CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Gorai.013G138300
(
Gossypium raimondii
)
bHLH
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00010 (HLH)
IPR001092
Gorai.013G138300
T050122_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
BHLH80
M06722_2.00
Arabidopsis thaliana
DNCMACTTGCH
DGCAAGTKGNH
Dap-seq
OMalley et al.(2016)
bHLH80_col_a
0.914
0.961
BHLH80
M06723_2.00
Arabidopsis thaliana
DKCMACTTGCA
TGCAAGTKGMH
Dap-seq
OMalley et al.(2016)
bHLH80_colamp_a
0.914
0.961
OS08G0506700
M01755_2.00
Oryza sativa
NCCACTTGN
NCAAGTGGN
PBM
Weirauch et al.(2014)
pTH8547
0.873
0.882
For this family, TFs with SR scores >
0.838
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Gorai.013G138300.1
bHLH
190
240
ATHPRSIAERVRRTRISDRIRKLQELVPNMDKQTNTADMLEEAVEYVKYLQ
Gorai.013G138300.2
bHLH
190
225
ATHPRSIAERVRRTRISDRIRKLQELVPNMDKQIKR
Gorai.013G138300.3
bHLH
190
224
ATHPRSIAERVRRTRISDRIRKLQELVPNMDKIKR
Links
Other
bHLH
family TFs
Other
Gossypium raimondii
TFs
178 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy