CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Gfo_R015246
(
Geospiza fortis
)
bHLH
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00010 (HLH)
IPR001092
Gfo_R015246
T047361_2.00
GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
MYCN
M04128_2.00
Homo sapiens
NVCACGTGNN
NNCACGTGBN
SELEX
Yin et al.(2017)
MYCN_eDBD_HT-SELEX
0.886
0.981
MYCN
M08053_2.00
Homo sapiens
NNCCACGTGGNN
NNCCACGTGGNN
ChIP-seq
Mathelier et al.(2014)
MA0104.4
0.886
0.981
MYCN
M08727_2.00
Homo sapiens
BHSCACGTGBYB
VRVCACGTGSDV
Misc
Kulakovskiy et al.(2013)
MYCN_HUMAN.H11MO.0.A
0.886
0.981
MYCN
M09846_2.00
Homo sapiens
NNVCACGTGNHN
NDNCACGTGBNN
Transfac
Matys et al.(2006)
V$NMYC_01
0.886
0.981
MYCN
M09847_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$NMYC_02
0.886
0.981
MYCN
M09848_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$NMYC_Q3
0.886
0.981
Mycn
M08768_2.00
Mus musculus
MCACGYGV
BCRCGTGK
Misc
Kulakovskiy et al.(2013)
MYCN_MOUSE.H11MO.0.A
0.886
0.962
Mycn
M09476_2.00
Mus musculus
SCACGTGSNN
NNSCACGTGS
Misc
Heinz et al.(2010)
mES-nMyc_GSE11431
0.886
0.962
For this family, TFs with SR scores >
0.838
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Gfo_R015246
bHLH
300
352
RRRNHNILERQRRNDLRSSFLTLRDHVPELVQNEKAAKVVILKKATEYVHSLQ
Links
Other
bHLH
family TFs
Other
Geospiza fortis
TFs
51 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy