Sb02g027460 (Sorghum bicolor)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 Sb02g027460 T044371_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
fgenesh1_pg.scaffold_37000071
M01757_2.00
Physcomitrella patens
NNCACGTGNN

NNCACGTGNN
PBM
Weirauch et al.(2014)
pTH8584
0.885 0.863
BIM1
M01710_2.00
Arabidopsis thaliana
NCRCGTGNNN

NNNCACGYGN
PBM
Weirauch et al.(2014)
pTH8114
0.855 0.863
BIM1
M06739_2.00
Arabidopsis thaliana
CACGTGAYNHNNNH

DNNNDNRTCACGTG
Dap-seq
OMalley et al.(2016)
BIM1_col_a
0.855 0.863
BIM1
M06740_2.00
Arabidopsis thaliana
NVKCACGTGMYHHNHNHNHNNN

NNNDNDNDNDDRKCACGTGMBN
Dap-seq
OMalley et al.(2016)
BIM1_colamp_a
0.855 0.863
BIM1
M09787_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$BIM1_01
0.855 0.863
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Sb02g027460.1 bHLH 237 287

Links

Other bHLH family TFs
Other Sorghum bicolor TFs

123 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
F775_23096 Aegilops tauschii F775_23096 I 0.914
AMTR_s00006p00250310 Amborella trichopoda AMTR_s00006p00250310 I 0.885
Aquca_002_00952 Aquilegia coerulea Aquca_002_00952 I 0.855
BIM1 Arabidopsis lyrata scaffold_600819.1 I 0.855
BIM1 Arabidopsis thaliana AT5G08130 D 0.855
Bostr.13129s0152 Boechera stricta Bostr.13129s0152 I 0.855
BRADI4G32967 Brachypodium distachyon BRADI4G32967 I 0.914
BRADI3G38970 Brachypodium distachyon BRADI3G38970 I 0.888
Bo5g020460 Brassica oleracea Bo5g020460 I 0.855
Bo9g174770 Brassica oleracea Bo9g174770 I 0.855
Bo2g161110 Brassica oleracea Bo2g161110 I 0.855
Bo3g004690 Brassica oleracea Bo3g004690 I 0.855
Bra029354 Brassica rapa Bra029354 I 0.855
Bra009322 Brassica rapa Bra009322 I 0.855
Bra005969 Brassica rapa Bra005969 I 0.855
PK10562.1 Cannabis sativa PK10562.1 I 0.855
PK01364.1 Cannabis sativa PK01364.1 I 0.865
Cagra.1365s0019 Capsella grandiflora Cagra.1365s0019 I 0.855
Carubv10000655m.g Capsella rubella Carubv10000655m.g I 0.855
evm.TU.supercontig_3.225 Carica papaya evm.TU.supercontig_3.225 I 0.885
evm.TU.supercontig_289.6 Carica papaya evm.TU.supercontig_289.6 I 0.852
Cla018818 Citrullus lanatus Cla018818 I 0.843
Cla022382 Citrullus lanatus Cla022382 I 0.865
Ciclev10020248m.g Citrus clementina Ciclev10020248m.g I 0.885
Ciclev10032020m.g Citrus clementina Ciclev10032020m.g I 0.865
orange1.1g038451m.g Citrus sinensis orange1.1g038451m.g I 0.885
orange1.1g019960m.g Citrus sinensis orange1.1g019960m.g I 0.865
Cucsa.328060 Cucumis sativus Cucsa.328060 I 0.865
Cucsa.113490 Cucumis sativus Cucsa.113490 I 0.855
Cucsa.198520 Cucumis sativus Cucsa.198520 I 0.874
Eucgr.B00645 Eucalyptus grandis Eucgr.B00645 I 0.855
Thhalv10013181m.g Eutrema salsugineum Thhalv10013181m.g I 0.855
gene04534-v1.0-hybrid Fragaria vesca gene04534-v1.0-hybrid I 0.865
gene26139-v1.0-hybrid Fragaria vesca gene26139-v1.0-hybrid I 0.841
GLYMA05G07490 Glycine max GLYMA05G07490 I 0.885
GLYMA02G13670 Glycine max GLYMA02G13670 I 0.865
GLYMA17G08980 Glycine max GLYMA17G08980 I 0.874
GLYMA01G09010 Glycine max GLYMA01G09010 I 0.854
Gorai.006G269200 Gossypium raimondii Gorai.006G269200 I 0.842
LPERR08G15680 Leersia perrieri LPERR08G15680 I 0.864
LPERR09G10080 Leersia perrieri LPERR09G10080 I 0.914
Lus10007974.g Linum usitatissimum Lus10007974.g I 0.850
Lus10013502.g Linum usitatissimum Lus10013502.g I 0.850
MDP0000261293 Malus domestica MDP0000261293 I 0.865
cassava29314.valid.m1 Manihot esculenta cassava29314.valid.m1 I 0.865
cassava29318.valid.m1 Manihot esculenta cassava29318.valid.m1 I 0.885
cassava43379.valid.m1 Manihot esculenta cassava43379.valid.m1 I 0.885
cassava43370.valid.m1 Manihot esculenta cassava43370.valid.m1 I 0.865
MTR_4g110040 Medicago truncatula MTR_4g110040 I 0.885
mgf005849m Mimulus guttatus mgf005849m I 0.855
mgf013208m Mimulus guttatus mgf013208m I 0.865
mgf001137m Mimulus guttatus mgf001137m I 0.855
GSMUA_Achr9G28050_001 Musa acuminata GSMUA_Achr9G28050_001 I 0.873
GSMUA_Achr9G19110_001 Musa acuminata GSMUA_Achr9G19110_001 I 0.861
GSMUA_Achr4G19530_001 Musa acuminata GSMUA_Achr4G19530_001 I 0.861
GSMUA_Achr3G10640_001 Musa acuminata GSMUA_Achr3G10640_001 I 0.849
GSMUA_Achr2G05450_001 Musa acuminata GSMUA_Achr2G05450_001 I 0.861
OBART09G13850 Oryza barthii OBART09G13850 I 0.914
OB02G38020 Oryza brachyantha OB02G38020 I 0.852
OB08G25940 Oryza brachyantha OB08G25940 I 0.888
ORGLA02G0264700 Oryza glaberrima ORGLA02G0264700 I 0.852
ORGLA09G0105800 Oryza glaberrima ORGLA09G0105800 I 0.914
ORGLA08G0164200 Oryza glaberrima ORGLA08G0164200 I 0.888
ORGLA06G0286200 Oryza glaberrima ORGLA06G0286200 I 0.914
OGLUM08G19830 Oryza glumaepatula OGLUM08G19830 I 0.888
OGLUM09G14430 Oryza glumaepatula OGLUM09G14430 I 0.914
BGIOSGA030958 Oryza indica BGIOSGA030958 I 0.914
BGIOSGA028888 Oryza indica BGIOSGA028888 I 0.888
BGIOSGA005697 Oryza indica BGIOSGA005697 I 0.852
OLONG_020060 Oryza longistaminata OLONG_020060 I 0.914
OLONG_003583 Oryza longistaminata OLONG_003583 I 0.888
OMERI09G10560 Oryza meridionalis OMERI09G10560 I 0.914
ONIVA08G20800 Oryza nivara ONIVA08G20800 I 0.888
ONIVA09G14370 Oryza nivara ONIVA09G14370 I 0.914
OPUNC09G12310 Oryza punctata OPUNC09G12310 I 0.914
OPUNC08G16820 Oryza punctata OPUNC08G16820 I 0.888
ORUFI09G14830 Oryza rufipogon ORUFI09G14830 I 0.914
ORUFI08G21030 Oryza rufipogon ORUFI08G21030 I 0.888
OS02G0726700 Oryza sativa OS02G0726700 I 0.852
OS08G0490000 Oryza sativa OS08G0490000 I 0.888
OS09G0475400 Oryza sativa OS09G0475400 I 0.914
Pavir.Ab03017 Panicum virgatum Pavir.Ab03017 I 0.852
Pavir.J38910 Panicum virgatum Pavir.J38910 I 0.858
Pavir.Fb01833 Panicum virgatum Pavir.Fb01833 I 0.858
Pavir.J04606 Panicum virgatum Pavir.J04606 I 0.914
Pavir.Aa00700 Panicum virgatum Pavir.Aa00700 I 0.852
gw1.90.123.1 Physcomitrella patens gw1.90.123.1 I 0.885
fgenesh1_pg.scaffold_37000071 Physcomitrella patens fgenesh1_pg.scaffold_37000071 D 0.885
estExt_fgenesh1_pg.C_2110039 Physcomitrella patens estExt_fgenesh1_pg.C_2110039 I 0.885
POPTR_0008s11120 Populus trichocarpa POPTR_0008s11120 I 0.865
POPTR_0015s03550 Populus trichocarpa POPTR_0015s03550 I 0.885
POPTR_0012s06650 Populus trichocarpa POPTR_0012s06650 I 0.842
POPTR_0010s14740 Populus trichocarpa POPTR_0010s14740 I 0.865
PRUPE_ppa008387mg Prunus persica PRUPE_ppa008387mg I 0.865
PRUPE_ppa003436mg Prunus persica PRUPE_ppa003436mg I 0.885
30138.m003913 Ricinus communis 30138.m003913 I 0.861
30138.m003899 Ricinus communis 30138.m003899 I 0.865
SapurV1A.0060s0510 Salix purpurea SapurV1A.0060s0510 I 0.865
SapurV1A.0084s0570 Salix purpurea SapurV1A.0084s0570 I 0.865
SapurV1A.0178s0150 Salix purpurea SapurV1A.0178s0150 I 0.885
SapurV1A.0868s0010 Salix purpurea SapurV1A.0868s0010 I 0.885
SELMODRAFT_451475 Selaginella moellendorffii SELMODRAFT_451475 I 0.888
SELMODRAFT_451477 Selaginella moellendorffii SELMODRAFT_451477 I 0.888
Si013622m.g Setaria italica Si013622m.g I 0.858
Si029604m.g Setaria italica Si029604m.g I 0.914
Si016505m.g Setaria italica Si016505m.g I 0.852
Solyc04g005280.2 Solanum lycopersicum Solyc04g005280.2 I 0.865
Solyc05g011810.2 Solanum lycopersicum Solyc05g011810.2 I 0.865
Solyc06g069370.2 Solanum lycopersicum Solyc06g069370.2 I 0.885
Solyc03g114720.2 Solanum lycopersicum Solyc03g114720.2 I 0.855
PGSC0003DMG400001919 Solanum tuberosum PGSC0003DMG400001919 I 0.865
PGSC0003DMG400019654 Solanum tuberosum PGSC0003DMG400019654 I 0.865
Sb04g029270 Sorghum bicolor Sb04g029270 I 0.852
Sb07g028860 Sorghum bicolor Sb07g028860 I 0.858
TCM_014392 Theobroma cacao TCM_014392 I 0.885
Traes_5DL_E96693018 Triticum aestivum Traes_5DL_E96693018 I 0.914
Traes_5BL_AAC9C7238 Triticum aestivum Traes_5BL_AAC9C7238 I 0.914
Traes_5AL_0D4BDDDCD Triticum aestivum Traes_5AL_0D4BDDDCD I 0.914
BIM2 Vitis vinifera VIT_01s0010g00540 I 0.865
BIM1 Vitis vinifera VIT_17s0000g04790 I 0.885
GRMZM2G009478 Zea mays GRMZM2G009478 I 0.914
GRMZM2G317450 Zea mays GRMZM2G317450 I 0.852
GRMZM2G089501 Zea mays GRMZM2G089501 I 0.914