CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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SapurV1A.2215s0010
(
Salix purpurea
)
BED ZF,GRAS
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF02892 (zf-BED)
PF03514 (GRAS)
IPR003656
IPR005202
SapurV1A.2215s0010
T025182_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
SapurV1A.2215s0010.1.p
GRAS
5
355
QFQKLMECAKAIEGGNLDVADSLLASIHSQASQEASKSTRKVVQYFAEALVRRAYGIRPLCPSRSPTSLFDPWEDMCQRFFEFASITTEDIIIDALNPGNKRLHIIDLSIMPGISSWTGFIHNLKVQYGGLQSVLITSVIPKRSNHSDQSSQEWNQKVRGVDLKWRQLIYNSPDDIVKCFSKLRRKRKDEMVVVNWDFILRKLLAQDGAIEQVLSKVKDLEADIMVIAEQEANLNSPDLLKRLEQSLQYYSTVFESLEQVDVTFMSWEMYFRRQIGNVVACEGIDRVERIESFDQWQHRLSQAGFCQVPLQAVHFDHDWLSSFEKMGIKHTDGHIQLSWHGFPLAVSSVWK
SapurV1A.2215s0010.1.p
BED ZF
679
726
SSVWDTFDKHQEENGEVWATCKHCKKKYRAESTKGTSNFHKHLRNCSP
SapurV1A.2215s0010.2.p
BED ZF
318
365
SSVWDTFDKHQEENGEVWATCKHCKKKYRAESTKGTSNFHKHLRNCSP
Links
Other
BED ZF,GRAS
family TFs
Other
Salix purpurea
TFs
6 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
XM_002322555.1
Populus trichocarpa
POPTR_0016s02680
N
0.795
SapurV1A.0362s0350
Salix purpurea
SapurV1A.0362s0350
N
0.795
XM_002333142.1
Populus trichocarpa
POPTR_0016s02730
N
0.767
SapurV1A.0362s0280
Salix purpurea
SapurV1A.0362s0280
N
0.762
SapurV1A.0430s0060
Salix purpurea
SapurV1A.0430s0060
N
0.711
POPTR_0016s02740
Populus trichocarpa
POPTR_0016s02740
N
0.705