CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Cucsa.113490
(
Cucumis sativus
)
bHLH
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00010 (HLH)
IPR001092
Cucsa.113490
T048160_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
BIM1
M01710_2.00
Arabidopsis thaliana
NCRCGTGNNN
NNNCACGYGN
PBM
Weirauch et al.(2014)
pTH8114
0.884
0.941
BIM1
M06739_2.00
Arabidopsis thaliana
CACGTGAYNHNNNH
DNNNDNRTCACGTG
Dap-seq
OMalley et al.(2016)
BIM1_col_a
0.884
0.941
BIM1
M06740_2.00
Arabidopsis thaliana
NVKCACGTGMYHHNHNHNHNNN
NNNDNDNDNDDRKCACGTGMBN
Dap-seq
OMalley et al.(2016)
BIM1_colamp_a
0.884
0.941
BIM1
M09787_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$BIM1_01
0.884
0.941
fgenesh1_pg.scaffold_37000071
M01757_2.00
Physcomitrella patens
NNCACGTGNN
NNCACGTGNN
PBM
Weirauch et al.(2014)
pTH8584
0.882
0.902
BIM2
M01701_2.00
Arabidopsis thaliana
NNCACGTGNN
NNCACGTGNN
PBM
Weirauch et al.(2014)
pTH8089
0.864
0.804
BIM2
M06727_2.00
Arabidopsis thaliana
CACGTGHBNNNNNNNNNNN
NNNNNNNNNNNVDCACGTG
Dap-seq
OMalley et al.(2016)
BIM2_colamp
0.864
0.804
BIM2
M06728_2.00
Arabidopsis thaliana
CACGTGMBNNNCVYV
BRBGNNNVKCACGTG
Dap-seq
OMalley et al.(2016)
BIM2_col_v3b
0.864
0.804
For this family, TFs with SR scores >
0.838
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Cucsa.113490.1
bHLH
269
319
PRSKHSATEQRRRSKINDRFQKLRELIPRSDQKRDKASFLLEVIEYIQFLQ
Cucsa.113490.2
bHLH
268
318
PRSKHSATEQRRRSKINDRFQKLRELIPRSDQKRDKASFLLEVIEYIQFLQ
Cucsa.113490.3
bHLH
231
281
PRSKHSATEQRRRSKINDRFQKLRELIPRSDQKRDKASFLLEVIEYIQFLQ
Cucsa.113490.4
bHLH
144
194
PRSKHSATEQRRRSKINDRFQKLRELIPRSDQKRDKASFLLEVIEYIQFLQ
Links
Other
bHLH
family TFs
Other
Cucumis sativus
TFs
169 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy