Pavir.J15676 (Panicum virgatum)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 Pavir.J15676 T050890_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
BPE
M01700_2.00 		Arabidopsis thaliana
NCACGTNNN
NNNACGTGN		 PBM
Weirauch et al.(2014)
pTH7290 		0.846 0.840
BPE
M06726_2.00 		Arabidopsis thaliana
NNNNNNNNCACGTGNNNNNWB
VWNNNNNCACGTGNNNNNNNN		 Dap-seq
OMalley et al.(2016)
bHLH31_col 		0.846 0.840
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J15676.1.p bHLH 86 136

Links

Other bHLH family TFs
Other Panicum virgatum TFs

239 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Si013867m.g Setaria italica Si013867m.g I 0.902
OMERI02G01640 Oryza meridionalis OMERI02G01640 I 0.902
OB08G27870 Oryza brachyantha OB08G27870 I 0.902
BRADI3G40860 Brachypodium distachyon BRADI3G40860 I 0.902
Sb07g026610 Sorghum bicolor Sb07g026610 I 0.902
ORUFI08G23530 Oryza rufipogon ORUFI08G23530 I 0.902
OGLUM08G22300 Oryza glumaepatula OGLUM08G22300 I 0.902
OLONG_017994 Oryza longistaminata OLONG_017994 I 0.902
ONIVA08G23980 Oryza nivara ONIVA08G23980 I 0.902
LPERR08G17860 Leersia perrieri LPERR08G17860 I 0.902
OS08G0524800 Oryza sativa OS08G0524800 I 0.902
OBART08G21070 Oryza barthii OBART08G21070 I 0.902
TRIUR3_26736 Triticum urartu TRIUR3_26736 I 0.902
OPUNC08G19080 Oryza punctata OPUNC08G19080 I 0.902
GRMZM5G828396 Zea mays GRMZM5G828396 I 0.902
Pavir.Fb01965 Panicum virgatum Pavir.Fb01965 I 0.902
BGIOSGA029027 Oryza indica BGIOSGA029027 I 0.902
Traes_7AS_15078CC8B Triticum aestivum Traes_7AS_15078CC8B I 0.902
MLOC_57622 Hordeum vulgare MLOC_57622 I 0.902
OPUNC08G19200 Oryza punctata OPUNC08G19200 I 0.902
POPTR_0012s07470 Populus trichocarpa POPTR_0012s07470 I 0.881
Gorai.007G034400 Gossypium raimondii Gorai.007G034400 I 0.881
Bostr.18473s0167 Boechera stricta Bostr.18473s0167 I 0.879
F775_19483 Aegilops tauschii F775_19483 N 0.876
OMERI09G11890 Oryza meridionalis OMERI09G11890 I 0.868
OMERI06G13890 Oryza meridionalis OMERI06G13890 I 0.868
OBART04G08520 Oryza barthii OBART04G08520 I 0.868
OB09G22630 Oryza brachyantha OB09G22630 I 0.868
ONIVA04G06980 Oryza nivara ONIVA04G06980 I 0.868
OB08G28640 Oryza brachyantha OB08G28640 I 0.868
OMERI04G07880 Oryza meridionalis OMERI04G07880 I 0.868
OBART08G21870 Oryza barthii OBART08G21870 I 0.868
OLONG_000881 Oryza longistaminata OLONG_000881 I 0.868
OGLUM08G23160 Oryza glumaepatula OGLUM08G23160 I 0.868
OGLUM04G08470 Oryza glumaepatula OGLUM04G08470 I 0.868
OLONG_019831 Oryza longistaminata OLONG_019831 I 0.868
OBART09G15990 Oryza barthii OBART09G15990 I 0.868
Pavir.Ba01554 Panicum virgatum Pavir.Ba01554 I 0.868
OGLUM09G16540 Oryza glumaepatula OGLUM09G16540 I 0.868
ORGLA09G0124100 Oryza glaberrima ORGLA09G0124100 I 0.868
Si030841m.g Setaria italica Si030841m.g I 0.868
Si014139m.g Setaria italica Si014139m.g I 0.868
Sb07g025920 Sorghum bicolor Sb07g025920 I 0.868
Sb02g029530 Sorghum bicolor Sb02g029530 I 0.868
Traes_5BL_34CEC5885 Triticum aestivum Traes_5BL_34CEC5885 I 0.868
Traes_5DL_A7B24A017 Triticum aestivum Traes_5DL_A7B24A017 I 0.868
mgf020423m Mimulus guttatus mgf020423m I 0.868
TRIUR3_31628 Triticum urartu TRIUR3_31628 I 0.868
Traes_7BS_BFA4F9A4A Triticum aestivum Traes_7BS_BFA4F9A4A I 0.868
Traes_7AS_8ED861ED7 Triticum aestivum Traes_7AS_8ED861ED7 I 0.868
POPTR_0015s11550 Populus trichocarpa POPTR_0015s11550 I 0.868
AMTR_s00065p00068810 Amborella trichopoda AMTR_s00065p00068810 I 0.868
ORGLA08G0226800 Oryza glaberrima ORGLA08G0226800 I 0.868
OPUNC09G14440 Oryza punctata OPUNC09G14440 I 0.868
OPUNC08G19920 Oryza punctata OPUNC08G19920 I 0.868
ONIVA09G17110 Oryza nivara ONIVA09G17110 I 0.868
ORUFI04G09760 Oryza rufipogon ORUFI04G09760 I 0.868
ORUFI08G24310 Oryza rufipogon ORUFI08G24310 I 0.868
OS09G0510500 Oryza sativa OS09G0510500 I 0.868
OS08G0536800 Oryza sativa OS08G0536800 I 0.868
OS04G0350700 Oryza sativa OS04G0350700 I 0.868
ORUFI09G17270 Oryza rufipogon ORUFI09G17270 I 0.868
ONIVA08G24900 Oryza nivara ONIVA08G24900 I 0.868
OPUNC04G07110 Oryza punctata OPUNC04G07110 I 0.868
Pavir.J22627 Panicum virgatum Pavir.J22627 I 0.868
Pavir.J21235 Panicum virgatum Pavir.J21235 I 0.868
LPERR04G05850 Leersia perrieri LPERR04G05850 I 0.868
GRMZM2G178182 Zea mays GRMZM2G178182 I 0.868
OB04G16610 Oryza brachyantha OB04G16610 I 0.868
SapurV1A.1312s0010 Salix purpurea SapurV1A.1312s0010 I 0.868
F775_26771 Aegilops tauschii F775_26771 I 0.868
F775_21715 Aegilops tauschii F775_21715 I 0.868
LPERR08G18570 Leersia perrieri LPERR08G18570 I 0.868
Pavir.J05063 Panicum virgatum Pavir.J05063 I 0.868
BGIOSGA026577 Oryza indica BGIOSGA026577 I 0.868
BRADI3G41510 Brachypodium distachyon BRADI3G41510 I 0.868
Pavir.Fa00144 Panicum virgatum Pavir.Fa00144 I 0.868
GRMZM5G882527 Zea mays GRMZM5G882527 I 0.868
MLOC_16609 Hordeum vulgare MLOC_16609 I 0.868
SapurV1A.1303s0100 Salix purpurea SapurV1A.1303s0100 I 0.868
LPERR09G12170 Leersia perrieri LPERR09G12170 I 0.868
GSMUA_Achr10G20510_001 Musa acuminata GSMUA_Achr10G20510_001 I 0.862
GSMUA_Achr6G09050_001 Musa acuminata GSMUA_Achr6G09050_001 I 0.862
ORGLA09G0119400 Oryza glaberrima ORGLA09G0119400 I 0.853
ORUFI09G16640 Oryza rufipogon ORUFI09G16640 I 0.853
OPUNC09G13830 Oryza punctata OPUNC09G13830 I 0.853
GRMZM2G144275 Zea mays GRMZM2G144275 I 0.853
Sb02g029040 Sorghum bicolor Sb02g029040 I 0.853
Si030324m.g Setaria italica Si030324m.g I 0.853
Solyc06g083170.2 Solanum lycopersicum Solyc06g083170.2 I 0.853
BGIOSGA029497 Oryza indica BGIOSGA029497 I 0.853
PDK_20s1350022g001 Phoenix dactylifera PDK_20s1350022g001 I 0.853
PGSC0003DMG400020174 Solanum tuberosum PGSC0003DMG400020174 I 0.853
POPTR_0006s05600 Populus trichocarpa POPTR_0006s05600 I 0.853
OS09G0501600 Oryza sativa OS09G0501600 I 0.853
GRMZM2G083504 Zea mays GRMZM2G083504 I 0.853
OMERI07G04600 Oryza meridionalis OMERI07G04600 I 0.853
Pavir.Ba01626 Panicum virgatum Pavir.Ba01626 I 0.853
LPERR09G11560 Leersia perrieri LPERR09G11560 I 0.853
OGLUM09G16010 Oryza glumaepatula OGLUM09G16010 I 0.853
Pavir.J32774 Panicum virgatum Pavir.J32774 I 0.853
GSMUA_Achr6G36210_001 Musa acuminata GSMUA_Achr6G36210_001 I 0.853
SapurV1A.0018s0230 Salix purpurea SapurV1A.0018s0230 I 0.853
OBART09G15400 Oryza barthii OBART09G15400 I 0.853
SapurV1A.0133s0090 Salix purpurea SapurV1A.0133s0090 I 0.853
ONIVA09G16520 Oryza nivara ONIVA09G16520 I 0.853
OB09G21960 Oryza brachyantha OB09G21960 I 0.853
Aquca_006_00058 Aquilegia coerulea Aquca_006_00058 I 0.853
Bra019935 Brassica rapa Bra019935 I 0.846
VIT_17s0000g05370 Vitis vinifera VIT_17s0000g05370 I 0.846
Ca_15315 Cicer arietinum Ca_15315 I 0.846
Eucgr.B00385 Eucalyptus grandis Eucgr.B00385 I 0.846
Ca_17591 Cicer arietinum Ca_17591 I 0.846
Carubv10020803m.g Capsella rubella Carubv10020803m.g I 0.846
gene09544-v1.0-hybrid Fragaria vesca gene09544-v1.0-hybrid I 0.846
chr1.LjT06C08.10.nc Lotus japonicus chr1.LjT06C08.10.nc I 0.846
Ciclev10021606m.g Citrus clementina Ciclev10021606m.g I 0.846
Bo5g010880 Brassica oleracea Bo5g010880 I 0.846
PK28434.1 Cannabis sativa PK28434.1 I 0.846
Ca_19529 Cicer arietinum Ca_19529 I 0.846
Lus10013284.g Linum usitatissimum Lus10013284.g I 0.846
Gorai.008G053100 Gossypium raimondii Gorai.008G053100 I 0.846
Gorai.005G188700 Gossypium raimondii Gorai.005G188700 I 0.846
VIT_01s0026g01140 Vitis vinifera VIT_01s0026g01140 I 0.846
Cla022234 Citrullus lanatus Cla022234 I 0.846
Cucsa.197380 Cucumis sativus Cucsa.197380 I 0.846
Cucsa.005360 Cucumis sativus Cucsa.005360 I 0.846
cassava23015.valid.m1 Manihot esculenta cassava23015.valid.m1 I 0.846
cassava22865.valid.m1 Manihot esculenta cassava22865.valid.m1 I 0.846
evm.TU.supercontig_5.303 Carica papaya evm.TU.supercontig_5.303 I 0.846
PK14657.1 Cannabis sativa PK14657.1 I 0.846
BPE Arabidopsis thaliana AT1G59640 D 0.846
Eucgr.K02908 Eucalyptus grandis Eucgr.K02908 I 0.846
evm.TU.supercontig_203.5 Carica papaya evm.TU.supercontig_203.5 I 0.846
Bostr.10040s0284 Boechera stricta Bostr.10040s0284 I 0.846
cassava19743.m1 Manihot esculenta cassava19743.m1 I 0.846
cassava1662.valid.m1 Manihot esculenta cassava1662.valid.m1 I 0.846
Pm006609 Prunus mume Pm006609 I 0.846
Eucgr.B03392 Eucalyptus grandis Eucgr.B03392 I 0.846
mgf024478m Mimulus guttatus mgf024478m I 0.846
Cla019439 Citrullus lanatus Cla019439 I 0.846
Pm024636 Prunus mume Pm024636 I 0.846
29736.m002076 Ricinus communis 29736.m002076 I 0.846
cassava13740.valid.m1 Manihot esculenta cassava13740.valid.m1 I 0.846
30147.m014038 Ricinus communis 30147.m014038 I 0.846
AMTR_s00133p00027110 Amborella trichopoda AMTR_s00133p00027110 I 0.846
Cagra.4331s0005 Capsella grandiflora Cagra.4331s0005 I 0.846
PRUPE_ppa009543mg Prunus persica PRUPE_ppa009543mg I 0.846
GLYMA04G34660 Glycine max GLYMA04G34660 I 0.846
GLYMA06G20000 Glycine max GLYMA06G20000 I 0.846
GLYMA08G40541 Glycine max GLYMA08G40541 I 0.846
GLYMA17G10290 Glycine max GLYMA17G10290 I 0.846
MDP0000215269 Malus domestica MDP0000215269 I 0.846
GLYMA02G02942 Glycine max GLYMA02G02942 I 0.846
Lus10030807.g Linum usitatissimum Lus10030807.g I 0.846
GLYMA01G04610 Glycine max GLYMA01G04610 I 0.846
GLYMA02G02934 Glycine max GLYMA02G02934 I 0.846
MDP0000282600 Malus domestica MDP0000282600 I 0.846
MDP0000299846 Malus domestica MDP0000299846 I 0.846
SapurV1A.0007s0010 Salix purpurea SapurV1A.0007s0010 I 0.846
GSMUA_Achr2G21460_001 Musa acuminata GSMUA_Achr2G21460_001 I 0.846
GSMUA_Achr6G16480_001 Musa acuminata GSMUA_Achr6G16480_001 I 0.846
MTR_8g062240 Medicago truncatula MTR_8g062240 I 0.846
orange1.1g024344m.g Citrus sinensis orange1.1g024344m.g I 0.846
GSMUA_Achr10G12020_001 Musa acuminata GSMUA_Achr10G12020_001 I 0.846
SapurV1A.0161s0140 Salix purpurea SapurV1A.0161s0140 I 0.846
Ciclev10032412m.g Citrus clementina Ciclev10032412m.g I 0.846
orange1.1g023847m.g Citrus sinensis orange1.1g023847m.g I 0.846
PGSC0003DMG400001930 Solanum tuberosum PGSC0003DMG400001930 I 0.846
SapurV1A.1596s0040 Salix purpurea SapurV1A.1596s0040 I 0.846
ZCW32 Arabidopsis lyrata scaffold_200689.1 I 0.846
TCM_045701 Theobroma cacao TCM_045701 I 0.846
Thhalv10023643m.g Eutrema salsugineum Thhalv10023643m.g I 0.846
MDP0000195579 Malus domestica MDP0000195579 I 0.846
Lus10033120.g Linum usitatissimum Lus10033120.g I 0.846
Solyc04g005130.2 Solanum lycopersicum Solyc04g005130.2 I 0.846
TCM_045748 Theobroma cacao TCM_045748 I 0.846
MDP0000205807 Malus domestica MDP0000205807 I 0.846
POPTR_0010s04920 Populus trichocarpa POPTR_0010s04920 I 0.846
PGSC0003DMG401024463 Solanum tuberosum PGSC0003DMG401024463 I 0.846
POPTR_0015s07930 Populus trichocarpa POPTR_0015s07930 I 0.846
Solyc05g006650.2 Solanum lycopersicum Solyc05g006650.2 I 0.846
Thhalv10008474m.g Eutrema salsugineum Thhalv10008474m.g I 0.846
PRUPE_ppa009757mg Prunus persica PRUPE_ppa009757mg I 0.846
PGSC0003DMG401022600 Solanum tuberosum PGSC0003DMG401022600 I 0.846
Cagra.13768s0007 Capsella grandiflora Cagra.13768s0007 I 0.844
BRADI5G06620 Brachypodium distachyon BRADI5G06620 I 0.844
fgenesh1_pg.C_scaffold_5001270 Arabidopsis lyrata fgenesh1_pg.C_scaffold_5001270 I 0.844
Carubv10017822m.g Capsella rubella Carubv10017822m.g I 0.844
Traes_5BL_8C181ECA8 Triticum aestivum Traes_5BL_8C181ECA8 I 0.843
BRADI4G34350 Brachypodium distachyon BRADI4G34350 I 0.843
F775_05676 Aegilops tauschii F775_05676 I 0.843
Pavir.Ab02860 Panicum virgatum Pavir.Ab02860 I 0.842
Pavir.Aa00761 Panicum virgatum Pavir.Aa00761 I 0.842
PGSC0003DMG400004922 Solanum tuberosum PGSC0003DMG400004922 I 0.842
LPERR02G23970 Leersia perrieri LPERR02G23970 I 0.842
GSMUA_AchrUn_randomG23560_001 Musa acuminata GSMUA_AchrUn_randomG23560_001 I 0.842
GSMUA_Achr9G09770_001 Musa acuminata GSMUA_Achr9G09770_001 I 0.842
MLOC_57269 Hordeum vulgare MLOC_57269 I 0.842
OB02G36640 Oryza brachyantha OB02G36640 I 0.842
OMERI02G28340 Oryza meridionalis OMERI02G28340 I 0.842
OLONG_001553 Oryza longistaminata OLONG_001553 I 0.842
OBART02G29490 Oryza barthii OBART02G29490 I 0.842
GSMUA_Achr2G09660_001 Musa acuminata GSMUA_Achr2G09660_001 I 0.842
GSMUA_Achr1G09570_001 Musa acuminata GSMUA_Achr1G09570_001 I 0.842
F775_14629 Aegilops tauschii F775_14629 I 0.842
BRADI3G52790 Brachypodium distachyon BRADI3G52790 I 0.842
BGIOSGA005771 Oryza indica BGIOSGA005771 I 0.842
GRMZM2G101350 Zea mays GRMZM2G101350 I 0.842
GRMZM2G145579 Zea mays GRMZM2G145579 I 0.842
GSMUA_Achr10G19850_001 Musa acuminata GSMUA_Achr10G19850_001 N 0.842
GRMZM2G176289 Zea mays GRMZM2G176289 I 0.842
ONIVA02G32260 Oryza nivara ONIVA02G32260 I 0.842
OGLUM02G30150 Oryza glumaepatula OGLUM02G30150 I 0.842
VIT_07s0151g00450 Vitis vinifera VIT_07s0151g00450 I 0.842
mgf009185m Mimulus guttatus mgf009185m I 0.842
Traes_6AL_FACBEB134 Triticum aestivum Traes_6AL_FACBEB134 I 0.842
Traes_6DL_04EAF750D Triticum aestivum Traes_6DL_04EAF750D I 0.842
OPUNC02G27080 Oryza punctata OPUNC02G27080 I 0.842
Solyc04g077480.2 Solanum lycopersicum Solyc04g077480.2 I 0.842
Si017630m.g Setaria italica Si017630m.g I 0.842
ORGLA02G0252900 Oryza glaberrima ORGLA02G0252900 I 0.842
ORUFI02G31120 Oryza rufipogon ORUFI02G31120 I 0.842
OS02G0705500 Oryza sativa OS02G0705500 I 0.842
Sb04g030530 Sorghum bicolor Sb04g030530 I 0.842
Bostr.0568s0546 Boechera stricta Bostr.0568s0546 I 0.841
Bra035888 Brassica rapa Bra035888 I 0.841
Cagra.4003s0049 Capsella grandiflora Cagra.4003s0049 I 0.841
BHLH79 Arabidopsis thaliana AT5G62610 I 0.841
Thhalv10004734m.g Eutrema salsugineum Thhalv10004734m.g I 0.841
Bo9g015060 Brassica oleracea Bo9g015060 I 0.841
Traes_7DS_538404789 Triticum aestivum Traes_7DS_538404789 I 0.841
Traes_5AL_F72B730FE Triticum aestivum Traes_5AL_F72B730FE I 0.841
Carubv10026916m.g Capsella rubella Carubv10026916m.g I 0.841
TRIUR3_15679 Triticum urartu TRIUR3_15679 I 0.841
fgenesh2_kg.8__2257__AT5G62610.1 Arabidopsis lyrata fgenesh2_kg.8__2257__AT5G62610.1 I 0.841
PDK_20s1896091g002 Phoenix dactylifera PDK_20s1896091g002 N 0.839
GSMUA_Achr5G16470_001 Musa acuminata GSMUA_Achr5G16470_001 I 0.838
mgf020073m Mimulus guttatus mgf020073m I 0.838