Cagra.4396s0051 (Capsella grandiflora)
BED ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02892 (zf-BED) IPR003656 Cagra.4396s0051 T028211_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.4396s0051.1.p BED ZF 11 58
Cagra.4396s0051.1.p BED ZF 135 181
Cagra.4396s0051.2.p BED ZF 11 58
Cagra.4396s0051.2.p BED ZF 135 181

Links

Other BED ZF family TFs
Other Capsella grandiflora TFs

32 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Aquca_029_00055 Aquilegia coerulea Aquca_029_00055 N 0.881
AT3G17450 Arabidopsis thaliana AT3G17450 N 0.976
Bostr.19424s0919 Boechera stricta Bostr.19424s0919 N 1.000
Bo00763s120 Brassica oleracea Bo00763s120 N 0.938
PK21594.1 Cannabis sativa PK21594.1 N 0.869
Carubv10013083m.g Capsella rubella Carubv10013083m.g N 1.000
evm.TU.supercontig_519.2 Carica papaya evm.TU.supercontig_519.2 N 0.869
Ciclev10024195m.g Citrus clementina Ciclev10024195m.g N 0.869
orange1.1g044693m.g Citrus sinensis orange1.1g044693m.g N 0.869
Cucsa.252180 Cucumis sativus Cucsa.252180 N 0.917
Eucgr.B02527 Eucalyptus grandis Eucgr.B02527 N 0.845
Thhalv10020031m.g Eutrema salsugineum Thhalv10020031m.g N 1.000
gene22812-v1.0-hybrid Fragaria vesca gene22812-v1.0-hybrid N 0.881
GLYMA15G21351 Glycine max GLYMA15G21351 N 0.939
GLYMA09G09291 Glycine max GLYMA09G09291 N 0.940
Gorai.008G135400 Gossypium raimondii Gorai.008G135400 N 0.845
LjT35D18.120.nc Lotus japonicus LjT35D18.120.nc N 0.928
MDP0000314867 Malus domestica MDP0000314867 N 0.905
MDP0000133479 Malus domestica MDP0000133479 N 0.905
cassava36089.valid.m1 Manihot esculenta cassava36089.valid.m1 N 0.857
GSMUA_Achr3G12820_001 Musa acuminata GSMUA_Achr3G12820_001 N 0.917
POPTR_0002s18950 Populus trichocarpa POPTR_0002s18950 N 0.845
POPTR_0014s10940 Populus trichocarpa POPTR_0014s10940 N 0.880
Pm008491 Prunus mume Pm008491 N 0.893
PRUPE_ppa001126mg Prunus persica PRUPE_ppa001126mg N 0.893
29889.m003394 Ricinus communis 29889.m003394 N 0.964
SapurV1A.0014s0420 Salix purpurea SapurV1A.0014s0420 N 0.855
SapurV1A.0294s0300 Salix purpurea SapurV1A.0294s0300 N 0.880
TCM_004927 Theobroma cacao TCM_004927 N 0.869
TCM_021492 Theobroma cacao TCM_021492 N 0.940
VIT_05s0020g00790 Vitis vinifera VIT_05s0020g00790 N 0.976