CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Hif3a
(
Mus musculus
)
bHLH
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00010 (HLH)
IPR001092
ENSMUSG00000004328
T035658_2.00
Ensembl (2018-Dec-8)
Link out
NCBI Gene Info:
Enables DNA binding activity and DNA-binding transcription factor activity. Acts upstream of or within response to hypoxia and transcription by RNA polymerase II. Located in mitochondrion and nuclear speck. Is expressed in several structures, including central nervous system; genitourinary system; and lung. Orthologous to human HIF3A (hypoxia inducible factor 3 subunit alpha). [provided by Alliance of Genome Resources, Apr 2022]
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Hif3a
M09885_2.00
Mus musculus
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$MOP7_01
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
For this family, TFs with SR scores >
0.838
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSMUSP00000048248
bHLH
13
66
RKEKSRDAARSRRSQETEVLYQLAHTLPFARGVSAHLDKASIMRLTISYLRMHR
ENSMUSP00000104132
bHLH
15
68
RKEKSRDAARSRRSQETEVLYQLAHTLPFARGVSAHLDKASIMRLTISYLRMHR
ENSMUSP00000117728
bHLH
15
68
RKEKSRDAARSRRSQETEVLYQLAHTLPFARGVSAHLDKASIMRLTISYLRMHR
Links
Other
bHLH
family TFs
Other
Mus musculus
TFs
31 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
ENSOCUG00000008675
Oryctolagus cuniculus
ENSOCUG00000008675
I
0.914
HIF3A
Otolemur garnettii
ENSOGAG00000008187
I
0.914
ENSNLEG00000002481
Nomascus leucogenys
ENSNLEG00000002481
I
0.914
HIF3A
Macaca mulatta
ENSMMUG00000000215
I
0.914
HIF3A
Pan troglodytes
ENSPTRG00000011180
I
0.914
HIF3A
Pteropus vampyrus
ENSPVAG00000003553
I
0.914
ENSTSYG00000009179
Tarsius syrichta
ENSTSYG00000009179
I
0.914
ENSBTAP00000025217-D1
Bos grunniens
ENSBTAP00000025217-D1
I
0.914
ENSSTOG00000011980
Ictidomys tridecemlineatus
ENSSTOG00000011980
I
0.914
ENSSHAG00000004128
Sarcophilus harrisii
ENSSHAG00000004128
I
0.914
Hif3a
Rattus norvegicus
ENSRNOG00000017198
I
0.914
HIF3A
Myotis lucifugus
ENSMLUG00000014423
I
0.914
ENSMPUG00000005285
Mustela putorius furo
ENSMPUG00000005285
I
0.914
HIF3A
Dasypus novemcinctus
ENSDNOG00000031903
I
0.914
HIF3A
Microcebus murinus
ENSMICG00000016033
I
0.914
HIF3A
Cavia porcellus
ENSCPOG00000024199
I
0.914
HIF3A
Callithrix jacchus
ENSCJAG00000012019
I
0.914
HIF3A
Bos taurus
ENSBTAG00000018948
I
0.914
HIF3A
Equus caballus
ENSECAG00000020693
I
0.914
Hif3a
Dipodomys ordii
ENSDORG00000004664
I
0.914
HIF3A
Felis catus
ENSFCAG00000014181
I
0.914
HIF3A
Loxodonta africana
ENSLAFG00000017230
I
0.914
ENSMEUG00000002474
Macropus eugenii
ENSMEUG00000002474
I
0.914
HIF3A
Homo sapiens
ENSG00000124440
I
0.914
HIF3A
Gorilla gorilla
ENSGGOG00000007551
I
0.914
HIF3A
Tursiops truncatus
ENSTTRG00000001609
I
0.890
Pvit_16921
Pogona vitticeps
Pvit_16921
I
0.843
Ogr11102
Ophisaurus gracilis
Ogr11102
I
0.843
Cmyd_10005581
Chelonia mydas
Cmyd_10005581
I
0.843
HIF3A
Anolis carolinensis
ENSACAG00000016766
I
0.843