POPTR_0012s07470 (Populus trichocarpa)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 POPTR_0012s07470 T043877_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
BPE
M01700_2.00
Arabidopsis thaliana
NCACGTNNN

NNNACGTGN
PBM
Weirauch et al.(2014)
pTH7290
0.879 0.941
BPE
M06726_2.00
Arabidopsis thaliana
NNNNNNNNCACGTGNNNNNWB

VWNNNNNCACGTGNNNNNNNN
Dap-seq
OMalley et al.(2016)
bHLH31_col
0.879 0.941
BHLH78
M01713_2.00
Arabidopsis thaliana
GCACGTGC

GCACGTGC
PBM
Weirauch et al.(2014)
pTH7666
0.866 0.882
BHLH49
M01052_2.00
Arabidopsis thaliana
NNCACGTGCN

NGCACGTGNN
PBM
Sullivan et al.(2014)
pTH7309
0.840 0.824
PK06517.1
M01122_2.00
Cannabis sativa
NCACGTGC

GCACGTGN
PBM
Lambert et al.(2019)
pTH10104
0.840 0.824
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0012s07470.1 bHLH 150 200

Links

Other bHLH family TFs
Other Populus trichocarpa TFs

560 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
MLOC_51405 Hordeum vulgare MLOC_51405 I 0.000
LPERR07G17940 Leersia perrieri LPERR07G17940 N 0.000
LjSGA_004510.1 Lotus japonicus LjSGA_004510.1 I 0.000
OBART07G20660 Oryza barthii OBART07G20660 N 0.000
ORGLA07G0158200 Oryza glaberrima ORGLA07G0158200 N 0.000
OGLUM07G20440 Oryza glumaepatula OGLUM07G20440 N 0.000
OMERI07G17320 Oryza meridionalis OMERI07G17320 N 0.000
OPUNC07G19500 Oryza punctata OPUNC07G19500 N 0.000
ORUFI07G21520 Oryza rufipogon ORUFI07G21520 N 0.000
OS07G0590100 Oryza sativa OS07G0590100 N 0.000
Pavir.Ib02022 Panicum virgatum Pavir.Ib02022 N 0.000
Pavir.J38099 Panicum virgatum Pavir.J38099 N 0.000
Pavir.J37325 Panicum virgatum Pavir.J37325 N 0.000
Pavir.Ib01978 Panicum virgatum Pavir.Ib01978 N 0.000
Pavir.J12087 Panicum virgatum Pavir.J12087 N 0.000
Si037429m.g Setaria italica Si037429m.g N 0.000
Sb02g038390 Sorghum bicolor Sb02g038390 N 0.000
Sb01g031900 Sorghum bicolor Sb01g031900 N 0.000
Sb01g031890 Sorghum bicolor Sb01g031890 N 0.000
Traes_2AS_1913BF8B3 Triticum aestivum Traes_2AS_1913BF8B3 N 0.000
GRMZM2G113860 Zea mays GRMZM2G113860 N 0.000
GRMZM2G105092 Zea mays GRMZM2G105092 N 0.000
GRMZM2G106026 Zea mays GRMZM2G106026 N 0.000
GRMZM2G069176 Zea mays GRMZM2G069176 N 0.000