Pavir.Ga01979 (Panicum virgatum)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 Pavir.Ga01979 T050791_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ga01979.1.p bHLH 142 195

Links

Other bHLH family TFs
Other Panicum virgatum TFs

74 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
PDK_20s1479721g001 Phoenix dactylifera PDK_20s1479721g001 N 0.887
Cagra.12562s0002 Capsella grandiflora Cagra.12562s0002 N 0.867
Bostr.27991s0112 Boechera stricta Bostr.27991s0112 N 0.867
Aquca_019_00196 Aquilegia coerulea Aquca_019_00196 N 0.887
mgf025442m Mimulus guttatus mgf025442m N 0.855
mgf022253m Mimulus guttatus mgf022253m N 0.855
Cucsa.385700 Cucumis sativus Cucsa.385700 N 0.887
cassava28523.m1 Manihot esculenta cassava28523.m1 N 0.887
Pm001154 Prunus mume Pm001154 N 0.890
Cla008847 Citrullus lanatus Cla008847 N 0.887
Ca_17453 Cicer arietinum Ca_17453 N 0.887
FIT1 Vitis vinifera VIT_06s0061g00720 N 0.911
Traes_2DL_47E8C44C6 Triticum aestivum Traes_2DL_47E8C44C6 N 0.887
Traes_2BL_F442E87DD Triticum aestivum Traes_2BL_F442E87DD N 0.887
Traes_2AL_088338613 Triticum aestivum Traes_2AL_088338613 N 0.887
TCM_041590 Theobroma cacao TCM_041590 N 0.887
Solyc06g051550.2 Solanum lycopersicum Solyc06g051550.2 N 0.876
Carubv10023654m.g Capsella rubella Carubv10023654m.g N 0.867
Ciclev10003738m.g Citrus clementina Ciclev10003738m.g N 0.838
Ciclev10029810m.g Citrus clementina Ciclev10029810m.g N 0.852
chr3.CM0396.580.nc Lotus japonicus chr3.CM0396.580.nc N 0.887
chr3.CM0070.320.nc Lotus japonicus chr3.CM0070.320.nc N 0.887
PK26582.1 Cannabis sativa PK26582.1 N 0.887
Thhalv10016957m.g Eutrema salsugineum Thhalv10016957m.g N 0.867
SapurV1A.1382s0060 Salix purpurea SapurV1A.1382s0060 N 0.887
Pavir.J29678 Panicum virgatum Pavir.J29678 N 0.887
Pavir.J28741 Panicum virgatum Pavir.J28741 N 0.911
orange1.1g042465m.g Citrus sinensis orange1.1g042465m.g N 0.852
orange1.1g021355m.g Citrus sinensis orange1.1g021355m.g N 0.852
Lus10016151.g Linum usitatissimum Lus10016151.g N 0.852
Gorai.009G090400 Gossypium raimondii Gorai.009G090400 N 0.887
gene24608-v1.0-hybrid Fragaria vesca gene24608-v1.0-hybrid N 0.887
gene24607-v1.0-hybrid Fragaria vesca gene24607-v1.0-hybrid N 0.867
evm.TU.contig_28125.2 Carica papaya evm.TU.contig_28125.2 N 0.887
Eucgr.B03931 Eucalyptus grandis Eucgr.B03931 N 0.887
Ciclev10030052m.g Citrus clementina Ciclev10030052m.g N 0.852
Si010533m.g Setaria italica Si010533m.g N 0.911
Si010468m.g Setaria italica Si010468m.g N 0.911
GRMZM2G173521 Zea mays GRMZM2G173521 N 0.911
GRMZM2G107672 Zea mays GRMZM2G107672 N 0.911
GLYMA13G39650 Glycine max GLYMA13G39650 N 0.887
GLYMA12G30240 Glycine max GLYMA12G30240 N 0.876
GLYMA12G08640 Glycine max GLYMA12G08640 N 0.867
GLYMA11G19850 Glycine max GLYMA11G19850 N 0.887
FIT1 Arabidopsis lyrata fgenesh2_kg.4__753__AT2G28160.1 N 0.867
BRADI5G07720 Brachypodium distachyon BRADI5G07720 N 0.887
Bra034392 Brassica rapa Bra034392 N 0.867
Bra011972 Brassica rapa Bra011972 N 0.867
Bra000495 Brassica rapa Bra000495 N 0.867
Bo4g165090 Brassica oleracea Bo4g165090 N 0.867
Bo4g071850 Brassica oleracea Bo4g071850 N 0.867
Bo3g040310 Brassica oleracea Bo3g040310 N 0.867
FIT Arabidopsis thaliana AT2G28160 N 0.867
AMTR_s00102p00056000 Amborella trichopoda AMTR_s00102p00056000 N 0.854
GSMUA_Achr6G27600_001 Musa acuminata GSMUA_Achr6G27600_001 N 0.911
LPERR04G07210 Leersia perrieri LPERR04G07210 N 0.911
MLOC_6707 Hordeum vulgare MLOC_6707 N 0.887
Sb06g012030 Sorghum bicolor Sb06g012030 N 0.911
PRUPE_ppa018718mg Prunus persica PRUPE_ppa018718mg N 0.890
FIT1 Populus trichocarpa POPTR_0009s01100 N 0.887
PGSC0003DMG400019017 Solanum tuberosum PGSC0003DMG400019017 N 0.876
OS04G0381700 Oryza sativa OS04G0381700 N 0.911
ORUFI04G11150 Oryza rufipogon ORUFI04G11150 N 0.911
ORGLA04G0072000 Oryza glaberrima ORGLA04G0072000 N 0.911
ORGLA02G0343900 Oryza glaberrima ORGLA02G0343900 N 0.911
OPUNC04G08160 Oryza punctata OPUNC04G08160 N 0.911
ONIVA04G07960 Oryza nivara ONIVA04G07960 N 0.911
OLONG_016577 Oryza longistaminata OLONG_016577 N 0.911
OGLUM04G09730 Oryza glumaepatula OGLUM04G09730 N 0.911
OBART04G10120 Oryza barthii OBART04G10120 N 0.911
OB04G17410 Oryza brachyantha OB04G17410 N 0.911
MTR_4g057270 Medicago truncatula MTR_4g057270 N 0.867
MTR_2g084280 Medicago truncatula MTR_2g084280 N 0.867
AMTR_s00102p00046460 Amborella trichopoda AMTR_s00102p00046460 N 0.854