ENSLACG00000003485 (Latimeria chalumnae)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 ENSLACG00000003485 T034796_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Tcf4
M01750_2.00
Mus musculus
VCAGVTGBN

NVCABCTGB
PBM
Weirauch et al.(2014)
pTH5101
0.914 1.000
TCF4
M02807_2.00
Homo sapiens
HRCACCTGBN

NVCAGGTGYD
SELEX
Jolma et al.(2013)
TCF4_1
0.914 1.000
TCF4
M02808_2.00
Homo sapiens
NVCACCTBBN

NVVAGGTGBN
SELEX
Jolma et al.(2013)
TCF4_2
0.914 1.000
TCF4
M02728_2.00
Homo sapiens
RCACCTG

CAGGTGY
SELEX
Jolma et al.(2010)
TCF4_dimer
0.914 1.000
TCF4
M04214_2.00
Homo sapiens
VCACCTGB

VCAGGTGB
SELEX
Yin et al.(2017)
TCF4_eDBD_HT-SELEX
0.914 1.000
Tcf4
M08775_2.00
Mus musculus
HRCACCTGB

VCAGGTGYD
Misc
Kulakovskiy et al.(2013)
ITF2_MOUSE.H11MO.0.B
0.914 1.000
TCF4
M09461_2.00
Homo sapiens
ASWTCAAAGRVN

NBYCTTTGAWST
Misc
Heinz et al.(2010)
Hct116-Tcf4_SRA012054
0.914 1.000
TCF4
M04215_2.00
Homo sapiens
VCACCTGN

NCAGGTGB
SELEX
Yin et al.(2017)
TCF4_eDBD_Methyl-HT-SELEX
0.914 1.000
Tcf12
M01740_2.00
Mus musculus
NVCAYCTGB

VCAGRTGBN
PBM
Weirauch et al.(2014)
pTH5071
0.912 0.962
TCF12
M04137_2.00
Homo sapiens
VCACSTGB

VCASGTGB
SELEX
Yin et al.(2017)
TCF12_eDBD_HT-SELEX
0.912 0.962
Tcf12
M08062_2.00
Mus musculus
RRCAGCTGNNN

NNNCAGCTGYY
ChIP-seq
Mathelier et al.(2014)
MA0521.1
0.912 0.962
TCF12
M07805_2.00
Homo sapiens
NVDSCAGSTGB

VCASCTGSHBN
ChIP-seq
Gerstein et al.(2012)
GM12878_TCF12_HudsonAlpha
0.912 0.962
TCF12
M07806_2.00
Homo sapiens
VCASCTGB

VCAGSTGB
ChIP-seq
Gerstein et al.(2012)
H1-hESC_TCF12_HudsonAlpha
0.912 0.962
TCF12
M08731_2.00
Homo sapiens
CMCASCTGSH

DSCAGSTGKG
Misc
Kulakovskiy et al.(2013)
HTF4_HUMAN.H11MO.0.A
0.912 0.962
Tcf12
M08762_2.00
Mus musculus
VMCASCTGSH

DSCAGSTGKB
Misc
Kulakovskiy et al.(2013)
HTF4_MOUSE.H11MO.0.A
0.912 0.962
TCF12
M09458_2.00
Homo sapiens
NNVCAGCTGB

VCAGCTGBNN
Misc
Heinz et al.(2010)
GM12878-Tcf12_GSE32465
0.912 0.962
TCF12
M09858_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HEB_Q6
0.912 0.962
TCF12
M09859_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HTF4_Q2
0.912 0.962
TCF12
M09860_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TCF12_01
0.912 0.962
TCF12
M09861_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TCF12_03
0.912 0.962
TCF12
M09862_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TCF12_05
0.912 0.962
TCF12
M04138_2.00
Homo sapiens
NCAYCTGN

NCAGRTGN
SELEX
Yin et al.(2017)
TCF12_eDBD_Methyl-HT-SELEX
0.912 0.962
Tcf3
M00753_2.00
Mus musculus
VCACCTGBN

NVCAGGTGB
PBM
Weirauch et al.(2013)
pTH3866
0.912 0.885
Tcf3
M01723_2.00
Mus musculus
NNVCACSTGB

VCASGTGBNN
PBM
Weirauch et al.(2014)
pTH4580
0.912 0.885
Tcf3
M00118_2.00
Mus musculus
VCAYCTGB

VCAGRTGB
PBM
Badis et al.(2009)
Tcfe2a_3865
0.912 0.885
Tcf3
M09465_2.00
Mus musculus
ABWTCAAAGS

SCTTTGAWVT
Misc
Heinz et al.(2010)
mES-Tcf3_GSE11724
0.884 0.923
Tcf3
M09466_2.00
Mus musculus
VCAGCTGBNN

NNVCAGCTGB
Misc
Heinz et al.(2010)
proBcell-E2A_GSE21978
0.884 0.923
Tcf3
M09886_2.00
Mus musculus Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$E47_05
0.884 0.923
TCF3
M02775_2.00
Homo sapiens
NVCACCTGBN

NVCAGGTGBN
SELEX
Jolma et al.(2013)
TCF3_1
0.884 0.885
TCF3
M08710_2.00
Homo sapiens
VVCASCTGCHN

NDGCAGSTGBB
Misc
Kulakovskiy et al.(2013)
TFE2_HUMAN.H11MO.0.A
0.884 0.885
TCF3
M09791_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$E12_Q6
0.884 0.885
TCF3
M09792_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$E2A_Q6_01
0.884 0.885
TCF3
M09793_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$E2A_Q6_02
0.884 0.885
TCF3
M09794_2.00
Homo sapiens
VVVVMCACCTGCNBB

VVNGCAGGTGKBBBB
Transfac
Matys et al.(2006)
V$E47_01
0.884 0.885
TCF3
M09795_2.00
Homo sapiens
NNKWRCACCTGYDNNN

NNNHRCAGGTGYWMNN
Transfac
Matys et al.(2006)
V$E47_02
0.884 0.885
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSLACP00000003912 bHLH 599 652
ENSLACP00000003915 bHLH 408 461
ENSLACP00000021847 bHLH 426 479

Links

Other bHLH family TFs
Other Latimeria chalumnae TFs

213 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AGABI2DRAFT_184667 Agaricus bisporus AGABI2DRAFT_184667 N 0.000
M378DRAFT_100731 Amanita muscaria M378DRAFT_100731 N 0.000
BOTBODRAFT_109681 Botryobasidium botryosum BOTBODRAFT_109681 N 0.000
CC1G_01258 Coprinopsis cinerea CC1G_01258 N 0.000
FIBRA_03754 Fibroporia radiculosa FIBRA_03754 N 0.000
FOMPIDRAFT_1022188 Fomitopsis pinicola FOMPIDRAFT_1022188 N 0.000
GALMADRAFT_235749 Galerina marginata GALMADRAFT_235749 N 0.000
GLOTRDRAFT_103597 Gloeophyllum trabeum GLOTRDRAFT_103597 N 0.000
M413DRAFT_441044 Hebeloma cylindrosporum M413DRAFT_441044 N 0.000
EuGene4000825 Heterobasidion annosum EuGene4000825 N 0.000
HETIRDRAFT_472864 Heterobasidion irregulare HETIRDRAFT_472864 N 0.000
JAAARDRAFT_64581 Jaapia argillacea JAAARDRAFT_64581 N 0.000
K443DRAFT_85103 Laccaria amethystina K443DRAFT_85103 N 0.000
Moror_17594 Moniliophthora roreri Moror_17594 N 0.000
PAXRUDRAFT_251978 Paxillus rubicundulus PAXRUDRAFT_251978 N 0.000
PHACADRAFT_250321 Phanerochaete carnosa PHACADRAFT_250321 N 0.000
fgenesh1_pg.C_scaffold_2000388 Phanerochaete chrysosporium fgenesh1_pg.C_scaffold_2000388 N 0.000
PHLGIDRAFT_113414 Phlebiopsis gigantea PHLGIDRAFT_113414 N 0.000
PILCRDRAFT_811544 Piloderma croceum PILCRDRAFT_811544 N 0.000
M404DRAFT_993745 Pisolithus tinctorius M404DRAFT_993745 N 0.000
PLEOSDRAFT_1112138 Pleurotus ostreatus PLEOSDRAFT_1112138 N 0.000
POSPLDRAFT_101665 Postia placenta POSPLDRAFT_101665 N 0.000
V565_053000 Rhizoctonia solani V565_053000 N 0.000
SCLCIDRAFT_892513 Scleroderma citrinum SCLCIDRAFT_892513 N 0.000
M408DRAFT_326334 Serendipita vermifera M408DRAFT_326334 N 0.000
SERLA73DRAFT_177248 Serpula lacrymans SERLA73DRAFT_177248 N 0.000
M407DRAFT_166757 Tulasnella calospora M407DRAFT_166757 N 0.000