CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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arnt
(
Danio rerio
)
bHLH
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00010 (HLH)
IPR001092
ENSDARG00000021855
T033660_2.00
Ensembl (2018-Dec-8)
Link out
NCBI Gene Info:
Enables sequence-specific DNA binding activity. Acts upstream of or within several processes, including positive regulation of transcription, DNA-templated; regulation of signal transduction; and response to toxic substance. Predicted to be located in cytoplasm. Predicted to be part of aryl hydrocarbon receptor complex. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in renal cell carcinoma. Orthologous to human ARNT (aryl hydrocarbon receptor nuclear translocator). [provided by Alliance of Genome Resources, Apr 2022]
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Arnt
M01719_2.00
Mus musculus
NNKCACGTGMNN
NNKCACGTGMNN
PBM
Weirauch et al.(2014)
pTH5111
0.884
0.981
ARNT
M08732_2.00
Homo sapiens
NKRCGTGMN
NKCACGYMN
Misc
Kulakovskiy et al.(2013)
ARNT_HUMAN.H11MO.0.B
0.884
0.981
ARNT
M09459_2.00
Homo sapiens
KCACGTNN
NNACGTGM
Misc
Heinz et al.(2010)
T47D-HIF1b_GSE59937
0.884
0.981
ARNT
M09863_2.00
Homo sapiens
NVNNNCACGTGNHHHN
NDDDNCACGTGNNNBN
Transfac
Matys et al.(2006)
V$ARNT_01
0.884
0.981
ARNT
M09864_2.00
Homo sapiens
VVNNNRKCACGTGMYNNNBB
VVNNNRKCACGTGMYNNNBB
Transfac
Matys et al.(2006)
V$ARNT_02
0.884
0.981
ARNT
M09865_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$ARNT_Q6_01
0.884
0.981
ARNT
M09866_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$ARNT_Q6
0.884
0.981
tgo
M06005_2.00
Drosophila melanogaster
RDDTCGTGAYY
RRTCACGAHHY
B1H
Zhu et al.(2011)
dys_tgo_SANGER_5_FBgn0015014
0.884
0.907
tgo
M06006_2.00
Drosophila melanogaster
SDTTGCGTGAC
GTCACGCAAHS
B1H
Zhu et al.(2011)
ss_tgo_SANGER_10_FBgn0015014
0.884
0.907
tgo
M06007_2.00
Drosophila melanogaster
KCACGTGAC
GTCACGTGM
B1H
Zhu et al.(2011)
tgo_cyc_SANGER_5_FBgn0015014
0.884
0.907
tgo
M06008_2.00
Drosophila melanogaster
RTACGTGAC
GTCACGTAY
B1H
Zhu et al.(2011)
tgo_sima_SANGER_5_FBgn0015014
0.884
0.907
tgo
M06009_2.00
Drosophila melanogaster
VWACGTGACY
RGTCACGTWB
B1H
Zhu et al.(2011)
tgo_sim_SANGER_5_FBgn0015014
0.884
0.907
tgo
M06010_2.00
Drosophila melanogaster
TGCGTGAC
GTCACGCA
B1H
Zhu et al.(2011)
tgo_ss_SANGER_5_FBgn0015014
0.884
0.907
tgo
M06011_2.00
Drosophila melanogaster
RCACGTGAC
GTCACGTGY
B1H
Zhu et al.(2011)
tgo_tai_SANGER_5_FBgn0015014
0.884
0.907
tgo
M06012_2.00
Drosophila melanogaster
VTACGTGACB
VGTCACGTAB
B1H
Zhu et al.(2011)
tgo_trh_SANGER_5_FBgn0015014
0.884
0.907
For this family, TFs with SR scores >
0.838
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSDARP00000028315
bHLH
64
117
ARENHSEIERRRRNKMTAYITELSDMVPACSALARKPDKLTILRMAVSHMKSLR
ENSDARP00000076292
bHLH
64
117
ARENHSEIERRRRNKMTAYITELSDMVPACSALARKPDKLTILRMAVSHMKSLR
ENSDARP00000107928
bHLH
64
117
ARENHSEIERRRRNKMTAYITELSDMVPACSALARKPDKLTILRMAVSHMKSLR
ENSDARP00000110017
bHLH
64
117
ARENHSEIERRRRNKMTAYITELSDMVPACSALARKPDKLTILRMAVSHMKSLR
ENSDARP00000112110
bHLH
64
117
ARENHSEIERRRRNKMTAYITELSDMVPACSALARKPDKLTILRMAVSHMKSLR
Links
Other
bHLH
family TFs
Other
Danio rerio
TFs
123 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy