CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pavir.J09771
(
Panicum virgatum
)
BED ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF02892 (zf-BED)
IPR003656
Pavir.J09771
T028561_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pavir.J09771.1.p
BED ZF
58
104
SKVWNEFSKIRVGGIVTKGQCKHCNSEISAKRGAETSAMSTHLKRCK
Links
Other
BED ZF
family TFs
Other
Panicum virgatum
TFs
8 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Pavir.J34397
Panicum virgatum
Pavir.J34397
N
0.952
Sb05g007235
Sorghum bicolor
Sb05g007235
N
0.881
Pavir.J22955
Panicum virgatum
Pavir.J22955
N
0.857
Pavir.J08599
Panicum virgatum
Pavir.J08599
N
0.857
Sb05g006263
Sorghum bicolor
Sb05g006263
N
0.857
Pavir.J09561
Panicum virgatum
Pavir.J09561
N
0.810
Pavir.Aa02803
Panicum virgatum
Pavir.Aa02803
N
0.810
Pavir.J21906
Panicum virgatum
Pavir.J21906
N
0.800