CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Cucsa.255290
(
Cucumis sativus
)
bHLH
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00010 (HLH)
IPR001092
Cucsa.255290
T048208_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
BHLH104
M01706_2.00
Arabidopsis thaliana
GGCACGTGCC
GGCACGTGCC
PBM
Weirauch et al.(2014)
pTH7365
0.857
0.745
BHLH104
M06737_2.00
Arabidopsis thaliana
GVCACGTGBMDDBHNSDNBH
DVNHSNDVHHKVCACGTGBC
Dap-seq
OMalley et al.(2016)
bHLH104_col_b
0.857
0.745
For this family, TFs with SR scores >
0.838
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Cucsa.255290.1
bHLH
73
123
ASSKACRERLRREKLNDRFLDLSIALEPSRHTKTNKPAILDDAIRVLNQLK
Links
Other
bHLH
family TFs
Other
Cucumis sativus
TFs
26 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy