.701