Pavir.J24659 (Panicum virgatum)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 Pavir.J24659 T050911_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
gw1.270.82.1
M01758_2.00
Physcomitrella patens
NCACGTGH

DCACGTGN
PBM
Weirauch et al.(2014)
pTH8457
0.890 0.918
BHLH74
M06720_2.00
Arabidopsis thaliana
SDHSDNDNNCACGTGVNNNNW

WNNNNBCACGTGNNHNHSDHS
Dap-seq
OMalley et al.(2016)
bHLH74_col_a
0.890 0.898
BHLH74
M06721_2.00
Arabidopsis thaliana
CACGTGAY

RTCACGTG
Dap-seq
OMalley et al.(2016)
bHLH74_colamp_a
0.890 0.898
BHLH77
M06736_2.00
Arabidopsis thaliana
NKCACGTGVHNWHNB

VNDWNDBCACGTGMN
Dap-seq
OMalley et al.(2016)
bHLH77_col_a
0.890 0.878
BHLH49
M01052_2.00
Arabidopsis thaliana
NNCACGTGCN

NGCACGTGNN
PBM
Sullivan et al.(2014)
pTH7309
0.877 0.898
PK06517.1
M01122_2.00
Cannabis sativa
NCACGTGC

GCACGTGN
PBM
Lambert et al.(2019)
pTH10104
0.877 0.863
BHLH78
M01713_2.00
Arabidopsis thaliana
GCACGTGC

GCACGTGC
PBM
Weirauch et al.(2014)
pTH7666
0.851 0.857
BPE
M01700_2.00
Arabidopsis thaliana
NCACGTNNN

NNNACGTGN
PBM
Weirauch et al.(2014)
pTH7290
0.838 0.796
BPE
M06726_2.00
Arabidopsis thaliana
NNNNNNNNCACGTGNNNNNWB

VWNNNNNCACGTGNNNNNNNN
Dap-seq
OMalley et al.(2016)
bHLH31_col
0.838 0.796
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J24659.1.p bHLH 148 202
Pavir.J24659.2.p bHLH 146 196
Pavir.J24659.3.p bHLH 146 196
Pavir.J24659.4.p bHLH 146 196

Links

Other bHLH family TFs
Other Panicum virgatum TFs

666 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Aan_R009291 Calypte anna Aan_R009291 I 0.000
Afo_R001565 Aptenodytes forsteri Afo_R001565 I 0.000
Brh_R009924 Buceros rhinoceros Brh_R009924 I 0.000
ENSAMEG00000015231 Ailuropoda melanoleuca ENSAMEG00000015231 I 0.000
ENSAMXG00000012133 Astyanax mexicanus ENSAMXG00000012133 I 0.000
NAIF1 Bos taurus ENSBTAG00000012156 I 0.000
ENSBTAP00000016123-D1 Bos grunniens ENSBTAP00000016123-D1 I 0.000
NAIF1 Canis familiaris ENSCAFG00000020093 I 0.000
NAIF1 Callithrix jacchus ENSCJAG00000019895 I 0.000
ENSCPOG00000008322 Cavia porcellus ENSCPOG00000008322 I 0.000
ENSCSAG00000013989 Chlorocebus sabaeus ENSCSAG00000013989 I 0.000
naif1 Danio rerio ENSDARG00000062753 I 0.000
NAIF1 Dasypus novemcinctus ENSDNOG00000034148 I 0.000
NAIF1 Equus caballus ENSECAG00000014827 I 0.000
NAIF1 Erinaceus europaeus ENSEEUG00000009746 I 0.000
ENSFALG00000001298 Ficedula albicollis ENSFALG00000001298 I 0.000
NAIF1 Felis catus ENSFCAG00000001494 I 0.000
NAIF1 Homo sapiens ENSG00000171169 I 0.000
naif1 Gasterosteus aculeatus ENSGACG00000018458 I 0.000
NAIF1 Gallus gallus ENSGALG00000027734 I 0.000
NAIF1 Gorilla gorilla ENSGGOG00000011178 I 0.000
ENSLACG00000016334 Latimeria chalumnae ENSLACG00000016334 I 0.000
NAIF1 Loxodonta africana ENSLAFG00000031104 I 0.000
ENSMEUG00000000224 Macropus eugenii ENSMEUG00000000224 I 0.000
NAIF1 Meleagris gallopavo ENSMGAG00000003576 I 0.000
ENSMICG00000012773 Microcebus murinus ENSMICG00000012773 I 0.000
NAIF1 Myotis lucifugus ENSMLUG00000013565 I 0.000
NAIF1 Macaca mulatta ENSMMUG00000004685 I 0.000
NAIF1 Monodelphis domestica ENSMODG00000005695 I 0.000
ENSMPUG00000013510 Mustela putorius furo ENSMPUG00000013510 I 0.000
Naif1 Mus musculus ENSMUSG00000039164 I 0.000
ENSNLEG00000017520 Nomascus leucogenys ENSNLEG00000017520 I 0.000
ENSOARG00000010974 Ovis aries ENSOARG00000010974 I 0.000
NAIF1 Oryctolagus cuniculus ENSOCUG00000013385 I 0.000
NAIF1 Otolemur garnettii ENSOGAG00000031498 I 0.000
ENSONIG00000012590 Oreochromis niloticus ENSONIG00000012590 I 0.000
ENSOPRG00000016390 Ochotona princeps ENSOPRG00000016390 I 0.000
naif1 Oryzias latipes ENSORLG00000018283 I 0.000
ENSP00000362170 Macaca fascicularis ENSP00000362170 I 0.000
NAIF1 Procavia capensis ENSPCAG00000011530 I 0.000
ENSPFOG00000005824 Poecilia formosa ENSPFOG00000005824 I 0.000
ENSPPYG00000019640 Pongo abelii ENSPPYG00000019640 I 0.000
ENSPSIG00000007027 Pelodiscus sinensis ENSPSIG00000007027 I 0.000
NAIF1 Pan troglodytes ENSPTRG00000021409 I 0.000
NAIF1 Pteropus vampyrus ENSPVAG00000002431 I 0.000
Naif1 Rattus norvegicus ENSRNOG00000050204 I 0.000
NAIF1 Sorex araneus ENSSARG00000011449 I 0.000
NAIF1 Sus scrofa ENSSSCG00000005630 I 0.000
ENSSTOG00000007837 Ictidomys tridecemlineatus ENSSTOG00000007837 I 0.000
NAIF1 Taeniopygia guttata ENSTGUG00000003526 I 0.000
naif1 Takifugu rubripes ENSTRUG00000013589 I 0.000
ENSTSYG00000001421 Tarsius syrichta ENSTSYG00000001421 I 0.000
NAIF1 Tursiops truncatus ENSTTRG00000016473 I 0.000
ENSXMAG00000013359 Xiphophorus maculatus ENSXMAG00000013359 I 0.000
NAIF1_CHICK Gallus gallus NAIF1_CHICK D 0.000
Pvit_08550 Pogona vitticeps Pvit_08550 I 0.000
naif1 Xenopus tropicalis XB-GENE-986890 D 0.000
naif1.S Xenopus laevis XB-GENE-986896 D 0.000