CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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PGSC0003DMG401007955
(
Solanum tuberosum
)
bHLH
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00010 (HLH)
IPR001092
PGSC0003DMG401007955
T043526_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
BIM2
M01701_2.00
Arabidopsis thaliana
NNCACGTGNN
NNCACGTGNN
PBM
Weirauch et al.(2014)
pTH8089
0.886
0.520
BIM2
M06727_2.00
Arabidopsis thaliana
CACGTGHBNNNNNNNNNNN
NNNNNNNNNNNVDCACGTG
Dap-seq
OMalley et al.(2016)
BIM2_colamp
0.886
0.520
BIM2
M06728_2.00
Arabidopsis thaliana
CACGTGMBNNNCVYV
BRBGNNNVKCACGTG
Dap-seq
OMalley et al.(2016)
BIM2_col_v3b
0.886
0.520
SPT
M01709_2.00
Arabidopsis thaliana
NCACGTGSN
NSCACGTGN
PBM
Weirauch et al.(2014)
pTH8111
0.867
0.920
BIM1
M01710_2.00
Arabidopsis thaliana
NCRCGTGNNN
NNNCACGYGN
PBM
Weirauch et al.(2014)
pTH8114
0.866
0.540
BIM1
M06739_2.00
Arabidopsis thaliana
CACGTGAYNHNNNH
DNNNDNRTCACGTG
Dap-seq
OMalley et al.(2016)
BIM1_col_a
0.866
0.540
BIM1
M06740_2.00
Arabidopsis thaliana
NVKCACGTGMYHHNHNHNHNNN
NNNDNDNDNDDRKCACGTGMBN
Dap-seq
OMalley et al.(2016)
BIM1_colamp_a
0.866
0.540
BIM1
M09787_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$BIM1_01
0.866
0.540
UNE10
M01705_2.00
Arabidopsis thaliana
HCACGTGM
KCACGTGD
PBM
Weirauch et al.(2014)
pTH8112
0.852
0.700
For this family, TFs with SR scores >
0.838
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
PGSC0003DMT400020532
bHLH
135
184
SAEVHNLSEKRRRSKINEKLKALQNLIPNSNKTDKASMLDEAIEYLKQLQ
PGSC0003DMT400020533
bHLH
135
184
SAEVHNLSEKRRRSKINEKLKALQNLIPNSNKTDKASMLDEAIEYLKQLQ
PGSC0003DMT400020534
bHLH
135
184
SAEVHNLSEKRRRSKINEKLKALQNLIPNSNKTDKASMLDEAIEYLKQLQ
Links
Other
bHLH
family TFs
Other
Solanum tuberosum
TFs
304 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy