Alligator_sinensis_CCG021907.1 (Alligator sinensis)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 Alligator_sinensis_CCG021907.1 T046690_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Bhlhe40
M00119_2.00
Mus musculus
DCACGTGMN

NKCACGTGH
PBM
Badis et al.(2009)
Bhlhb2_1274
0.914 1.000
Bhlhe40
M01738_2.00
Mus musculus
NCACRNBN

NVNYGTGN
PBM
Weirauch et al.(2014)
pTH4330
0.914 1.000
BHLHE40
M02788_2.00
Homo sapiens
NKCACGTGMH

DKCACGTGMN
SELEX
Jolma et al.(2013)
BHLHB2_1
0.914 1.000
Bhlhe40
M02817_2.00
Mus musculus
NKCACGTGMN

NKCACGTGMN
SELEX
Jolma et al.(2013)
Bhlhb2_1
0.914 1.000
Bhlhe40
M02818_2.00
Mus musculus
NKCACGTGMN

NKCACGTGMN
SELEX
Jolma et al.(2013)
Bhlhb2_2
0.914 1.000
BHLHE40
M04126_2.00
Homo sapiens
VTCACGTGAB

VTCACGTGAB
SELEX
Yin et al.(2017)
BHLHE40_eDBD_HT-SELEX
0.914 1.000
BHLHE40
M07798_2.00
Homo sapiens
DCACGTGMSN

NSKCACGTGH
ChIP-seq
Gerstein et al.(2012)
HepG2_BHLHE40_HudsonAlpha
0.914 1.000
BHLHE40
M08726_2.00
Homo sapiens
DDCACGTGMS

SKCACGTGHH
Misc
Kulakovskiy et al.(2013)
BHE40_HUMAN.H11MO.0.A
0.914 1.000
Bhlhe40
M08761_2.00
Mus musculus
DCACGTGMS

SKCACGTGH
Misc
Kulakovskiy et al.(2013)
BHE40_MOUSE.H11MO.0.A
0.914 1.000
BHLHE40
M09456_2.00
Homo sapiens
DCACGTGMNN

NNKCACGTGH
Misc
Heinz et al.(2010)
HepG2-BHLHE40_GSE31477
0.914 1.000
BHLHE40
M09842_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$BHLHE40_03
0.914 1.000
BHLHE40
M09843_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$DEC1_Q2
0.914 1.000
BHLHE40
M09844_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$DEC1_Q3
0.914 1.000
BHLHE40
M09845_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$STRA13_01
0.914 1.000
BHLHE40
M04127_2.00
Homo sapiens
RTCACGTGAY

RTCACGTGAY
SELEX
Yin et al.(2017)
BHLHE40_eDBD_Methyl-HT-SELEX
0.914 1.000
Bhlhe41
M01739_2.00
Mus musculus
NMNCGTGMN

NKCACGNKN
PBM
Weirauch et al.(2014)
pTH5060
0.914 0.981
BHLHE41
M02782_2.00
Homo sapiens
NKCACGTGMN

NKCACGTGMN
SELEX
Jolma et al.(2013)
BHLHB3_1
0.914 0.981
BHLHE41
M02783_2.00
Homo sapiens
RKCACGTGAY

RTCACGTGMY
SELEX
Jolma et al.(2013)
BHLHE41_1
0.914 0.981
BHLHE41
M04106_2.00
Homo sapiens
VTCACGTGAB

VTCACGTGAB
SELEX
Yin et al.(2017)
BHLHE41_eDBD_HT-SELEX
0.914 0.981
BHLHE41
M09833_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$DEC2_Q2
0.914 0.981
BHLHE41
M09834_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$DEC2_Q3
0.914 0.981
BHLHE41
M04107_2.00
Homo sapiens
RTCACGTGAY

RTCACGTGAY
SELEX
Yin et al.(2017)
BHLHE41_eDBD_Methyl-HT-SELEX
0.914 0.981
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Alligator_sinensis_CCG021907.1 bHLH 22 76

Links

Other bHLH family TFs
Other Alligator sinensis TFs

117 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
A_00348 Schistosoma haematobium A_00348 N 0.000
PXEA_0001659601 Protopolystoma xenopodis PXEA_0001659601 N 0.000
SCUD_0000559501 Schistosoma curassoni SCUD_0000559501 N 0.000
Sjc_0011400 Schistosoma japonicum Sjc_0011400 N 0.000
SMTD_0000266501 Schistosoma mattheei SMTD_0000266501 N 0.000
SROB_0002139201 Schistosoma rodhaini SROB_0002139201 N 0.000
TRE_0001129601 Trichobilharzia regenti TRE_0001129601 N 0.000