Pavir.Ia02188 (Panicum virgatum)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 Pavir.Ia02188 T050821_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PIF3
M00854_2.00
Arabidopsis thaliana
CACGTGSNN

NNSCACGTG
PBM
Franco-Zorrilla et al.(2014)
PIF3
0.879 0.694
PIF3
M00722_2.00
Arabidopsis thaliana
NCACRTN

NAYGTGN
PBM
Chang et al.(2013)
pTH8200
0.879 0.694
PK05451.1
M01120_2.00
Cannabis sativa
YCACGTGM

KCACGTGR
PBM
Lambert et al.(2019)
pTH10100
0.879 0.694
PIF3
M08045_2.00
Arabidopsis thaliana
HCACGTGGVH

DBCCACGTGD
ChIP-seq
Mathelier et al.(2014)
MA0560.1
0.879 0.694
PIF3
M09780_2.00
Arabidopsis thaliana
BDRRRVCACGTGRVSHCD

HGDSBYCACGTGBYYYHV
Transfac
Matys et al.(2006)
P$PIF3_01
0.879 0.694
PIF3
M09781_2.00
Arabidopsis thaliana
DDDVCCACGTGGVMVNB

VNBKBCCACGTGGBHHH
Transfac
Matys et al.(2006)
P$PIF3_02
0.879 0.694
UNE10
M01705_2.00
Arabidopsis thaliana
HCACGTGM

KCACGTGD
PBM
Weirauch et al.(2014)
pTH8112
0.876 0.918
SPT
M01709_2.00
Arabidopsis thaliana
NCACGTGSN

NSCACGTGN
PBM
Weirauch et al.(2014)
pTH8111
0.868 0.735
e_gw1.209.40.1
M01756_2.00
Physcomitrella patens
NNCACGTGNN

NNCACGTGNN
PBM
Weirauch et al.(2014)
pTH8070
0.867 0.653
LRL2
M06738_2.00
Arabidopsis thaliana
CACGTGSVDMNCACG

CGTGNKHBSCACGTG
Dap-seq
OMalley et al.(2016)
bHLH69_col_a
0.867 0.633
PIF4
M08046_2.00
Arabidopsis thaliana
CACGTGSV

BSCACGTG
ChIP-seq
Mathelier et al.(2014)
MA0561.1
0.858 0.714
PIF5
M08047_2.00
Arabidopsis thaliana
YCACRTGS

SCAYGTGR
ChIP-seq
Mathelier et al.(2014)
MA0562.1
0.846 0.694
PIF5
M09452_2.00
Arabidopsis thaliana
NNBCAYGTGV

BCACRTGVNN
Misc
Heinz et al.(2010)
Arabidopsis-PIF5ox_GSE35062
0.846 0.694
PIF1
M01703_2.00
Arabidopsis thaliana
NNCACGTGNN

NNCACGTGNN
PBM
Weirauch et al.(2014)
pTH8733
0.845 0.673
PIF1
M08404_2.00
Arabidopsis thaliana
NCACGTGWSNYNHH

DDNRNSWCACGTGN
ChIP-chip
Mathelier et al.(2014)
MA0552.1
0.845 0.673
PIF1
M09783_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$PIF1_01
0.845 0.673
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ia02188.1.p bHLH 294 342
Pavir.Ia02188.2.p bHLH 294 342

Links

Other bHLH family TFs
Other Panicum virgatum TFs

550 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ACRE_023020 Acremonium chrysogenum ACRE_023020 I 0.000
Bcin13g04290 Botrytis cinerea Bcin13g04290 I 0.000
CGGC5_5349 Colletotrichum gloeosporioides CGGC5_5349 I 0.000
CHGG_10292 Chaetomium globosum CHGG_10292 I 0.000
estExt_fgenesh3_kg.C_100506 Neurospora discreta estExt_fgenesh3_kg.C_100506 I 0.000
F503_00525 Ophiostoma piceae uamh F503_00525 I 0.000
FFUJ_09752 Fusarium fujikuroi FFUJ_09752 I 0.000
FGRRES_04293 Fusarium graminearum FGRRES_04293 I 0.000
FOXG_13949 Fusarium oxysporum FOXG_13949 I 0.000
FPSE_04814 Fusarium pseudograminearum FPSE_04814 I 0.000
FVEG_11371 Fusarium verticillioides FVEG_11371 I 0.000
GGTG_10358 Gaeumannomyces graminis GGTG_10358 I 0.000
MAPG_02519 Magnaporthe poae MAPG_02519 I 0.000
MBM_09584 Marssonina brunnea MBM_09584 I 0.000
MGG_03133 Magnaporthe oryzae MGG_03133 I 0.000
MYCTH_2312442 Myceliophthora thermophila MYCTH_2312442 I 0.000
NCU01629 Neurospora crassa NCU01629 D 0.000
NechaG101360 Fusarium solani NechaG101360 I 0.000
NEUTE1DRAFT_130390 Neurospora tetrasperma NEUTE1DRAFT_130390 I 0.000
OCS_00830 Ophiocordyceps sinensis OCS_00830 I 0.000
PODANS_6_5390 Podospora anserina PODANS_6_5390 I 0.000
S40285_07199 Stachybotrys chlorohalonata S40285_07199 I 0.000
S40288_06328 Stachybotrys chartarum S40288_06328 I 0.000
SBOR_4904 Sclerotinia borealis SBOR_4904 I 0.000
SMAC_02359 Sordaria macrospora SMAC_02359 I 0.000
SS1G_09588 Sclerotinia sclerotiorum SS1G_09588 I 0.000
THITE_2124193 Thielavia terrestris THITE_2124193 I 0.000
VDAG_10032 Verticillium dahliae VDAG_10032 I 0.000
VDBG_03423 Verticillium alfalfae VDBG_03423 I 0.000
VDBG_03423 Verticillium albo atrum VDBG_03423 I 0.000