Pavir.J03221 (Panicum virgatum)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 Pavir.J03221 T050858_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
e_gw1.209.40.1
M01756_2.00
Physcomitrella patens
NNCACGTGNN

NNCACGTGNN
PBM
Weirauch et al.(2014)
pTH8070
0.852 0.875
LRL2
M06738_2.00
Arabidopsis thaliana
CACGTGSVDMNCACG

CGTGNKHBSCACGTG
Dap-seq
OMalley et al.(2016)
bHLH69_col_a
0.852 0.833
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J03221.1.p bHLH 130 177

Links

Other bHLH family TFs
Other Panicum virgatum TFs

229 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
PK27100.1 Cannabis sativa PK27100.1 N 0.000
Ciclev10007308m.g Citrus clementina Ciclev10007308m.g N 0.000
mgf025287m Mimulus guttatus mgf025287m N 0.000
TRIUR3_10927 Triticum urartu TRIUR3_10927 N 0.000
Traes_6DS_FC6D9CA6B Triticum aestivum Traes_6DS_FC6D9CA6B N 0.000
Traes_6AS_2B943BE9C Triticum aestivum Traes_6AS_2B943BE9C N 0.000
Traes_4DS_9C5CECE46 Triticum aestivum Traes_4DS_9C5CECE46 N 0.000
Traes_4DS_990D31BB1 Triticum aestivum Traes_4DS_990D31BB1 N 0.000
Traes_4BS_D5227ED8B Triticum aestivum Traes_4BS_D5227ED8B N 0.000
Traes_4BS_5B1737D7C Triticum aestivum Traes_4BS_5B1737D7C N 0.000
Traes_4AL_A494372EB Triticum aestivum Traes_4AL_A494372EB N 0.000
Traes_4AL_54F25AA7C Triticum aestivum Traes_4AL_54F25AA7C N 0.000
Solyc12g009640.1 Solanum lycopersicum Solyc12g009640.1 N 0.000
Solyc10g080090.1 Solanum lycopersicum Solyc10g080090.1 N 0.000
Eucgr.C01383 Eucalyptus grandis Eucgr.C01383 N 0.000
gene15718-v1.0-hybrid Fragaria vesca gene15718-v1.0-hybrid N 0.000
SapurV1A.0034s0250 Salix purpurea SapurV1A.0034s0250 N 0.000
Pavir.J31170 Panicum virgatum Pavir.J31170 N 0.000
Pavir.J05554 Panicum virgatum Pavir.J05554 N 0.000
Pavir.Ib03527 Panicum virgatum Pavir.Ib03527 N 0.000
Pavir.Ia00683 Panicum virgatum Pavir.Ia00683 N 0.000
Pavir.Eb00997 Panicum virgatum Pavir.Eb00997 N 0.000
Pavir.Eb00995 Panicum virgatum Pavir.Eb00995 N 0.000
Pavir.Ea02468 Panicum virgatum Pavir.Ea02468 N 0.000
orange1.1g002915m.g Citrus sinensis orange1.1g002915m.g N 0.000
MDP0000394762 Malus domestica MDP0000394762 N 0.000
Gorai.004G107300 Gossypium raimondii Gorai.004G107300 N 0.000
gene31107-v1.0-hybrid Fragaria vesca gene31107-v1.0-hybrid N 0.000
gene30791-v1.0-hybrid Fragaria vesca gene30791-v1.0-hybrid N 0.000
Si034159m.g Setaria italica Si034159m.g N 0.000
Si000431m.g Setaria italica Si000431m.g N 0.000
Sb02g043380 Sorghum bicolor Sb02g043380 N 0.000
MLOC_42818 Hordeum vulgare MLOC_42818 N 0.000
GSMUA_Achr8G29120_001 Musa acuminata GSMUA_Achr8G29120_001 N 0.000
GSMUA_Achr3G16690_001 Musa acuminata GSMUA_Achr3G16690_001 N 0.000
GSMUA_Achr3G02770_001 Musa acuminata GSMUA_Achr3G02770_001 N 0.000
GLYMA17G11981 Glycine max GLYMA17G11981 N 0.000
GLYMA13G22881 Glycine max GLYMA13G22881 N 0.000
GLYMA13G22855 Glycine max GLYMA13G22855 N 0.000
BRADI3G40810 Brachypodium distachyon BRADI3G40810 N 0.000
BRADI3G16050 Brachypodium distachyon BRADI3G16050 N 0.000
BRADI1G09660 Brachypodium distachyon BRADI1G09660 N 0.000
BRADI1G09650 Brachypodium distachyon BRADI1G09650 N 0.000
BGIOSGA020445 Oryza indica BGIOSGA020445 N 0.000
BGIOSGA018468 Oryza indica BGIOSGA018468 N 0.000
MLOC_66012 Hordeum vulgare MLOC_66012 N 0.000
MLOC_75540 Hordeum vulgare MLOC_75540 N 0.000
Sb01g009090 Sorghum bicolor Sb01g009090 N 0.000
PRUPE_ppa001983mg Prunus persica PRUPE_ppa001983mg N 0.000
POPTR_0018s12690 Populus trichocarpa POPTR_0018s12690 N 0.000
PGSC0003DMG400023690 Solanum tuberosum PGSC0003DMG400023690 N 0.000
PGSC0003DMG400002911 Solanum tuberosum PGSC0003DMG400002911 N 0.000
OS05G0583200 Oryza sativa OS05G0583200 N 0.000
OS03G0733400 Oryza sativa OS03G0733400 N 0.000
ORGLA05G0236800 Oryza glaberrima ORGLA05G0236800 N 0.000
ORGLA05G0072400 Oryza glaberrima ORGLA05G0072400 N 0.000
ORGLA03G0300400 Oryza glaberrima ORGLA03G0300400 N 0.000
OB08G27850 Oryza brachyantha OB08G27850 N 0.000
OB08G27840 Oryza brachyantha OB08G27840 N 0.000
OB03G40190 Oryza brachyantha OB03G40190 N 0.000
BGIOSGA009862 Oryza indica BGIOSGA009862 N 0.000