CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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augustus_masked-nMf.1.1.scaf26696-processed-gene-0.0
(
Meloidogyne floridensis
)
BED ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF02892 (zf-BED)
IPR003656
augustus_masked-nMf.1.1.scaf26696-processed-gene-0.0
T029268_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
augustus_masked-nMf.1.1.scaf26696-processed-gene-0.0-mRNA-1
BED ZF
5
55
IWQIGLFQRLEGNNKEAICKLCIENKEKKYTFSVNNFTTTNLVYHLKSKHK
Links
Other
BED ZF
family TFs
Other
Meloidogyne floridensis
TFs
3 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Minc06713
Meloidogyne incognita
Minc06713
N
1.000
MhA1_Contig794.frz3.gene4
Meloidogyne hapla
MhA1_Contig794.frz3.gene4
N
0.950
Minc17932
Meloidogyne incognita
Minc17932
N
0.929