fgenesh2_kg.2__1138__AT1G68810.1 (Arabidopsis lyrata)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 fgenesh2_kg.2__1138__AT1G68810.1 T039114_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PK07858.1
M01123_2.00
Cannabis sativa
HCACGTGB

VCACGTGD
PBM
Lambert et al.(2019)
pTH11370
0.884 0.960
e_gw1.209.40.1
M01756_2.00
Physcomitrella patens
NNCACGTGNN

NNCACGTGNN
PBM
Weirauch et al.(2014)
pTH8070
0.853 0.500
LRL2
M06738_2.00
Arabidopsis thaliana
CACGTGSVDMNCACG

CGTGNKHBSCACGTG
Dap-seq
OMalley et al.(2016)
bHLH69_col_a
0.853 0.500
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_kg.2__1138__AT1G68810.1 bHLH 166 215

Links

Other bHLH family TFs
Other Arabidopsis lyrata TFs

263 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
LRL2 Arabidopsis thaliana AT4G30980 D 0.853
PK07858.1 Cannabis sativa PK07858.1 D 0.884
e_gw1.209.40.1 Physcomitrella patens e_gw1.209.40.1 D 0.853
cassava16550.m1 Manihot esculenta cassava16550.m1 I 0.884
30068.m002581 Ricinus communis 30068.m002581 I 0.850
29738.m001043 Ricinus communis 29738.m001043 I 0.884
29737.m001209 Ricinus communis 29737.m001209 I 0.853
Pm029004 Prunus mume Pm029004 I 0.884
Pm027715 Prunus mume Pm027715 I 0.853
Cla020671 Citrullus lanatus Cla020671 I 0.884
Cla019007 Citrullus lanatus Cla019007 I 0.853
Cla013823 Citrullus lanatus Cla013823 I 0.853
Cla000223 Citrullus lanatus Cla000223 I 0.914
Ca_24775 Cicer arietinum Ca_24775 I 0.914
Ca_08440 Cicer arietinum Ca_08440 I 0.884
Ca_03340 Cicer arietinum Ca_03340 I 0.853
cassava22164.valid.m1 Manihot esculenta cassava22164.valid.m1 I 0.853
cassava22165.valid.m1 Manihot esculenta cassava22165.valid.m1 I 0.853
cassava46299.m1 Manihot esculenta cassava46299.m1 I 0.884
Aquca_081_00012 Aquilegia coerulea Aquca_081_00012 I 0.849
Aquca_016_00200 Aquilegia coerulea Aquca_016_00200 I 0.853
Aquca_004_00748 Aquilegia coerulea Aquca_004_00748 I 0.842
Aquca_002_01095 Aquilegia coerulea Aquca_002_01095 I 0.884
mgf017635m Mimulus guttatus mgf017635m I 0.884
mgf014585m Mimulus guttatus mgf014585m I 0.853
mgf009435m Mimulus guttatus mgf009435m I 0.853
mgf001459m Mimulus guttatus mgf001459m I 0.853
mg025182m Mimulus guttatus mg025182m I 0.840
e_gw1.173.38.1 Physcomitrella patens e_gw1.173.38.1 I 0.853
Cucsa.350940 Cucumis sativus Cucsa.350940 I 0.853
Cucsa.283920 Cucumis sativus Cucsa.283920 I 0.884
Cucsa.132830 Cucumis sativus Cucsa.132830 I 0.853
VIT_11s0037g00040 Vitis vinifera VIT_11s0037g00040 I 0.853
VIT_08s0040g01240 Vitis vinifera VIT_08s0040g01240 I 0.842
Si017553m.g Setaria italica Si017553m.g I 0.853
Si013911m.g Setaria italica Si013911m.g I 0.870
SELMODRAFT_56610 Selaginella moellendorffii SELMODRAFT_56610 I 0.884
SELMODRAFT_46532 Selaginella moellendorffii SELMODRAFT_46532 I 0.884
SELMODRAFT_444782 Selaginella moellendorffii SELMODRAFT_444782 I 0.853
SELMODRAFT_422025 Selaginella moellendorffii SELMODRAFT_422025 I 0.853
SELMODRAFT_417246 Selaginella moellendorffii SELMODRAFT_417246 I 0.894
Sb02g024750 Sorghum bicolor Sb02g024750 I 0.853
SELMODRAFT_412681 Selaginella moellendorffii SELMODRAFT_412681 I 0.894
SELMODRAFT_24892 Selaginella moellendorffii SELMODRAFT_24892 I 0.841
SELMODRAFT_24890 Selaginella moellendorffii SELMODRAFT_24890 I 0.841
Sb10g005650 Sorghum bicolor Sb10g005650 I 0.853
Sb07g021170 Sorghum bicolor Sb07g021170 I 0.870
Si029708m.g Setaria italica Si029708m.g I 0.853
Si039730m.g Setaria italica Si039730m.g I 0.894
Solyc04g006990.2 Solanum lycopersicum Solyc04g006990.2 I 0.914
VIT_01s0011g02940 Vitis vinifera VIT_01s0011g02940 I 0.884
TRIUR3_33768 Triticum urartu TRIUR3_33768 I 0.853
TRIUR3_31897 Triticum urartu TRIUR3_31897 I 0.894
Traes_6AL_FD6EC5EA9 Triticum aestivum Traes_6AL_FD6EC5EA9 I 0.853
Traes_4DL_7BD3165FB Triticum aestivum Traes_4DL_7BD3165FB I 0.894
Traes_4BL_A2B32FCEE Triticum aestivum Traes_4BL_A2B32FCEE I 0.894
Traes_4AS_DD16F89E7 Triticum aestivum Traes_4AS_DD16F89E7 I 0.894
TCM_037077 Theobroma cacao TCM_037077 I 0.853
TCM_011873 Theobroma cacao TCM_011873 I 0.884
Solyc12g010170.1 Solanum lycopersicum Solyc12g010170.1 I 0.853
Solyc07g005400.2 Solanum lycopersicum Solyc07g005400.2 I 0.865
Solyc05g009880.2 Solanum lycopersicum Solyc05g009880.2 I 0.914
Solyc04g078690.2 Solanum lycopersicum Solyc04g078690.2 I 0.840
Sb04g035890 Sorghum bicolor Sb04g035890 I 0.853
chr6.CM0037.770.nc Lotus japonicus chr6.CM0037.770.nc I 0.853
Pavir.Ba01914 Panicum virgatum Pavir.Ba01914 I 0.853
Pavir.Ab03158 Panicum virgatum Pavir.Ab03158 I 0.853
Pavir.Aa00205 Panicum virgatum Pavir.Aa00205 I 0.853
orange1.1g037785m.g Citrus sinensis orange1.1g037785m.g I 0.884
orange1.1g026943m.g Citrus sinensis orange1.1g026943m.g I 0.852
orange1.1g022782m.g Citrus sinensis orange1.1g022782m.g I 0.840
orange1.1g012156m.g Citrus sinensis orange1.1g012156m.g I 0.853
MDP0000606021 Malus domestica MDP0000606021 I 0.840
MDP0000534784 Malus domestica MDP0000534784 I 0.853
MDP0000319726 Malus domestica MDP0000319726 I 0.884
MDP0000271420 Malus domestica MDP0000271420 I 0.884
MDP0000121522 Malus domestica MDP0000121522 I 0.853
Lus10041493.g Linum usitatissimum Lus10041493.g I 0.870
Pavir.Bb02117 Panicum virgatum Pavir.Bb02117 I 0.853
Pavir.Da02078 Panicum virgatum Pavir.Da02078 I 0.853
Pavir.Ib01099 Panicum virgatum Pavir.Ib01099 I 0.894
chr2.CM0749.390.nc Lotus japonicus chr2.CM0749.390.nc I 0.914
PK14040.1 Cannabis sativa PK14040.1 I 0.853
Thhalv10025656m.g Eutrema salsugineum Thhalv10025656m.g I 0.853
Thhalv10018758m.g Eutrema salsugineum Thhalv10018758m.g I 0.914
Thhalv10014212m.g Eutrema salsugineum Thhalv10014212m.g I 0.853
Thhalv10004524m.g Eutrema salsugineum Thhalv10004524m.g I 0.894
Thhalv10000220m.g Eutrema salsugineum Thhalv10000220m.g I 0.853
SapurV1A.3056s0010 Salix purpurea SapurV1A.3056s0010 I 0.884
SapurV1A.0347s0080 Salix purpurea SapurV1A.0347s0080 I 0.853
SapurV1A.0304s0070 Salix purpurea SapurV1A.0304s0070 I 0.884
SapurV1A.0100s0120 Salix purpurea SapurV1A.0100s0120 I 0.853
SapurV1A.0079s0530 Salix purpurea SapurV1A.0079s0530 I 0.884
Pavir.J04712 Panicum virgatum Pavir.J04712 I 0.853
Lus10035056.g Linum usitatissimum Lus10035056.g I 0.884
Lus10034271.g Linum usitatissimum Lus10034271.g I 0.870
Carubv10023532m.g Capsella rubella Carubv10023532m.g I 0.853
Carubv10020515m.g Capsella rubella Carubv10020515m.g I 0.914
Carubv10017470m.g Capsella rubella Carubv10017470m.g I 0.894
Carubv10005248m.g Capsella rubella Carubv10005248m.g I 0.853
Cagra.4091s0032 Capsella grandiflora Cagra.4091s0032 I 0.853
Cagra.2848s0086 Capsella grandiflora Cagra.2848s0086 I 0.853
Cagra.1157s0003 Capsella grandiflora Cagra.1157s0003 I 0.914
Cagra.0417s0002 Capsella grandiflora Cagra.0417s0002 I 0.894
Cagra.0380s0028 Capsella grandiflora Cagra.0380s0028 I 0.853
Bostr.7867s0954 Boechera stricta Bostr.7867s0954 I 0.853
Bostr.27895s0056 Boechera stricta Bostr.27895s0056 I 0.853
Bostr.26959s0001 Boechera stricta Bostr.26959s0001 I 0.914
Bostr.26833s0448 Boechera stricta Bostr.26833s0448 I 0.853
Carubv10028492m.g Capsella rubella Carubv10028492m.g I 0.853
Ciclev10008192m.g Citrus clementina Ciclev10008192m.g I 0.853
Ciclev10020323m.g Citrus clementina Ciclev10020323m.g I 0.852
Lus10021846.g Linum usitatissimum Lus10021846.g I 0.853
Lus10021711.g Linum usitatissimum Lus10021711.g I 0.884
Gorai.013G079600 Gossypium raimondii Gorai.013G079600 I 0.884
Gorai.009G055200 Gossypium raimondii Gorai.009G055200 I 0.853
Gorai.008G186700 Gossypium raimondii Gorai.008G186700 I 0.884
gene10062-v1.0-hybrid Fragaria vesca gene10062-v1.0-hybrid I 0.853
evm.TU.supercontig_53.118 Carica papaya evm.TU.supercontig_53.118 I 0.884
evm.TU.supercontig_1892.1 Carica papaya evm.TU.supercontig_1892.1 I 0.850
evm.TU.contig_30708.1 Carica papaya evm.TU.contig_30708.1 I 0.853
Eucgr.G02351 Eucalyptus grandis Eucgr.G02351 I 0.884
Eucgr.C02592 Eucalyptus grandis Eucgr.C02592 I 0.853
Eucgr.C00360 Eucalyptus grandis Eucgr.C00360 I 0.853
Ciclev10031900m.g Citrus clementina Ciclev10031900m.g I 0.884
Bostr.0556s0241 Boechera stricta Bostr.0556s0241 I 0.894
GSMUA_Achr7G07280_001 Musa acuminata GSMUA_Achr7G07280_001 I 0.894
GLYMA15G33020 Glycine max GLYMA15G33020 I 0.853
GLYMA10G34910 Glycine max GLYMA10G34910 I 0.884
GLYMA09G14380 Glycine max GLYMA09G14380 I 0.853
GLYMA02G36380 Glycine max GLYMA02G36380 I 0.853
GLYMA02G11190 Glycine max GLYMA02G11190 I 0.914
GLYMA01G22530 Glycine max GLYMA01G22530 I 0.914
LRL2 Arabidopsis lyrata fgenesh2_kg.7__1084__AT4G30980.1 I 0.853
BHLH32 Arabidopsis lyrata fgenesh2_kg.5__324__AT3G25710.1 I 0.894
LRL1 Arabidopsis lyrata fgenesh2_kg.4__341__AT2G24260.1 I 0.853
LRL3 Arabidopsis lyrata fgenesh1_pm.C_scaffold_8001435 I 0.853
F775_10096 Aegilops tauschii F775_10096 I 0.894
BRADI1G67500 Brachypodium distachyon BRADI1G67500 I 0.894
BRADI1G47350 Brachypodium distachyon BRADI1G47350 I 0.853
GLYMA17G08300 Glycine max GLYMA17G08300 I 0.853
GLYMA17G19570 Glycine max GLYMA17G19570 I 0.840
GLYMA20G32660 Glycine max GLYMA20G32660 I 0.884
GSMUA_Achr6G30610_001 Musa acuminata GSMUA_Achr6G30610_001 I 0.894
GSMUA_Achr4G01910_001 Musa acuminata GSMUA_Achr4G01910_001 I 0.853
GSMUA_Achr3G04630_001 Musa acuminata GSMUA_Achr3G04630_001 I 0.853
GSMUA_Achr1G21280_001 Musa acuminata GSMUA_Achr1G21280_001 I 0.864
GSMUA_Achr11G13440_001 Musa acuminata GSMUA_Achr11G13440_001 I 0.864
GSMUA_Achr10G30710_001 Musa acuminata GSMUA_Achr10G30710_001 I 0.853
GSMUA_Achr10G24090_001 Musa acuminata GSMUA_Achr10G24090_001 I 0.853
GRMZM2G526668 Zea mays GRMZM2G526668 I 0.870
GRMZM2G350165 Zea mays GRMZM2G350165 I 0.841
GRMZM2G107276 Zea mays GRMZM2G107276 I 0.870
GRMZM2G067654 Zea mays GRMZM2G067654 I 0.853
GRMZM2G043854 Zea mays GRMZM2G043854 I 0.894
GRMZM2G027563 Zea mays GRMZM2G027563 I 0.853
Bra032111 Brassica rapa Bra032111 I 0.853
Bra026510 Brassica rapa Bra026510 I 0.894
Bra025158 Brassica rapa Bra025158 I 0.894
Bo2g028920 Brassica oleracea Bo2g028920 I 0.853
Bo1g011740 Brassica oleracea Bo1g011740 I 0.853
BGIOSGA029777 Oryza indica BGIOSGA029777 I 0.870
BGIOSGA029759 Oryza indica BGIOSGA029759 I 0.853
BGIOSGA026937 Oryza indica BGIOSGA026937 I 0.870
BGIOSGA021777 Oryza indica BGIOSGA021777 I 0.853
BHLH82 Arabidopsis thaliana AT5G58010 I 0.853
BHLH32 Arabidopsis thaliana AT3G25710 I 0.894
BHLH66 Arabidopsis thaliana AT2G24260 I 0.853
BHLH30 Arabidopsis thaliana AT1G68810 I 0.914
AMTR_s00101p00150740 Amborella trichopoda AMTR_s00101p00150740 I 0.839
AMTR_s00065p00184910 Amborella trichopoda AMTR_s00065p00184910 I 0.853
AMTR_s00010p00144270 Amborella trichopoda AMTR_s00010p00144270 I 0.894
Bo2g138630 Brassica oleracea Bo2g138630 I 0.894
Bo3g018990 Brassica oleracea Bo3g018990 I 0.853
AMTR_s00002p00019320 Amborella trichopoda AMTR_s00002p00019320 I 0.883
Bra020398 Brassica rapa Bra020398 I 0.853
Bra011237 Brassica rapa Bra011237 I 0.853
Bra007863 Brassica rapa Bra007863 I 0.853
Bra006788 Brassica rapa Bra006788 I 0.853
Bra004338 Brassica rapa Bra004338 I 0.914
Bra004015 Brassica rapa Bra004015 I 0.914
Bra002679 Brassica rapa Bra002679 I 0.853
Bo9g133640 Brassica oleracea Bo9g133640 I 0.853
Bo8g099910 Brassica oleracea Bo8g099910 I 0.853
Bo7g081980 Brassica oleracea Bo7g081980 I 0.894
Bo6g108270 Brassica oleracea Bo6g108270 I 0.914
Bo6g095860 Brassica oleracea Bo6g095860 I 0.890
Bo4g154370 Brassica oleracea Bo4g154370 I 0.853
AMTR_s00007p00170710 Amborella trichopoda AMTR_s00007p00170710 I 0.840
ONIVA02G37880 Oryza nivara ONIVA02G37880 I 0.853
ORUFI06G05560 Oryza rufipogon ORUFI06G05560 I 0.853
ORUFI03G11650 Oryza rufipogon ORUFI03G11650 I 0.894
ORUFI02G37320 Oryza rufipogon ORUFI02G37320 I 0.853
ORGLA08G0137400 Oryza glaberrima ORGLA08G0137400 I 0.870
ORGLA02G0311000 Oryza glaberrima ORGLA02G0311000 I 0.853
OPUNC08G13730 Oryza punctata OPUNC08G13730 I 0.870
ONIVA09G10010 Oryza nivara ONIVA09G10010 I 0.853
ONIVA09G09550 Oryza nivara ONIVA09G09550 I 0.870
ONIVA08G16750 Oryza nivara ONIVA08G16750 I 0.870
ONIVA06G06250 Oryza nivara ONIVA06G06250 I 0.853
ONIVA03G12280 Oryza nivara ONIVA03G12280 I 0.894
PGSC0003DMG400011133 Solanum tuberosum PGSC0003DMG400011133 I 0.853
OMERI09G07780 Oryza meridionalis OMERI09G07780 I 0.870
ORUFI08G17560 Oryza rufipogon ORUFI08G17560 I 0.870
ORUFI09G10670 Oryza rufipogon ORUFI09G10670 I 0.870
Sb01g040450 Sorghum bicolor Sb01g040450 I 0.894
PRUPE_ppa019406mg Prunus persica PRUPE_ppa019406mg I 0.884
PRUPE_ppa005254mg Prunus persica PRUPE_ppa005254mg I 0.853
POPTR_0018s11800 Populus trichocarpa POPTR_0018s11800 I 0.853
POPTR_0010s14010 Populus trichocarpa POPTR_0010s14010 I 0.884
POPTR_0008s11490 Populus trichocarpa POPTR_0008s11490 I 0.884
PGSC0003DMG400007827 Solanum tuberosum PGSC0003DMG400007827 I 0.853
PGSC0003DMG400007457 Solanum tuberosum PGSC0003DMG400007457 I 0.884
PGSC0003DMG400000824 Solanum tuberosum PGSC0003DMG400000824 I 0.914
OS09G0410700 Oryza sativa OS09G0410700 I 0.870
OS08G0432800 Oryza sativa OS08G0432800 I 0.870
OS06G0184000 Oryza sativa OS06G0184000 I 0.853
OS03G0260600 Oryza sativa OS03G0260600 I 0.894
OMERI08G12930 Oryza meridionalis OMERI08G12930 I 0.870
OLONG_004075 Oryza longistaminata OLONG_004075 I 0.894
OGLUM06G05610 Oryza glumaepatula OGLUM06G05610 I 0.853
OGLUM03G11280 Oryza glumaepatula OGLUM03G11280 I 0.894
OGLUM02G37030 Oryza glumaepatula OGLUM02G37030 I 0.853
OBART08G15650 Oryza barthii OBART08G15650 I 0.870
OBART06G05420 Oryza barthii OBART06G05420 I 0.853
OBART03G11320 Oryza barthii OBART03G11320 I 0.894
LPERR08G12910 Leersia perrieri LPERR08G12910 I 0.870
MLOC_38567 Hordeum vulgare MLOC_38567 I 0.853
MLOC_66385 Hordeum vulgare MLOC_66385 I 0.894
OB03G21490 Oryza brachyantha OB03G21490 I 0.894
MTR_1g093750 Medicago truncatula MTR_1g093750 I 0.884
OGLUM08G16400 Oryza glumaepatula OGLUM08G16400 I 0.870
LPERR09G07210 Leersia perrieri LPERR09G07210 I 0.853
OMERI02G33790 Oryza meridionalis OMERI02G33790 I 0.853
ORGLA03G0109100 Oryza glaberrima ORGLA03G0109100 I 0.894
LPERR02G29460 Leersia perrieri LPERR02G29460 I 0.853
OB06G14990 Oryza brachyantha OB06G14990 I 0.853
LPERR03G10060 Leersia perrieri LPERR03G10060 I 0.894
MTR_4g131160 Medicago truncatula MTR_4g131160 I 0.853
LPERR09G06880 Leersia perrieri LPERR09G06880 I 0.870
OGLUM09G10750 Oryza glumaepatula OGLUM09G10750 I 0.853
Aquca_007_00571 Aquilegia coerulea Aquca_007_00571 N 0.858
Sb02g024460 Sorghum bicolor Sb02g024460 N 0.858
MLOC_12832 Hordeum vulgare MLOC_12832 N 0.858
PGSC0003DMG400023577 Solanum tuberosum PGSC0003DMG400023577 N 0.858
Pavir.Bb02155 Panicum virgatum Pavir.Bb02155 N 0.847
GSMUA_Achr5G29390_001 Musa acuminata GSMUA_Achr5G29390_001 N 0.846
GRMZM2G176141 Zea mays GRMZM2G176141 N 0.858
Si030496m.g Setaria italica Si030496m.g N 0.858
Gorai.009G230000 Gossypium raimondii Gorai.009G230000 N 0.847
BRADI3G36610 Brachypodium distachyon BRADI3G36610 N 0.842
Ca_18110 Cicer arietinum Ca_18110 N 0.842
GLYMA01G02930 Glycine max GLYMA01G02930 N 0.842
OLONG_011765 Oryza longistaminata OLONG_011765 N 0.848
evm.TU.supercontig_55.51 Carica papaya evm.TU.supercontig_55.51 N 0.842
Traes_5BL_CF90A7CAE Triticum aestivum Traes_5BL_CF90A7CAE N 0.858
Ca_14981 Cicer arietinum Ca_14981 N 0.846
TCM_000997 Theobroma cacao TCM_000997 N 0.842
Gorai.012G124100 Gossypium raimondii Gorai.012G124100 N 0.842
Pavir.Ba01821 Panicum virgatum Pavir.Ba01821 N 0.847
Solyc04g014360.2 Solanum lycopersicum Solyc04g014360.2 N 0.858
MTR_5g066080 Medicago truncatula MTR_5g066080 N 0.846
BRADI4G29990 Brachypodium distachyon BRADI4G29990 N 0.858