CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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PHO4
(
Saccharomyces cerevisiae
)
bHLH
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00010 (HLH)
IPR001092
YFR034C
T046366_2.00
Ensembl (2018-Dec-8)
Link out
NCBI Gene Info:
Enables DNA-binding transcription factor activity and sequence-specific DNA binding activity. Involved in several processes, including cellular response to phosphate starvation; chromatin remodeling; and regulation of transcription by RNA polymerase II. Located in cytoplasm and nucleus. [provided by Alliance of Genome Resources, Apr 2022]
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
PHO4
M00009_2.00
Saccharomyces cerevisiae
NSCACGTGBN
NVCACGTGSN
PBM
Badis et al.(2008)
PHO4_4536
(Direct)
(Direct)
PHO4
M01519_2.00
Saccharomyces cerevisiae
MDCGTGBNN
NNVCACGHK
PBM
Zhu et al.(2009)
Pho4
(Direct)
(Direct)
PHO4
M08484_2.00
Saccharomyces cerevisiae
VCACGTGB
VCACGTGB
Misc
DeBoer et al.(2011)
YFR034C_1390
(Direct)
(Direct)
PHO4
M09482_2.00
Saccharomyces cerevisiae
DRSCACGTGBNN
NNVCACGTGSYH
Misc
Heinz et al.(2010)
Yeast-Pho4_GSE29506
(Direct)
(Direct)
PHO4
M09896_2.00
Saccharomyces cerevisiae
BVVCACGTKBKN
NMVMACGTGBBV
Transfac
Matys et al.(2006)
F$PHO4_01
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
For this family, TFs with SR scores >
0.838
will likely have a similar motif
Experimental Constructs
Motif ID
Domain
From
To
Sequence
M00009_2.00
bHLH
51
107
KRESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQ
M01519_2.00
bHLH
251
307
KRESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQ
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
YFR034C
bHLH
251
307
KRESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQ
Links
Other
bHLH
family TFs
Other
Saccharomyces cerevisiae
TFs
4 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy